View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15644_high_11 (Length: 431)

Name: NF15644_high_11
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15644_high_11
NF15644_high_11
[»] chr5 (28 HSPs)
chr5 (15-419)||(37268131-37268533)
chr5 (182-294)||(26397286-26397398)
chr5 (182-294)||(40632648-40632759)
chr5 (229-294)||(23257177-23257242)
chr5 (200-294)||(21825190-21825284)
chr5 (198-294)||(21269879-21269975)
chr5 (198-294)||(21271893-21271989)
chr5 (201-291)||(7123934-7124024)
chr5 (15-124)||(40632803-40632912)
chr5 (231-294)||(13390352-13390415)
chr5 (200-294)||(37414637-37414730)
chr5 (229-294)||(17945875-17945940)
chr5 (15-124)||(26397447-26397556)
chr5 (230-294)||(1585483-1585547)
chr5 (202-294)||(24251286-24251378)
chr5 (220-294)||(38099573-38099646)
chr5 (230-291)||(18149364-18149425)
chr5 (229-294)||(20251511-20251576)
chr5 (230-294)||(23264111-23264175)
chr5 (200-294)||(41211548-41211641)
chr5 (229-294)||(15504908-15504973)
chr5 (229-294)||(17696034-17696099)
chr5 (17-121)||(16119822-16119926)
chr5 (219-294)||(39565377-39565450)
chr5 (17-63)||(13390573-13390619)
chr5 (217-294)||(9194543-9194620)
chr5 (18-121)||(20251668-20251771)
chr5 (230-294)||(16120021-16120085)
[»] chr4 (39 HSPs)
chr4 (15-294)||(44546426-44546705)
chr4 (200-294)||(1463318-1463412)
chr4 (182-294)||(17186235-17186347)
chr4 (217-294)||(13159699-13159776)
chr4 (201-294)||(46191195-46191288)
chr4 (194-294)||(39868303-39868402)
chr4 (200-294)||(22322413-22322507)
chr4 (206-294)||(24010487-24010575)
chr4 (219-294)||(135821-135895)
chr4 (200-294)||(42396697-42396790)
chr4 (205-294)||(37013918-37014007)
chr4 (180-290)||(11821460-11821571)
chr4 (200-294)||(26893330-26893423)
chr4 (200-293)||(18430433-18430525)
chr4 (217-293)||(20177379-20177455)
chr4 (200-294)||(14453918-14454011)
chr4 (200-294)||(55284841-55284935)
chr4 (15-124)||(17186083-17186192)
chr4 (230-294)||(17712673-17712737)
chr4 (206-294)||(41007223-41007311)
chr4 (18-121)||(23001923-23002026)
chr4 (200-294)||(36825778-36825872)
chr4 (218-294)||(16736169-16736246)
chr4 (217-294)||(21141925-21142002)
chr4 (217-294)||(52762930-52763006)
chr4 (15-126)||(11821311-11821423)
chr4 (231-294)||(28709179-28709242)
chr4 (200-294)||(28740815-28740909)
chr4 (15-124)||(39868137-39868246)
chr4 (17-121)||(28708969-28709072)
chr4 (230-294)||(30036633-30036697)
chr4 (230-294)||(48782508-48782572)
chr4 (18-121)||(28068033-28068136)
chr4 (217-287)||(7272683-7272753)
chr4 (17-119)||(13159863-13159965)
chr4 (229-294)||(13317640-13317705)
chr4 (265-294)||(39683114-39683143)
chr4 (226-294)||(2632751-2632819)
chr4 (230-294)||(53084602-53084666)
[»] chr8 (14 HSPs)
chr8 (15-294)||(17936141-17936419)
chr8 (231-294)||(29934709-29934772)
chr8 (217-294)||(15172815-15172892)
chr8 (217-294)||(39143314-39143390)
chr8 (17-63)||(29934503-29934549)
chr8 (200-294)||(39919297-39919390)
chr8 (17-121)||(15353167-15353271)
chr8 (229-294)||(21313805-21313872)
chr8 (231-294)||(1219198-1219261)
chr8 (200-294)||(19712716-19712809)
chr8 (217-294)||(15353349-15353425)
chr8 (225-294)||(20877239-20877308)
chr8 (218-294)||(8053461-8053537)
chr8 (251-294)||(9018101-9018144)
[»] chr7 (25 HSPs)
chr7 (15-294)||(7566944-7567216)
chr7 (182-294)||(22681441-22681553)
chr7 (182-294)||(6459060-6459171)
chr7 (216-294)||(41242163-41242241)
chr7 (200-291)||(14241280-14241371)
chr7 (201-294)||(42453622-42453715)
chr7 (200-290)||(13427953-13428042)
chr7 (200-294)||(38889909-38890002)
chr7 (15-123)||(6458908-6459016)
chr7 (201-291)||(17263376-17263465)
chr7 (200-294)||(45140133-45140226)
chr7 (230-294)||(21120598-21120662)
chr7 (230-294)||(32215580-32215644)
chr7 (225-294)||(8752496-8752565)
chr7 (201-294)||(22358695-22358787)
chr7 (15-124)||(22681603-22681712)
chr7 (202-291)||(38651280-38651368)
chr7 (217-294)||(3091985-3092061)
chr7 (230-294)||(20398878-20398942)
chr7 (230-294)||(43656138-43656201)
chr7 (248-294)||(39321910-39321956)
chr7 (17-58)||(644833-644874)
chr7 (17-58)||(22358908-22358949)
chr7 (265-294)||(25145617-25145646)
chr7 (217-286)||(29802784-29802852)
[»] chr2 (26 HSPs)
chr2 (182-294)||(45701188-45701300)
chr2 (194-294)||(3376112-3376211)
chr2 (15-126)||(45468304-45468415)
chr2 (15-127)||(45701340-45701452)
chr2 (182-294)||(45468150-45468263)
chr2 (199-294)||(1206418-1206513)
chr2 (200-294)||(12915741-12915835)
chr2 (201-294)||(17607636-17607729)
chr2 (197-294)||(28543754-28543851)
chr2 (217-294)||(2220097-2220174)
chr2 (214-294)||(28209993-28210073)
chr2 (226-294)||(42184102-42184170)
chr2 (217-294)||(30515782-30515858)
chr2 (229-294)||(39994684-39994749)
chr2 (230-294)||(10005260-10005324)
chr2 (226-294)||(26405009-26405077)
chr2 (230-291)||(26438361-26438422)
chr2 (230-294)||(28157716-28157780)
chr2 (200-255)||(11123651-11123705)
chr2 (15-133)||(3375946-3376064)
chr2 (201-290)||(32603304-32603392)
chr2 (217-294)||(33006689-33006765)
chr2 (217-294)||(41647138-41647215)
chr2 (230-294)||(18556064-18556128)
chr2 (265-294)||(22653877-22653906)
chr2 (17-58)||(30515999-30516040)
[»] chr1 (17 HSPs)
chr1 (182-294)||(20819603-20819715)
chr1 (194-294)||(24509317-24509416)
chr1 (200-294)||(10349520-10349614)
chr1 (15-133)||(20819752-20819870)
chr1 (200-294)||(7637638-7637731)
chr1 (15-124)||(24509472-24509581)
chr1 (225-294)||(39581430-39581499)
chr1 (229-292)||(1870497-1870560)
chr1 (200-294)||(44955685-44955778)
chr1 (229-294)||(16632667-16632732)
chr1 (236-294)||(16423196-16423254)
chr1 (200-294)||(33567153-33567247)
chr1 (253-294)||(12526941-12526982)
chr1 (229-294)||(34505246-34505311)
