View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15643_low_5 (Length: 255)
Name: NF15643_low_5
Description: NF15643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15643_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 4878558 - 4878327
Alignment:
| Q |
15 |
aaagattgacatgttttgtaaatagtacatatgttgcatataccctcataagctgtttattggacacttaattccaatcataaataggtacatggaatcg |
114 |
Q |
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| T |
4878558 |
aaagattgacatgttttgtaaatagtacatatgttgcatataccctcataagctgtttattggaaacttaattccaatcataaataggtacatggaatcg |
4878459 |
T |
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| Q |
115 |
agatcacggtagcggacaaaatattgaactagtatataagagtggatagaaaagaatacaccggtacatgataaatgtattctagcattttgcaaatttg |
214 |
Q |
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| T |
4878458 |
agatcacggtagcgaacaaaatattgaactagtatataagagtggatagaaaagaatacaccggtacatgataaatgtattctagcattttgcaaatttg |
4878359 |
T |
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| Q |
215 |
tgcatatgcagtttttggcttttgagaataat |
246 |
Q |
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| T |
4878358 |
tgcatatgcagtttttggcttttgagaataat |
4878327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 12534044 - 12534141
Alignment:
| Q |
133 |
aaatattgaactagtatataagagtggatagaaaagaatacaccggtacatgataaatgtattctagcattttgcaaatttgtgcatatgcagttttt |
230 |
Q |
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| T |
12534044 |
aaatattgaattagtatataagaatggataaaatagaatattctggtccataataaatgtattccaccattttgcaaatttgtgcatatgcacttttt |
12534141 |
T |
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