View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15643_high_1 (Length: 419)

Name: NF15643_high_1
Description: NF15643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15643_high_1
NF15643_high_1
[»] chr8 (9 HSPs)
chr8 (1-287)||(11027064-11027350)
chr8 (319-373)||(10124866-10124922)
chr8 (312-373)||(40930902-40930962)
chr8 (312-375)||(5200552-5200616)
chr8 (309-372)||(7845076-7845138)
chr8 (312-375)||(24200691-24200754)
chr8 (313-371)||(30836212-30836272)
chr8 (320-365)||(13959301-13959347)
chr8 (313-373)||(25829338-25829399)
[»] chr1 (9 HSPs)
chr1 (310-377)||(31833892-31833959)
chr1 (312-378)||(47028930-47028997)
chr1 (319-377)||(41955957-41956016)
chr1 (313-373)||(12172954-12173015)
chr1 (312-376)||(46757305-46757370)
chr1 (312-373)||(42442081-42442143)
chr1 (313-371)||(43268679-43268739)
chr1 (319-375)||(8463040-8463097)
chr1 (312-375)||(26990600-26990664)
[»] chr7 (8 HSPs)
chr7 (311-375)||(46691918-46691983)
chr7 (319-373)||(49035928-49035983)
chr7 (311-374)||(22197666-22197730)
chr7 (311-374)||(22240091-22240155)
chr7 (316-375)||(41702867-41702927)
chr7 (311-373)||(36615874-36615936)
chr7 (319-373)||(30655671-30655727)
chr7 (307-375)||(43397634-43397702)
[»] chr3 (14 HSPs)
chr3 (310-378)||(8431484-8431552)
chr3 (309-376)||(43073115-43073182)
chr3 (311-373)||(28934808-28934870)
chr3 (313-373)||(31525363-31525424)
chr3 (313-375)||(10454279-10454342)
chr3 (309-375)||(53349397-53349464)
chr3 (313-375)||(44656298-44656360)
chr3 (309-377)||(46750208-46750275)
chr3 (319-373)||(20701152-20701206)
chr3 (319-377)||(42881885-42881943)
chr3 (319-371)||(28956952-28957005)
chr3 (313-371)||(9358823-9358883)
chr3 (313-371)||(47820897-47820957)
chr3 (312-343)||(55166925-55166956)
[»] chr2 (4 HSPs)
chr2 (310-378)||(38908666-38908734)
chr2 (307-377)||(41419611-41419682)
chr2 (313-376)||(14732409-14732473)
chr2 (312-371)||(41378272-41378333)
[»] chr5 (6 HSPs)
chr5 (309-377)||(25539815-25539883)
chr5 (319-371)||(2292168-2292222)
chr5 (308-376)||(3677861-3677929)
chr5 (313-377)||(22887211-22887275)
chr5 (311-373)||(819201-819263)
chr5 (313-346)||(23173074-23173107)
[»] chr6 (2 HSPs)
chr6 (312-371)||(10246909-10246969)
chr6 (312-371)||(15859092-15859154)
[»] chr4 (4 HSPs)
chr4 (321-378)||(47571638-47571694)
chr4 (312-371)||(32183274-32183336)
chr4 (319-378)||(16572074-16572134)
chr4 (314-346)||(42390874-42390906)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 11027350 - 11027064
Alignment:
Q  1 aagtatttacttacaagaacgctattacacaaacctgcatggcaacataaagtggcacaaagtgattgagcttccaatgccccaattcgtgggcaataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11027350 aagtatttacttacaagaacgctattacacaaacctgcatggcaacataaagtggcacaaagtgattgagcttccaatgccccaattcgtgggcaataac 11027251  T
Q  101 agctaacacttcctcatcatttttgtcctgcaatacgatatttggtaatgtaagatcaaccatgaccaagtataccataaaagatgaggaccatgggttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11027250 agctaacacttcctcatcatttttgtcctgcaatacgatatttggtaatgtaagatcaaccatgaccaagtataccataaaagatgaggaccatgggttg 11027151  T
Q  201 ccttcacttgtaagaaggccaacagttcccccaaatgtattgaaaattttgttagatatgtacattttgttgtttgaataatgtgac 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11027150 ccttcacttgtaagaaggccaacagttcccccaaatgtattgaaaattttgttagaaatgtacattttgttgtttgaataatgtgac 11027064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 10124866 - 10124922
Alignment:
Q  319 tttttaaggggtttttgttcgagccggtattatgt--ggcaaccgatttccccttgt 373  Q
    |||||||||||||||||||||||||||| || |||  ||||||||||||||||||||    