chr1 (218-294)||(12396335-12396408)
chr1 (207-294)||(33855469-33855556)
chr1 (207-294)||(33925366-33925453)
[»] chr6 (17 HSPs)
chr6 (202-294)||(5675491-5675583)
chr6 (200-294)||(14781983-14782077)
chr6 (200-294)||(31848054-31848147)
chr6 (200-294)||(18489720-18489813)
chr6 (206-294)||(4103083-4103171)
chr6 (200-294)||(16477626-16477720)
chr6 (15-133)||(5675642-5675760)
chr6 (200-293)||(12607242-12607334)
chr6 (201-294)||(25186763-25186856)
chr6 (229-291)||(2854115-2854177)
chr6 (201-294)||(9756473-9756567)
chr6 (15-130)||(4103226-4103341)
chr6 (230-291)||(25026737-25026798)
chr6 (230-294)||(31794673-31794737)
chr6 (217-294)||(5195551-5195627)
chr6 (78-120)||(9756360-9756402)
chr6 (17-58)||(5195369-5195410)
[»] scaffold1251 (2 HSPs)
scaffold1251 (182-291)||(861-969)
scaffold1251 (15-124)||(1223-1332)
[»] chr3 (16 HSPs)
chr3 (200-294)||(7638885-7638979)
chr3 (200-294)||(7937442-7937535)
chr3 (197-293)||(10752217-10752313)
chr3 (230-294)||(10773250-10773314)
chr3 (200-294)||(30045229-30045322)
chr3 (204-294)||(30188542-30188632)
chr3 (200-294)||(19667485-19667575)
chr3 (229-294)||(21477741-21477806)
chr3 (225-294)||(29685635-29685704)
chr3 (229-294)||(41748781-41748846)
chr3 (232-294)||(25280389-25280451)
chr3 (201-294)||(7676770-7676863)
chr3 (229-294)||(12215533-12215597)
chr3 (230-294)||(16898654-16898718)
chr3 (18-58)||(31644174-31644214)
chr3 (15-121)||(25280559-25280665)
[»] scaffold0461 (2 HSPs)
scaffold0461 (200-294)||(2191-2285)
scaffold0461 (200-294)||(9127-9221)
[»] scaffold0124 (1 HSPs)
scaffold0124 (200-294)||(40299-40393)
[»] scaffold0074 (1 HSPs)
scaffold0074 (200-294)||(36042-36136)
[»] scaffold0153 (1 HSPs)
scaffold0153 (200-294)||(24922-25015)
[»] scaffold0267 (1 HSPs)
scaffold0267 (230-294)||(10996-11060)
[»] scaffold0423 (1 HSPs)
scaffold0423 (229-294)||(10015-10081)
[»] scaffold0116 (1 HSPs)
scaffold0116 (229-294)||(42189-42254)
[»] scaffold0334 (1 HSPs)
scaffold0334 (200-294)||(3037-3131)
[»] scaffold1822 (1 HSPs)
scaffold1822 (18-121)||(1200-1303)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 15 - 419
Target Start/End: Original strand, 37268131 - 37268533
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37268131 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 37268230  T
Q  115 tttgtataggtgttgtctaggtgttaacannnnnnnnnnnnnnnnnnnaattggtgtgacatgtttctgtgtcactcatctagtttttgtaacagacttt 214  Q
    ||||||||||||||| |||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37268231 tttgtataggtgttggctaggtgttaacattttttcttttttctttttaattggtgtgacatgtttctgtgtcactcatctagtttttgtaacagacttt 37268330  T
Q  215 gagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgttnnnnnnnnnnnnnntattct 314  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||              ||||||    
T  37268331 gagtgattcgtcacttttagcacaccttgtacggggtgaatcacttttcctttgagcaatatattccattttgatttgtt--aaaaaaaaaatatattct 37268428  T
Q  315 tgcaaatattcattcaaaattttaaatgatatataaatatacttaaaagcatggaccaaagagatgatacaaaaattttatggtataaaaaagcaggaca 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  37268429 tgcaaatattcattcaaaattttaaatgatatataaatatacttaaaagcatggaccaaagagatgatacaaaaattttatggaataaaaaagaaggaca 37268528  T
Q  415 atttt 419  Q
    |||||    
T  37268529 atttt 37268533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 26397398 - 26397286
Alignment:
Q  182 tgtgtcactcatctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattcc 281  Q
    ||||||| ||| |||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  26397398 tgtgtcagtcacctagtttttgtatcagactttgagcgattcatcatttttagcacaccttgtgcggggtgaatcactcttcttttgagcaatatattcc 26397299  T
Q  282 attttgatttgtt 294  Q
    |||||||||||||    
T  26397298 attttgatttgtt 26397286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 40632759 - 40632648
Alignment:
Q  182 tgtgtcactcatctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattcc 281  Q
    ||||||| ||| |||||||||||| ||||||||||||||||| ||  |||||||||||||| |||||||||||||||| ||| ||||||||||||||| |    
T  40632759 tgtgtcagtcacctagtttttgtatcagactttgagtgattcatcg-ttttagcacaccttatgcggggtgaatcactcttcttttgagcaatatatttc 40632661  T
Q  282 attttgatttgtt 294  Q
    |||||||||||||    
T  40632660 attttgatttgtt 40632648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 23257177 - 23257242
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  23257177 ttttagcacaccttgtgcggggtgaatcacttttcgtttgaacaatatattccattttgatttgtt 23257242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 21825190 - 21825284
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcac-ttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| ||| ||| ||  ||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  21825190 tttgtaacagacgttgggtgttttctcacttt-agcacaccttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttgtt 21825284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 21269975 - 21269879
Alignment:
Q  198 tttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||| |  |||||| ||||  |||||||||||||||||||||||||||||| ||||||  |||||| ||||||| |||||||||||||||    
T  21269975 tttttgtaacatatattgagtaattcaccacttttagcacaccttgtgcggggtgaattacttttggtttgagtaatatataccattttgatttgtt 21269879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 21271989 - 21271893
Alignment:
Q  198 tttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||| |  |||||| ||||  |||||||||||||||||||||||||||||| ||||||  |||||| ||||||| |||||||||||||||    
T  21271989 tttttgtaacatatattgagtaattcaccacttttagcacaccttgtgcggggtgaattacttttggtttgagtaatatataccattttgatttgtt 21271893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 291
