View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15643_low_1 (Length: 421)
Name: NF15643_low_1
Description: NF15643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15643_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 43440143 - 43440567
Alignment:
| Q |
1 |
atgcgttcccttgagcttcctttgtttttcctctcttctccgtttctctttccggtttaatgagtttgagtacccttttagtgtgtgtttggatatgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43440143 |
atgcgttcccttgagcttcctttgtttttcctctcttctccgtttcgttttccggtttaatgagtttgagtacccttttagtgtgtgtttggatatgatt |
43440242 |
T |
|
| Q |
101 |
ttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagctgggttttatagctttaacgttgcgttgatttgctgc |
200 |
Q |
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|| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
43440243 |
ttaaaaccacatcttgttaaaatatcatttcccaatgcactccaatcatcaaaattgtgaaactgggttttatagctttaacgttgcggtgatttgctgc |
43440342 |
T |
|
| Q |
201 |
cgtgcttttctcaattctaccatgcta-ccaaacaggccattagtctat------------ttctttgttaattaaaagaattgcatatatcaataatct |
287 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
43440343 |
cgtgcttttctcaattctaccatgctaggcaaacaggccattagtctatttatataaaatcttctttgttaattaaaagaattgcatatatcaatcatct |
43440442 |
T |
|
| Q |
288 |
cacactgttttttacaagacacggtgcatatatagctttattnnnnnnnttatggtagccttctagtttctaagaaaagatgacaatgttcattaggaat |
387 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43440443 |
cacactgttttttacaagacacggtgcatatatagttttattaaaaaaattatggtagccttctagtttctaagaaaagatgactatgttcattaggaat |
43440542 |
T |
|
| Q |
388 |
taaacctcaagataagtataatcta |
412 |
Q |
| |
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| T |
43440543 |
taaacctcaagataagtataatcta |
43440567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 85 - 242
Target Start/End: Complemental strand, 11051860 - 11051701
Alignment:
| Q |
85 |
gtgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagct-gggttttatagctttaacg |
183 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || |||||||| ||||| | ||||||| | ||||| | |
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| T |
11051860 |
gtgtttggatatgattttgaaaccacatcacgttaaaataccacttcccaatacactgtagtcctcaaaattatgaagttggggttttgaaactttagtg |
11051761 |
T |
|
| Q |
184 |
tt-gcgttgatttgctgccgtgcttttctcaattctaccatgctaccaaacaggccatta |
242 |
Q |
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|| || |||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
11051760 |
ttggctgtgatttgctgccgtgcttttctcaattctaccgagctaccaaacagaccatta |
11051701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 34122956 - 34123122
Alignment:
| Q |
77 |
tttagtgtgtgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagctgggttttatagc |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
34122956 |
tttagtgtgtgtttggatatgattttgaaaccacatcacgttaaaatatcactttccaatgcactccaatcctcaaaattgtgaagctgggttttgaagc |
34123055 |
T |
|
| Q |
177 |
tttaacgttgcgttgatttgctgccgtgcttttctcaattctaccatgctaccaaacaggccattag |
243 |
Q |
| |
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|||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34123056 |
tttagcgttgccgtgatttgctgctgtgcttttctcaattctaccgtgctaccaaacaggccattag |
34123122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 83 - 240
Target Start/End: Complemental strand, 48957742 - 48957585
Alignment:
| Q |
83 |
gtgtgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagctgggttttatagctttaac |
182 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||| |||||||| ||||||| | |
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| T |
48957742 |
gtgtgtttggatatgattttgaaaccatatcacgttaaaatatcgcttcccaattcactccaatcctcaaaattgtgaagttgggttttgaagctttagc |
48957643 |
T |
|
| Q |
183 |
gttgcgttgatttgctgccgtgcttttctcaattctaccatgctaccaaacaggccat |
240 |
Q |
| |
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||||| |||||| || |||| ||||||||||||||||| |||||||||||| ||||| |
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|
| T |
48957642 |
gttgccgtgatttccttccgtccttttctcaattctaccgtgctaccaaacatgccat |
48957585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 92 - 232
Target Start/End: Original strand, 40490333 - 40490470
Alignment:
| Q |
92 |
gatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatc-aaaattgtgaagctgggttttatagctttaacgttgcgtt |
190 |
Q |
| |
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|||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| || |||||| ||||||||||| || ||||||| | |||| | |
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| T |
40490333 |
gatatgattttgaaaccacaccacgttaaaataccactttccaatgcactccaatcctcaaaaattttgaagctgggtgttgaagctttagcattgccat |
40490432 |
T |
|
| Q |
191 |
gatttgctgccgtgcttttctcaattctaccatgctaccaaa |
232 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||| |||| |
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| T |
40490433 |
gatttg----cgtgcttttctcaattctaccgtgctatcaaa |
40490470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 4124078 - 4124001
Alignment:
| Q |
86 |
tgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagc |
163 |
Q |
| |
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||||||||| ||| ||||||||||||||| ||| |||||| |||||| |||||| || ||| ||||||||||||| |
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| T |
4124078 |
tgtttggatgtgagtttgaaaccacatcatgttgcaatatcgtgtcccaaagcactcgaaccatgaaaattgtgaagc |
4124001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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