T  10124866 tttttaaggggtttttgttcgagccggtgttttgttaggcaaccgatttccccttgt 10124922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 40930962 - 40930902
Alignment:
Q  312 ggggtggtttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgt 373  Q
    |||||||||||||||| |||||||||||||||| | || |||| ||||||||||||||||||    
T  40930962 ggggtggtttttaaggagtttttgttcgagccgttgtt-tgtgacaaccgatttccccttgt 40930902  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 5200616 - 5200552
Alignment:
Q  312 ggggtggtttttaaggggtttttgttcgagccggt-attatgtggcaaccgatttccccttgtat 375  Q
    |||||| ||||||||||||||||||||||||||||  || || |||||||||||| |||||||||    
T  5200616 ggggtgatttttaaggggtttttgttcgagccggtgtttgtgcggcaaccgattttcccttgtat 5200552  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 7845076 - 7845138
Alignment:
Q  309 tttggggtggtttttaaggggtttttgttcgagccggtatt-atgtggcaaccgatttccccttg 372  Q
    |||||||||||||||||||||   |||||||||||||| || |||| ||||||||||||||||||    
T  7845076 tttggggtggtttttaagggg--attgttcgagccggtgttaatgttgcaaccgatttccccttg 7845138  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 24200754 - 24200691
Alignment:
Q  312 ggggtggtttttaaggggtttttgttcgagccggtattat-gtggcaaccgatttccccttgtat 375  Q
    ||||||||||||||| | ||||||||||||||||| || | | ||||||||||||||||||||||    
T  24200754 ggggtggtttttaagtg-tttttgttcgagccggtgtttttgcggcaaccgatttccccttgtat 24200691  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 30836272 - 30836212
Alignment:
Q  313 gggtggtttttaa-ggggtttttgttcgagccggta-ttatgtggcaaccgatttcccctt 371  Q
    ||||||||||||| |||||||||||||||||||||| || || ||||| ||||||||||||    
T  30836272 gggtggtttttaaaggggtttttgttcgagccggtatttgtgcggcaatcgatttcccctt 30836212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 365
Target Start/End: Complemental strand, 13959347 - 13959301
Alignment:
Q  320 ttttaaggggtttttgttcgagccggt-attatgtggcaaccgattt 365  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||    
T  13959347 ttttaaggggtttttgtttgagccggtgtttatgtggcaaccgattt 13959301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 25829399 - 25829338
Alignment:
Q  313 gggtggtttttaaggggtttttgttcgagccggt-attatgtggcaaccgatttccccttgt 373  Q
    |||||||||||||||||||||| ||| |||||||  ||||  || |||||||||||||||||    
T  25829399 gggtggtttttaaggggtttttattcaagccggtgtttatagggaaaccgatttccccttgt 25829338  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 377
Target Start/End: Original strand, 31833892 - 31833959
Alignment:
Q  310 ttggggtggtttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtattt 377  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  31833892 ttggggtggtttttaaggggtttttgttcgagccggtgttatgtggcaaccgattttcccttgtattt 31833959  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 47028930 - 47028997
Alignment:
Q  312 ggggtggtttttaaggggtttttgttcgagccggt-attatgtggcaaccgatttccccttgtattta 378  Q
    ||||| |||||||||||||||||||||||||||||  || || |||||||||||||||||||||||||    
T  47028930 ggggtagtttttaaggggtttttgttcgagccggtgtttttgcggcaaccgatttccccttgtattta 47028997  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 377
Target Start/End: Complemental strand, 41956016 - 41955957
Alignment:
Q  319 tttttaaggggtttttgttcgagccggtattatg-tggcaaccgatttccccttgtattt 377  Q
    |||||||||| ||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  41956016 tttttaagggatttttgttcgagccggtgttattatggcaaccgatttccccttgtattt 41955957  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 12172954 - 12173015
Alignment:
Q  313 gggtggtttttaaggggtttttgttcgagccggt-attatgtggcaaccgatttccccttgt 373  Q
    |||||||||||||||||||||||||||||| | |  || |||||||||||||||||||||||    