Target Start/End: Complemental strand, 7124024 - 7123934
Alignment:
Q  201 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgattt 291  Q
    |||||| | |||||| ||||||| |||||||||||||||||| |||||| ||||||||||| | |||||| |||||||| |||||||||||    
T  7124024 ttgtaataaactttgggtgattcatcacttttagcacaccttatgcgggttgaatcactttgcttttgagaaatatatttcattttgattt 7123934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 40632912 - 40632803
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||||| |||| |||||||||||||| |||||||    |||  | ||||| |||| | ||||||||||||||||||||||||| |    
T  40632912 aatattgtcgaaaaggtgaagctgaattcttttttatggctctcgtcaaattctgtaactttggcatttgattttcatgattggtggaggcacccacttc 40632813  T
Q  115 tttgtatagg 124  Q
    ||||||||||    
T  40632812 tttgtatagg 40632803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 13390415 - 13390352
Alignment:
Q  231 ttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||    
T  13390415 ttagcacatcttgtgcggggtgaatcacttctcttttgagctatatattccattttgatttgtt 13390352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 37414730 - 37414637
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||| |||| ||  |||||||| ||||||||||||| |||||| |||| |||| |||||||||||||| ||||||| |||||||    
T  37414730 tttgtaacagactttaagtgttttttcactttt-gcacaccttgtgcagggtgattcacctttcttttgagcaatatatcccattttaatttgtt 37414637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 17945940 - 17945875
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||||||||||||| |   |||||| |||||||||||||||||||||||    
T  17945940 ttttagcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgatttgtt 17945875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 26397556 - 26397447
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||||| || | |||||||||||||| |||||||    |||  | ||||| |||| | ||||||||||||||||||||||||| |    
T  26397556 aatattgtcgaaaaggtgaagctggattcttttttatggctctcgtcaaattctgtatctttggcttttggttttcatgattggtggaggcacccacttc 26397457  T
Q  115 tttgtatagg 124  Q
    ||||||||||    
T  26397456 tttgtatagg 26397447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 1585483 - 1585547
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||| |||||||||||||| | | |||||||||||||||| |||||||||||||    
T  1585483 tttagcacaccttgtacggggtgaatcactctgcttttgagcaatatattcaattttgatttgtt 1585547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 24251286 - 24251378
Alignment:
Q  202 tgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| || ||| ||||||| ||||||||| ||||||||||||||||||||||||||  | ||||| |||||||||  |||||| ||||||    
T  24251286 tgtaacatacattgggtgattcatcacttttaacacaccttgtgcggggtgaatcacttagcttttgaacaatatattttattttggtttgtt 24251378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 38099573 - 38099646
Alignment:
Q  220 attcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||| ||||| ||| ||||||||||||||||||||||| ||||  |||||| |||||||||||||||||||||||    
T  38099573 attcatcactcttatcacaccttgtgcggggtgaatca-tttttgtttgagtaatatattccattttgatttgtt 38099646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 18149425 - 18149364
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgattt 291  Q
    ||||||||||||||||||||||||| ||| || | ||||||||||||||| |||||||||||    
T  18149425 tttagcacaccttgtgcggggtgaaccaccttacttttgagcaatatatttcattttgattt 18149364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 20251576 - 20251511
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||| ||||||| ||| | || |||| |||||||||||||||||||||||||    
T  20251576 ttttagcacaccttgtgcagggtgaaacacctctcttttgtgcaatatattccattttgatttgtt 20251511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 23264175 - 23264111
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||||||| ||||  ||  ||||||||||||| |||||||||||||||    
T  23264175 tttagcacaccttgtgcggggtgaaacactactctattgagcaatatatcccattttgatttgtt 23264111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 41211548 - 41211641
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||  ||| |   |||||||| ||||||||||||| |||||| |||| |||| |||||| ||||||| |||||||||||||||    
T  41211548 tttgtaacagactttaggtgttctttcactttt-gcacaccttgtgcagggtgattcacctttcttttgagtaatatatcccattttgatttgtt 41211641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 15504908 - 15504973
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||| ||||||||||||||||||||||||| |   ||| || |||||||||||||||||||||||    
T  15504908 ttttaacacaccttgtgcggggtgaatcactctatttttaagtaatatattccattttgatttgtt 15504973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 17696099 - 17696034
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||| ||||||||| |   |||||| ||||||||| |||||||||||||    
T  17696099 ttttagcacaccttgtgcgggatgaatcactctgtttttgagtaatatattctattttgatttgtt 17696034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 16119822 - 16119926
Alignment:
Q  17 tattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactactt 116  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||  | |||| |  |  |||||| | |||| |||||||||||  | |||||||||    
T  16119822 tattgttgaaaaagtgaagttgaattcttttttatggccttcgtcaaatgttgtttctcttccgtttgattttcacgattggtggagatatccactactt 16119921  T
Q  117 tgtat 121  Q
    |||||    
T  16119922 tgtat 16119926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 39565377 - 39565450
Alignment:
Q  219 gattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||| |||||||||||| | ||||||| |||||||||| ||||| ||||||| |||||||||||||| |||||||    
T  39565377 gattcatcacttttagcaaatcttgtgc-gggtgaatcaattttcatttgagc-atatattccattttaatttgtt 39565450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 13390619 - 13390573
