View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15642_low_7 (Length: 657)
Name: NF15642_low_7
Description: NF15642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15642_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 107 - 645
Target Start/End: Original strand, 31821532 - 31822070
Alignment:
| Q |
107 |
ttgtgttacctcaagaagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttac |
206 |
Q |
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| T |
31821532 |
ttgtgttacctcaagaagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttac |
31821631 |
T |
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| Q |
207 |
ttcacaagttacatgcatgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaagagattgttctttaccgaagtaagcacattaa |
306 |
Q |
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| T |
31821632 |
ttcacaagttacatgcatgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaagagattgttctttaccgaagtaagcacattaa |
31821731 |
T |
|
| Q |
307 |
gattctttacatttttcaaatttcttgttttagtttgatagtgttgttaatgttgattacatttgtataaacttgttattaaggttcgaaccaagagttc |
406 |
Q |
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| T |
31821732 |
aattctttacatttttcaaatttcttgttttagtttgatagtgttgttaatgttgattacatttgtataaacttgttattaaggttcaaaccaagagttc |
31821831 |
T |
|
| Q |
407 |
tacttgagaagcttagagggaagaggcttatgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgttattcc |
506 |
Q |
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| T |
31821832 |
tacttgagaagcttagagggaagaggcttatgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgttattcc |
31821931 |
T |
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| Q |
507 |
tcaaagcaaaaagagcttgaacaaaactggttctctctctattttcagaattgaggtttgtcttctttaactttttctctttgtggtcaaaagtagggaa |
606 |
Q |
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| T |
31821932 |
tcaaagcaaaaagagcttgaacaaaactggttctctctctattttcagaattgaggtttgtcttctttaactttttctctttgtggtcaaaagtagggaa |
31822031 |
T |
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| Q |
607 |
tatattgatgccatcataatgattaatcacaagtataat |
645 |
Q |
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| T |
31822032 |
tatattgatgccaacataatgattaatcacaagtataat |
31822070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 31821445 - 31821493
Alignment:
| Q |
20 |
attctgaggaaatccaagaaccagttgatttgaaagacgttgtgttaac |
68 |
Q |
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| T |
31821445 |
attctgaggaaatccaagaaccggttaatttgaaagacgttgtgttaac |
31821493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 122 - 285
Target Start/End: Original strand, 35688453 - 35688616
Alignment:
| Q |
122 |
aagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttacttcacaagttacatg |
221 |
Q |
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| T |
35688453 |
aagattgtgacttgttcaatggtaaatgggttttagataacgtgacacatcctttgtataaagaagatgaatgtgagtttctcacttctcaagttacatg |
35688552 |
T |
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| Q |
222 |
catgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaagagattgttct |
285 |
Q |
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|||| |||||||||| |||||||||||||||||||||||| |||||||||| ||| |||||| |
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| T |
35688553 |
tatgaggaatggaagacgtgattctttgtatcagaattggaaatggcagccaaaagactgttct |
35688616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 413 - 500
Target Start/End: Original strand, 35688742 - 35688829
Alignment:
| Q |
413 |
agaagcttagagggaagaggcttatgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgt |
500 |
Q |
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| T |
35688742 |
agaagattagagggaagaggttaatgtttgttggagactctttgaatagaaaccagtgggaatcaatggtttgtatggttcaatctgt |
35688829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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