T  12172954 gggtggtttttaaggggtttttgttcgagctgatgtttgtgtggcaaccgatttccccttgt 12173015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 46757305 - 46757370
Alignment:
Q  312 ggggtggtttttaaggggtttttgttcgagccggtatta-tgtggcaaccgatttccccttgtatt 376  Q
    |||||||||||||| |||||||||||||||| ||| ||| |||||||| |||||||||||| ||||    
T  46757305 ggggtggtttttaaagggtttttgttcgagctggtgttattgtggcaatcgatttccccttatatt 46757370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 42442143 - 42442081
Alignment:
Q  312 ggggtggtttttaaggggtttttgttcgagccggtattat-gtggcaaccgatttccccttgt 373  Q
    |||||||||||||||||||||||||||||| |||| || |  |||||||||||||||| ||||    
T  42442143 ggggtggtttttaaggggtttttgttcgagtcggtgttttaatggcaaccgatttcccgttgt 42442081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 43268739 - 43268679
Alignment:
Q  313 gggtggtttttaa-ggggtttttgttcgagccggt-attatgtggcaaccgatttcccctt 371  Q
    ||||||||||||| |||||||||||||||||||||  || || ||||||||||||||||||    
T  43268739 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttcccctt 43268679  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 8463097 - 8463040
Alignment:
Q  319 tttttaaggggtttttgttcgagccg--gtattatgtggcaaccgatttccccttgtat 375  Q
    ||||||||||||||||||||||||||  || || ||||||||||||||| |||||||||    
T  8463097 tttttaaggggtttttgttcgagccgacgt-ttttgtggcaaccgattttcccttgtat 8463040  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 26990600 - 26990664
Alignment:
Q  312 ggggtggtttttaaggggtttttgttcgagccggt-attatgtggcaaccgatttccccttgtat 375  Q
    ||||||||||||||||| |||||||| ||||||||  || || ||||| |||||| |||||||||    
T  26990600 ggggtggtttttaagggatttttgtttgagccggtgcttgtgcggcaatcgattttcccttgtat 26990664  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 311 - 375
Target Start/End: Complemental strand, 46691983 - 46691918
Alignment:
Q  311 tggggtggtttttaaggggtttttgttcgagccggt-attatgtggcaaccgatttccccttgtat 375  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  46691983 tggggtggtttttaaggggtttttgttcgagccggtgtttatgtggcaaccgatttccccttgtat 46691918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 49035983 - 49035928
Alignment:
Q  319 tttttaaggggtttttgttcgagccggtatt-atgtggcaaccgatttccccttgt 373  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||    
T  49035983 tttttaaggggtttttgttcgaaccggtgtttatgtggcaaccgatttccccttgt 49035928  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 374
Target Start/End: Original strand, 22197666 - 22197730
Alignment:
Q  311 tggggtggtttt-taaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgta 374  Q
    |||||||||||| ||||||||||||||||||| |||| || ||||| || |||||||||||||||    
T  22197666 tggggtggttttttaaggggtttttgttcgagacggtgttttgtggtaatcgatttccccttgta 22197730  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 22240155 - 22240091
Alignment:
Q  311 tggggtggttttt-aaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgta 374  Q
    ||||||||||||| |||||||||||||||||| |||| || ||||| || |||||||||||||||    
T  22240155 tggggtggttttttaaggggtttttgttcgagacggtgttttgtggtaatcgatttccccttgta 22240091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 41702867 - 41702927
Alignment:
Q  316 tggtttttaaggggtttttgttcgagccggt-attatgtggcaaccgatttccccttgtat 375  Q
    |||||||||||||||||||||||||||||||  || || ||||||||| ||||||||||||    
T  41702867 tggtttttaaggggtttttgttcgagccggtgtttgtgcggcaaccgacttccccttgtat 41702927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 36615936 - 36615874
Alignment:
Q  311 tggggtggttttt-aaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgt 373  Q