Alignment:
Q  17 tattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaa 63  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||    
T  13390619 tattgtagaaaaggtgaagttgaattcttttttatagctttcgtcaa 13390573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 9194620 - 9194543
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| || || ||||||| ||||||||||| ||||||||| | | ||  ||||||||||| ||||||||||||||    
T  9194620 gtgattcatcgctcttagcacgccttgtgcgggatgaatcactctcctttaaagcaatatatttcattttgatttgtt 9194543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 20251771 - 20251668
Alignment:
Q  18 attgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactacttt 117  Q
    ||||||||| | |||||| ||||||||||||||||||||| |||||  | |||| | ||  |||||| | |||| |||||||||||| | ||| | ||||    
T  20251771 attgttgaacaagtgaagatgaactcttttttatggcttttgtcaaatgttgtttctttttcgtttggttttcacgattggtggaggtatccattgcttt 20251672  T
Q  118 gtat 121  Q
    ||||    
T  20251671 gtat 20251668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 16120021 - 16120085
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||||||| |||   ||  ||||| |||||||  ||||||||||||||    
T  16120021 tttagcacaccttgtgcggggtgaaacaccactctattgagtaatatatctcattttgatttgtt 16120085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 44546426 - 44546705
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  44546426 aatattgtcgaaaaggtgaagctgaattcttttttatggctttcgtcaaacggtgtaccattggcgtttgctcttcatgattggtggaggcacccacttc 44546525  T
Q  115 tttgtataggtgttgtctaggtgttaacannnnnnnnnnnnnnnnnnnaattggtgtgacatgtttctgtgtcactcatctagtttttgtaacagacttt 214  Q
    |||||||||||| || ||| ||||||| |                   |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44546526 tttgtataggtgctggctaagtgttaaaattttttcttttttctttttaattggtgtgacatgtttctgtgtcactcacctagtttttgtaacagacttt 44546625  T
Q  215 gagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44546626 gagtgattcgtcgcttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 44546705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 1463318 - 1463412
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |||||||||||| ||| |||||||||||||||    
T  1463318 tttgtaacagactttgagtgattcatcacttttagcacaccttatgcggggtgaatgactttgcctttgagcaatttataccattttgatttgtt 1463412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 17186235 - 17186347
Alignment:
Q  182 tgtgtcactcatctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattcc 281  Q
    ||||||| ||| || | ||||||| ||||||||||||||||| ||  |||||||| |||||||||||| ||||||||| ||| |||||||||||||||||    
T  17186235 tgtgtcagtcaccttgattttgtatcagactttgagtgattcatcgtttttagcataccttgtgcgggatgaatcactcttcttttgagcaatatattcc 17186334  T
Q  282 attttgatttgtt 294  Q
    |||||||||||||    
T  17186335 attttgatttgtt 17186347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 13159776 - 13159699
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13159776 gtgattcaccacttttagcacactttgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttgtt 13159699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 46191288 - 46191195
Alignment:
Q  201 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||  || ||||| || ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46191288 ttgtaacagatattcagtgagtcatcatttttagcacacattgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttgtt 46191195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 39868303 - 39868402
Alignment:
Q  194 ctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgt 293  Q
    ||||||| |||||||||| ||||||||||| ||  ||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||    
T  39868303 ctagtttctgtaacagacgttgagtgattcatcg-ttttagcacaccttgtgcggggtgagtcactcttcttttcagcaatatattccattttgatttgt 39868401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 22322507 - 22322413
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||| ||||||||||||||| ||| |||||||||||||| |||||| ||||||||||| | ||||| |||| |||||||||||||||||||    
T  22322507 tttgtaaccgactttgagtgattcatcatttttagcacaccttatgcgggatgaatcactttgcttttgaacaatttattccattttgatttgtt 22322413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 24010487 - 24010575
Alignment:
Q  206 acagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||  || |||||||||  ||||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||    
T  24010487 acagactttgagtgatttatcgcttttagcatgccttgtgcggggtgaatcactcttcatttgaacaatatattcaattttgatttgtt 24010575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 135895 - 135821
Alignment:
Q  219 gattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||| ||||| |||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  135895 gattcatcactcttagcacaccttgtacggggtgaatcacttt-cgtttgagcaatatattccattttgatttgtt 135821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 42396790 - 42396697
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| ||| ||| ||| ||||||| |||| |||||||||||||| |||||| |||| |||||||||||||||||||||| |||||||    
T  42396790 tttgtaacagacattgggtgtttcatcacttt-agcataccttgtgcggggtaaatcacctttcttttgagcaatatattccattttaatttgtt 42396697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 294
Target Start/End: Complemental strand, 37014007 - 37013918
Alignment:
Q  205 aacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||| || ||||||||| ||||| || |||||||| || | | | ||||||||||||||||||||||||||||||    
T  37014007 aacagactttgagtgattcatcgcttttagcataccttatgtggggtgaaccattctccttttgagcaatatattccattttgatttgtt 37013918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 11821460 - 11821571