    ||||||||||||| || |||||||||||||||| ||  || |||||||||||||||||||||||    
T  36615936 tggggtggttttttaaagggtttttgttcgagctggagtt-tgtggcaaccgatttccccttgt 36615874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 30655727 - 30655671
Alignment:
Q  319 tttttaaggggtttttgttcgagccggtattatgtg--gcaaccgatttccccttgt 373  Q
    |||||||| |||||||||||||| || |||| ||||  |||||||||||||||||||    
T  30655727 tttttaagaggtttttgttcgagtcgatattttgtgtggcaaccgatttccccttgt 30655671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 375
Target Start/End: Original strand, 43397634 - 43397702
Alignment:
Q  307 tgtttggggtggtttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtat 375  Q
    |||| |||||||||||| | |||||||||||||||| | | || ||||||||| ||||| || ||||||    
T  43397634 tgttaggggtggttttttaagggtttttgttcgagcagttgttttgtggcaacagattttcctttgtat 43397702  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 8431552 - 8431484
Alignment:
Q  310 ttggggtggtttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtattta 378  Q
    ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||    
T  8431552 ttggggtggtttttaaggggtttttgttcgagccggtgttttgttgcaaccgatttccccttgtgttta 8431484  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 376
Target Start/End: Complemental strand, 43073182 - 43073115
Alignment:
Q  309 tttggggtggtttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtatt 376  Q
    |||||||||||||||||||||||||||||||||||||| || |  |||||||||||||||||||||||    
T  43073182 tttggggtggtttttaaggggtttttgttcgagccggtgttttaaggcaaccgatttccccttgtatt 43073115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 28934870 - 28934808
Alignment:
Q  311 tggggtggttttt-aaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgt 373  Q
    ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||    
T  28934870 tggggtggttttttaaggggtttttgttcgagccggtgtt-tgtggcaaccgatttccccttgt 28934808  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 31525363 - 31525424
Alignment:
Q  313 gggtggtttttaaggggtttttgttcgagccggt-attatgtggcaaccgatttccccttgt 373  Q
    |||||||||||||||||||||||||||||||| |  || |||||||||||||||||||||||    
T  31525363 gggtggtttttaaggggtttttgttcgagccgttgtttgtgtggcaaccgatttccccttgt 31525424  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 10454279 - 10454342
Alignment:
Q  313 gggtggtttttaaggggtttttgttcgagccgg-tattatgtggcaaccgatttccccttgtat 375  Q
    ||||||||||||||||||||||||| ||||||| | |  |||||||||||||||||||||||||    
T  10454279 gggtggtttttaaggggtttttgtttgagccggctttcttgtggcaaccgatttccccttgtat 10454342  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 53349397 - 53349464
Alignment:
Q  309 tttggggtggtttttaaggggtttttgttcgagccggt-attatgtggcaaccgatttccccttgtat 375  Q
    ||||||||||||||||||||||||||||| ||||||||  || || |||||||||||| |||||||||    
T  53349397 tttggggtggtttttaaggggtttttgtttgagccggtgtttgtgcggcaaccgattttcccttgtat 53349464  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 375
Target Start/End: Complemental strand, 44656360 - 44656298
Alignment:
Q  313 gggtggtttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtat 375  Q
    |||||||||||||||| |||||||||||| | || |||| ||||||||||||| |||||||||    
T  44656360 gggtggtttttaagggatttttgttcgagtctgtgttatatggcaaccgattttcccttgtat 44656298  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 46750208 - 46750275
Alignment:
Q  309 tttggggtggtttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtattt 377  Q
    |||||||||||||||||||| ||||||||||| ||||| || || |||||||||||| || ||||||||    
T  46750208 tttggggtggtttttaaggg-tttttgttcgaaccggtgttttgcggcaaccgattttcctttgtattt 46750275  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 20701152 - 20701206