Alignment:
Q  180 tctgtgtcactcatctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgc-ggggtgaatcacttttcctttgagcaatatat 278  Q
    |||||||||  ||||||| ||| ||||||||||||||||  ||| || ||||||||||||||||||| ||||||||||||| |||  ||||||||| |||    
T  11821460 tctgtgtcaggcatctagctttcgtaacagactttgagtatttcatcgcttttagcacaccttgtgcgggggtgaatcactcttctattgagcaatgtat 11821559  T
Q  279 tccattttgatt 290  Q
    |  |||||||||    
T  11821560 tttattttgatt 11821571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 26893330 - 26893423
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| |||  ||| ||||||| ||||||| |||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||    
T  26893330 tttgtaatagatgttgggtgattcatcacttt-agcacaccttgtgcagggtgaattacctttcttttgagcaatacattccattttgatttgtt 26893423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 18430525 - 18430433
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgt 293  Q
    ||||||| |||||||| ||||||| ||||||||| |||| |||||||||| |||||||| || |  ||||||||||||||| ||||||||||||    
T  18430525 tttgtaatagactttgggtgattcatcacttttaacacatcttgtgcggg-tgaatcaccttgctcttgagcaatatattcaattttgatttgt 18430433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 20177455 - 20177379
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgt 293  Q
    ||||||| ||||||||| || | |||||||| |||||||||||||||  ||||||||||||||| ||||||||||||    
T  20177455 gtgattcatcacttttaacatatcttgtgcgaggtgaatcacttttcgattgagcaatatattcgattttgatttgt 20177379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 14454011 - 14453918
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||  ||| |   |||||||| ||||||||||||| |||||| |||| |||| |||||||||||||| |||||||||||||||    
T  14454011 tttgtaacagactttaggtgttctttcactttt-gcacaccttgtgcagggtgattcacctttcttttgagcaatatatcccattttgatttgtt 14453918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 55284935 - 55284841
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||| ||| | || |||  ||||||||||||||||| |||||||||||||||| ||  ||| |||||||||||  |||||||||||||    
T  55284935 tttgtaacagatttttaatgtttcaccacttttagcacaccttatgcggggtgaatcactattattttcagcaatatattttattttgatttgtt 55284841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 17186083 - 17186192
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||| | || | |||||||||||||| |||||||    |||  | ||||| |||| | ||||||||||||||||||||||||| |    
T  17186083 aatattgtcgaaaaggtgaggctggattcttttttatggctctcgtcaaattctgtagctttggcatttggttttcatgattggtggaggcacccacttc 17186182  T
Q  115 tttgtatagg 124  Q
    ||||||||||    
T  17186183 tttgtatagg 17186192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 17712737 - 17712673
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||||||||||||||| |   | |||| |||||||||||||||||||||||    
T  17712737 tttagcacaccttgtgcggggtgaatcactctgtttctgagtaatatattccattttgatttgtt 17712673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 41007223 - 41007311
Alignment:
Q  206 acagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||  || ||||||||||  ||| || ||| ||||||||||||| | |||| |||||||| ||||||||||||||    
T  41007223 acagactttgagtgattgatcgcttttagcacgtcttatgtgggatgaatcacttttcatctgagtaatatatttcattttgatttgtt 41007311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 23001923 - 23002026
Alignment:
Q  18 attgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactacttt 117  Q
    ||||||||||| |||||| |||||||||| |||||||||  |||||  | |||| | ||  |||||| | ||||||||||||||||| | ||||||||||    
T  23001923 attgttgaaaaagtgaagctgaactctttcttatggcttcggtcaaatgttgtttcttttccgtttggttttcatgattggtggaggtatccactacttt 23002022  T
Q  118 gtat 121  Q
    ||||    
T  23002023 gtat 23002026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 36825872 - 36825778
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcac-ttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||| ||||| |||| ||||||| ||||||| | |||||||| | ||||||||||||| ||||| |  |||||||||||||||||||||||||||    
T  36825872 tttgtcacagattttgggtgattcatcactttaa-cacaccttatacggggtgaatcaccttttcgtgcgagcaatatattccattttgatttgtt 36825778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 16736246 - 16736169
Alignment:
Q  218 tgattcgtcacttttagcacaccttgtgcggggtgaatca-cttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||| |||||||||||||| ||| || |||||||||||  ||||| ||||||||||||| | ||||||||||||||    
T  16736246 tgattcatcacttttagcacatcttatgtggggtgaatcattttttcgtttgagcaatataattcattttgatttgtt 16736169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 21141925 - 21142002
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||  |||||||| ||  |||||||||||||||||||||  |  |||||||||||||||| |||||||||||||    
T  21141925 gtgattcaccacttttaacatgccttgtgcggggtgaatcactcctggtttgagcaatatattctattttgatttgtt 21142002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 52762930 - 52763006
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| ||||||| | |||||||||| || ||||||||||| | | |||||||||||||||||||||| |||||||    
T  52762930 gtgattcatcactttaa-cacaccttgtacgaggtgaatcactatacttttgagcaatatattccattttaatttgtt 52763006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 11821311 - 11821423
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactctttttt-atggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccacta 113  Q
    |||||||| |||||||||||| |||| |||||||| |||||| |||||||    ||| ||| | ||||||| | |||||||||||| |||| || ||||     
T  11821311 aatattgtcgaaaaggtgaagctgaattctttttttatggctctcgtcaaattttgtaccaattgcgtttggttttcatgattggtagaggtacgcactt 11821410  T
Q  114 ctttgtataggtg 126  Q
    |||||||||||||    
T  11821411 ctttgtataggtg 11821423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 28709179 - 28709242
Alignment:
Q  231 ttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||| |||||||||||||||||| |  || |||||| |||||||| ||||||||||||||    
T  28709179 ttagcacatcttgtgcggggtgaatcattcctcttttgagtaatatatttcattttgatttgtt 28709242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 28740815 - 28740909
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||  ||  |||| || |||||||| ||||| ||||||| ||||||||||| |||  |||   ||||||||||||||||||||||||    
T  28740815 tttgtaacagatattatgtgaatcatcacttttggcacatcttgtgctgggtgaatcaccttttatttagacaatatattccattttgatttgtt 28740909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 39868137 - 39868246
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||||| || | |||||||||||||| |||||||    |||  |  |||  |||| | ||||||||||||||||| ||||||| |    
T  39868137 aatattgtcgaaaaggtgaagctggattcttttttatggctctcgtcaaattctgtaactatggtttttggttttcatgattggtggaggtacccacttc 39868236  T
Q  115 tttgtatagg 124  Q
    ||||||||||    
T  39868237 tttgtatagg 39868246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 28708969 - 28709072
Alignment:
Q  17 tattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactactt 116  Q
    |||||| |||||||||||| |||| |||||||||||||| |||||||  | ||||||  |  ||||||   ||||||||||||||||  ||||| |||||    
T  28708969 tattgtagaaaaggtgaaggtgaattcttttttatggctgtcgtcaaatgttgttcctctttcgtttggctttcatgattggtggagataccca-tactt 28709067  T
Q  117 tgtat 121  Q
    |||||    
T  28709068 tgtat 28709072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 30036633 - 30036697
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||| ||| ||||||||   |  || ||||||||||||||||||||||||||||||    
T  30036633 tttagcacaccttatgcagggtgaattgttcctcatttgagcaatatattccattttgatttgtt 30036697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 48782572 - 48782508
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||| |||||||||| ||||||||||| |||   |||||||||| |||| ||||||||||||||    
T  48782572 tttagtacaccttgtgtggggtgaatcaatttcggtttgagcaatttatttcattttgatttgtt 48782508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 28068033 - 28068136
Alignment:
Q  18 attgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactacttt 117  Q
    ||||||||||| |||||| ||||||||||||||||||||  ||| |  | |||| | |   |||||| | || |||||||||||||| | ||||||||||    
T  28068033 attgttgaaaaagtgaagctgaactcttttttatggcttcggtctaatgttgtttcttgttcgtttggttttaatgattggtggaggtatccactacttt 28068132  T
Q  118 gtat 121  Q
    ||||    
T  28068133 gtat 28068136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 7272683 - 7272753
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttg 287  Q
    |||||||  |||| |||||||||||| | |||||||||||||| ||  |||||| ||||||||| ||||||    
T  7272683 gtgattcaccactgttagcacaccttatacggggtgaatcactattaatttgagtaatatattctattttg 7272753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 13159965 - 13159863
Alignment:
Q  17 tattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactactt 116  Q
    |||| ||||||||||||||| | | || ||||||||||| || || | | || |||| || ||||||| | |||||||||||||||| || ||| |||||    
T  13159965 tattcttgaaaaggtgaagtgggattcatttttatggctatcttcgaaccgtattccgttagcgtttgattttcatgattggtggagacatccattactt 13159866  T
Q  117 tgt 119  Q
    |||    
T  13159865 tgt 13159863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 13317705 - 13317640
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||| ||||||||||| ||||||||||||| |    ||||| ||||||||||||||| |||||||    
T  13317705 ttttaacacaccttgtgtggggtgaatcactctgttcttgagtaatatattccattttaatttgtt 13317640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 39683114 - 39683143
Alignment:
Q  265 tttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||||||||||||    
T  39683114 tttgagcaatatattccattttgatttgtt 39683143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 2632819 - 2632751
Alignment:
Q  226 cacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||| |||||||| ||||| |||| |||||||| | |  |||||||||||||| | |||||||||||||    
T  2632819 cactattagcacatcttgtacgggatgaatcacatcttgtttgagcaatatatcctattttgatttgtt 2632751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 53084666 - 53084602
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| ||||||| || | | |||||| |||| |||||||| ||||||||||||| |||||||    
T  53084666 tttagcataccttgtacgagataaatcacctttcttttgagcattatattccattttaatttgtt 53084602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 17936141 - 17936419
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||| |||||||| ||||| |    
T  17936141 aatattgttgaaaaggtgaagctgaactcttttttatggctttcgtcaaacggtgtaccattgccgtttgctcttcatgattgatggaggcatccacttc 17936240  T
Q  115 tttgtataggtgttgtctaggtgttaacannnnnnnnnnnnnnnnnnnaattggtgtgacatgtttctgtgtcactcatctagtttttgtaacagacttt 214  Q
    |||||||||||| ||  | |||||||| |                   |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17936241 tttgtataggtgctggttgggtgttaa-attttttcttttttctttttaattggtgtgacatgtttctgtgtcactcacctagtttttgtaacagacttt 17936339  T
Q  215 gagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17936340 gagtgattcgtcgcttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatatttcattttgatttgtt 17936419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 29934709 - 29934772
Alignment:
Q  231 ttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||    
T  29934709 ttagcacaccttgtgcggggtgaatcacctctcttttgagcaatatattccattttgatttgtt 29934772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 15172815 - 15172892