Alignment:
Q  319 tttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgt 373  Q
    ||||||||||||||||||||||||||   || |||||||| ||||||||||||||    
T  20701152 tttttaaggggtttttgttcgagccgtagttgtgtggcaatcgatttccccttgt 20701206  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 42881885 - 42881943
Alignment:
Q  319 tttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtattt 377  Q
    ||||||||| ||||||||| |||||||| |  |||||||| ||||||||||||||||||    
T  42881885 tttttaaggcgtttttgtttgagccggtgtattgtggcaatcgatttccccttgtattt 42881943  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 28956952 - 28957005
Alignment:
Q  319 tttttaaggggtttttgttcgagccggt-attatgtggcaaccgatttcccctt 371  Q
    |||| |||||||||||||||||||||||  || |||||||||||||||||||||    
T  28956952 ttttaaaggggtttttgttcgagccggtgtttgtgtggcaaccgatttcccctt 28957005  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 9358883 - 9358823
Alignment:
Q  313 gggtggtttttaa-ggggtttttgttcgagccggt-attatgtggcaaccgatttcccctt 371  Q
    ||||||||||||| |||||||||||||||||||||  || || ||||||||||||||||||    
T  9358883 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttcccctt 9358823  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 371
Target Start/End: Original strand, 47820897 - 47820957
Alignment:
Q  313 gggtggtttttaa-ggggtttttgttcgagccggt-attatgtggcaaccgatttcccctt 371  Q
    ||||||||||||| |||||||||||||||||||||  || || ||||||||||||||||||    
T  47820897 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttcccctt 47820957  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 343
Target Start/End: Complemental strand, 55166956 - 55166925
Alignment:
Q  312 ggggtggtttttaaggggtttttgttcgagcc 343  Q
    ||||||||||||||||||||||||||||||||    
T  55166956 ggggtggtttttaaggggtttttgttcgagcc 55166925  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 378
Target Start/End: Original strand, 38908666 - 38908734
Alignment:
Q  310 ttggggtggtttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtattta 378  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||| |||||||| ||||||||||||    
T  38908666 ttggggtggtttttaaggggtttttgttcgaaccggtgttttgtggctaccgattttcccttgtattta 38908734  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 41419611 - 41419682
Alignment:
Q  307 tgtttggggtggtttttaaggggtttttgttcgagccggtatta-tgtggcaaccgatttccccttgtattt 377  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||||||||||    
T  41419611 tgttttgggtggtttttaaggggtttttgttcgagtcggtgttattatggcaaccgatttccccttgtattt 41419682  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 14732473 - 14732409
Alignment:
Q  313 gggtggtttttaaggggtttttgttcgagccggta-ttatgtggcaaccgatttccccttgtatt 376  Q
    |||||||||||||||||||||||||||||| |||| || || || ||||||||||||||||||||    
T  14732473 gggtggtttttaaggggtttttgttcgagctggtatttttgcggtaaccgatttccccttgtatt 14732409  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 41378333 - 41378272
Alignment:
Q  312 ggggtggtttttaa-ggggtttttgttcgagccggtatta-tgtggcaaccgatttcccctt 371  Q
    |||||||||||||| ||||||||| ||||||||||  ||  |||||||||||||||||||||    
T  41378333 ggggtggtttttaaaggggtttttattcgagccggagtttgtgtggcaaccgatttcccctt 41378272  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 25539815 - 25539883
Alignment:
Q  309 tttggggtggtttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtattt 377  Q
    |||||||||||||||||||||||||||||||||||| | ||   ||||||||||||||| |||||||||    