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| ||||||||||||||  |||| |||||||||||||| ||| |||||| ||||||||||||||| |||||||    
T  15172815 gtgattcatcacttttagcacatattgttcggggtgaatcactcttcgtttgagaaatatattccattttaatttgtt 15172892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 39143314 - 39143390
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||| | |||||||||||||| | || ||||||||||    
T  39143314 gtgattcatcacttt-accacaccttgtgcggggtgaatcactttgcttttgagcaatatatcctatattgatttgtt 39143390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 29934503 - 29934549
Alignment:
Q  17 tattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaa 63  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  29934503 tattgtagaaaaggtgaagttgaattcttttttatggctttcgtcaa 29934549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 39919390 - 39919297
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| ||| ||||||| ||| |||||||||||||||||| |||||||| || |||    |||| ||||||||||||||||| |||||    
T  39919390 tttgtaacagacattgggtgattcatca-ttttagcacaccttgtgcagggtgaattacctttttggtgagtaatatattccattttgacttgtt 39919297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 15353167 - 15353271
Alignment:
Q  17 tattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactactt 116  Q
    |||||||||||   |||||||||||||||||||||||||||| || |  | | |||| ||  |||||| | ||||||||||||||||  ||||||| |||    
T  15353167 tattgttgaaagattgaagttgaactcttttttatggctttcttcgaatgttattcctttatcgtttggttttcatgattggtggagatacccacttctt 15353266  T
Q  117 tgtat 121  Q
    |||||    
T  15353267 tgtat 15353271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 21313805 - 21313872
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatca--cttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||| ||||||||||||  || ||  |||||| |||||||||||||||||||||||    
T  21313805 ttttagcacaccttgtacggggtgaatcattctgtttttttgagtaatatattccattttgatttgtt 21313872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 1219198 - 1219261
Alignment:
Q  231 ttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||| |||||||||||||||||| || |  |||||| |||||||| ||||||||||||||    
T  1219198 ttagcacatcttgtgcggggtgaatcaattctattttgagtaatatatttcattttgatttgtt 1219261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 19712716 - 19712809
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||| |||||||||  |||||| |||| || |||||| ||||||||||||||| || |  |  |||||| |||||||||||||||||||||||    
T  19712716 tttgtatcagactttggatgattcatcacgtt-agcacatcttgtgcggggtgaaccattccttttttgagtaatatattccattttgatttgtt 19712809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 15353349 - 15353425
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| |||||||| | |||||||||||||| |||||||||   | ||||||| ||||||| ||||||||||||||    
T  15353349 gtgattcatcacttttggtacaccttgtgcgggatgaatcactccgcttttgagc-atatatttcattttgatttgtt 15353425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 20877308 - 20877239
Alignment:
Q  225 tcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||||||||||||||| ||| |  | ||||||| ||||| | ||||| ||||||||    
T  20877308 tcacttttagcacaccttgtgcggggtgaaacacatcgcttttgagctatataattcatttagatttgtt 20877239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 8053461 - 8053537
Alignment:
Q  218 tgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||| |||||||||  ||||||||| ||||||||||||  || |||||||  ||| |||||| ||||||||||||    
T  8053461 tgattcatcacttttaatacaccttgtacggggtgaatcatcttacctttgaataatttattcctttttgatttgtt 8053537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 9018101 - 9018144
Alignment:
Q  251 tgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||| | |||||||||||||||||||||| |||||||    
T  9018101 tgaatcactttgcttttgagcaatatattccattttaatttgtt 9018144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 7567216 - 7566944
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||| |||||||| |    
T  7567216 aatattgtcgaaaaggtgaagctgaattcttttttatggctttcgtcaaatggtgtaccattggcgtttcctcttcatgattggtggagacacccacttc 7567117  T
Q  115 tttgtataggtgttgtctaggtgttaacannnnnnnnnnnnnnnnnnnaattggtgtgacatgtttctgtgtcactcatctagtttttgtaacagacttt 214  Q
    |||||||||||| || ||| ||||||| |                   ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  7567116 tttgtataggtgctggctaagtgttaaaaaaatttcttttt-------aattggtgtgacatgtttcggtgtcactcacctagtttttgtaacagacttt 7567024  T
Q  215 gagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7567023 gagtgatttgtcgcttttagcacaccttatgcggggtgaatcatttttcctttgagcaatatattccattttgatttgtt 7566944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 22681553 - 22681441
Alignment:
Q  182 tgtgtcactcatctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattcc 281  Q
    ||||||| ||| |||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  22681553 tgtgtcagtcacctagtttttgtatcagactttgagtgattcatcgtttttagcacaccttgtgcggggtgaatcactcttcttttgagcaatatattcc 22681454  T
Q  282 attttgatttgtt 294  Q
    |||||||||||||    
T  22681453 attttgatttgtt 22681441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 6459060 - 6459171
Alignment:
Q  182 tgtgtcactcatctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattcc 281  Q
    ||||||| ||| ||||||| |||| ||||| ||||||||||| || |||||||||||| |||||| |||||||||||||||| ||||||||||||||| |    
T  6459060 tgtgtcagtcacctagtttctgtatcagacattgagtgattcatcgcttttagcacac-ttgtgcagggtgaatcacttttcttttgagcaatatatttc 6459158  T
Q  282 attttgatttgtt 294  Q
    |||||||||||||    
T  6459159 attttgatttgtt 6459171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 41242241 - 41242163