T  25539815 tttggggtggtttttaaggggtttttgttcgagccgatgtttgatggcaaccgatttcctcttgtattt 25539883  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 2292168 - 2292222
Alignment:
Q  319 tttttaaggggtttttgttcgagccggtattatgt--ggcaaccgatttcccctt 371  Q
    |||||||||||||||||||||||||||| || |||  ||||||||||||||||||    
T  2292168 tttttaaggggtttttgttcgagccggtgttttgttaggcaaccgatttcccctt 2292222  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 376
Target Start/End: Complemental strand, 3677929 - 3677861
Alignment:
Q  308 gtttggggtggtttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtatt 376  Q
    |||| ||||||||||||||||||||||||| ||||| || |  || |||||||||||  ||||||||||    
T  3677929 gttttgggtggtttttaaggggtttttgtttgagccagtgtattgcggcaaccgattgtcccttgtatt 3677861  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 22887211 - 22887275
Alignment:
Q  313 gggtggtttttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtattt 377  Q
    ||||||||||||||||||||||||| || || || || ||||||||| ||||| ||||| |||||    
T  22887211 gggtggtttttaaggggtttttgtttgaacctgtcttttgtggcaactgattttcccttatattt 22887275  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 819263 - 819201
Alignment:
Q  311 tggggtggttttt-aaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgt 373  Q
    ||||||||||||| ||||||||||||||||||  ||| || |||||||||||||||||| ||||    
T  819263 tggggtggttttttaaggggtttttgttcgagttggtgtt-tgtggcaaccgatttccctttgt 819201  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 346
Target Start/End: Complemental strand, 23173107 - 23173074
Alignment:
Q  313 gggtggtttttaaggggtttttgttcgagccggt 346  Q
    ||||||||||||||||| ||||||||||||||||    
T  23173107 gggtggtttttaagggggttttgttcgagccggt 23173074  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 10246909 - 10246969
Alignment:
Q  312 ggggtggtttttaa-ggggtttttgttcgagccggtattatgtggcaaccgatttcccctt 371  Q
    |||||||||||||| ||||||||||||||||||||| || |||| |||||||||| |||||    
T  10246909 ggggtggtttttaaaggggtttttgttcgagccggtgttgtgtgacaaccgattttccctt 10246969  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 15859092 - 15859154
Alignment:
Q  312 ggggtggttttt--aaggggtttttgttcgagccggt-attatgtggcaaccgatttcccctt 371  Q
    ||||||||||||  |||||||||||||||||||||||  || | |||||||||||||||||||    
T  15859092 ggggtggttttttaaaggggtttttgttcgagccggtgtttgtttggcaaccgatttcccctt 15859154  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 47571694 - 47571638
Alignment:
Q  321 tttaaggggtttttgttcgagccggtattatgtggcaaccgatttccccttgtattta 378  Q
    ||||||||||||||||| |||||||| || |||||||||| |||| ||||||||||||    
T  47571694 tttaaggggtttttgtttgagccggtgtt-tgtggcaaccaattttcccttgtattta 47571638  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 32183274 - 32183336
Alignment:
Q  312 ggggtggttttt--aaggggtttttgttcgagccggt-attatgtggcaaccgatttcccctt 371  Q
    ||||||||||||  |||||||||||||||||||||||  || | |||||||||||||||||||    
T  32183274 ggggtggttttttaaaggggtttttgttcgagccggtgtttgtatggcaaccgatttcccctt 32183336  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 16572074 - 16572134
Alignment:
Q  319 tttttaaggggtttttgttcgagccggtattat-gtggcaaccgatttccccttgtattta 378  Q
    ||||||| ||| |||||||||| ||||| || | | |||||||||||||||||||||||||    
T  16572074 tttttaaaggggttttgttcgaaccggtgtttttgcggcaaccgatttccccttgtattta 16572134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 42390906 - 42390874
Alignment:
Q  314 ggtggtttttaaggggtttttgttcgagccggt 346  Q
    |||||||||||||||||||||||| ||||||||    
T  42390906 ggtggtttttaaggggtttttgtttgagccggt 42390874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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