Alignment:
Q  216 agtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  41242241 agtgattcatcaattttagcacaccttgtgcggggtgaatcacttttcgtttgagtaatatattccattttgatttgtt 41242163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 14241280 - 14241371
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgattt 291  Q
    |||||||||||  ||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  14241280 tttgtaacagatattgtgtgattcatcacttttagcacatcttgtgcggggtgaatcacttttcgttttagcaatatatttcattttgattt 14241371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 201 - 294
Target Start/End: Original strand, 42453622 - 42453715
Alignment:
Q  201 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||  |||  |||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  42453622 ttgtaacagatattgtatgattcatcacttttagcacaccttatgcggggtgaatcactgttcgtttgagcaatatattccatttttatttgtt 42453715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 290
Target Start/End: Complemental strand, 13428042 - 13427953
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatt 290  Q
    |||||||||||| ||| ||||||| ||||||| | ||||||||||| |||||||||||| |||| ||||||||||||||| ||||||||||    
T  13428042 tttgtaacagacgttgggtgattcatcactttaa-cacaccttgtgtggggtgaatcacctttcttttgagcaatatatttcattttgatt 13427953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 38889909 - 38890002
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| ||| ||| ||| ||||||| || ||||||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||    
T  38889909 tttgtaacagacgttgggtgtttcatcacttt-agtacaccttgtgcggggtgaatcacctttcttttgagcaatatattctattttaatttgtt 38890002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 6458908 - 6459016
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||||||| || |||||||||||||||||||||     |||  |  ||||||||| | ||||||||||||||||||||||||| |    
T  6458908 aatattgtcgaaaaggtgaagttaaattcttttttatggctttcgtcatattttgtaacgatggcgtttggttttcatgattggtggaggcacccacttc 6459007  T
Q  115 tttgtatag 123  Q
    |||||||||    
T  6459008 tttgtatag 6459016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 17263376 - 17263465
Alignment:
Q  201 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgattt 291  Q
    ||||||||||  ||| ||||||| || ||||||||||||||||| | ||||||||||||||| | |||| |||||||||||||||||||||    
T  17263376 ttgtaacagatattgggtgattcatctcttttagcacaccttgtacagggtgaatcactttt-cgttgaacaatatattccattttgattt 17263465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 45140226 - 45140133
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| ||| ||| ||  ||||||| |||||||||||||||||||||||||| |||| ||||| |||||||| ||||||| |||||||    
T  45140226 tttgtaacagacgttgggtgttttctcacttt-agcacaccttgtgcggggtgaatcacctttcttttgaacaatatatcccattttaatttgtt 45140133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 21120598 - 21120662
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||||| ||||||||  | | ||||||||||||||||||||||||||||||    
T  21120598 tttagcacaccttgtgcgggatgaatcacactgcttttgagcaatatattccattttgatttgtt 21120662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 32215644 - 32215580
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||||||||||||||| |   |||||| |||||||||||||||||||||||    
T  32215644 tttagcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgatttgtt 32215580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 8752496 - 8752565
Alignment:
Q  225 tcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||||||||||||||| |||||  | ||||||| ||||| | ||||||||||||||    
T  8752496 tcacttttagcacaccttgtgcggggtgaaacacttcgcttttgagctatataattcattttgatttgtt 8752565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 22358787 - 22358695
Alignment:
Q  201 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| ||| ||| ||||||| |  ||||||||||||||| |||||||||||||||||| | ||||||| || || ||||||||||||||||    
T  22358787 ttgtaactgacattgggtgattcattgcttttagcacaccttatgcggggtgaatcactttgcttttgagc-atttaatccattttgatttgtt 22358695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 22681712 - 22681603
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||||| || | |||||||||||||| |||||||     ||  | ||||| |||| | ||||||||||||||||||||||||| |    
T  22681712 aatattgtcgaaaaggtgaagctggattcttttttatggctctcgtcaaattcggtatctttggcttttggttttcatgattggtggaggcacccacttc 22681613  T
Q  115 tttgtatagg 124  Q
    ||||||||||    
T  22681612 tttgtatagg 22681603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 38651280 - 38651368
Alignment:
Q  202 tgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgattt 291  Q
    |||||||||| ||  ||||||| ||||||| |||| ||||| |||||||||||||||| | | ||||| |||||||||||||||||||||    
T  38651280 tgtaacagacattaggtgattcatcacttt-agcataccttatgcggggtgaatcactatgcttttgaacaatatattccattttgattt 38651368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 3091985 - 3092061
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| ||||||| || ||||||| ||| |||||||||||||| | |||||||||||||| | |||||||||||||    
T  3091985 gtgattcatcacttt-agtacaccttatgcagggtgaatcactttgcttttgagcaatatatcctattttgatttgtt 3092061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 20398878 - 20398942
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||  |||| |||||||||||||| | | ||||||||||||||| ||||||||||||||    
T  20398878 tttagcacattttgtacggggtgaatcactctgcttttgagcaatatatttcattttgatttgtt 20398942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 43656138 - 43656201
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||||| |||||||| || | |||||| ||||||||||||||| |||||||    
T  43656138 tttagcacaccttgtgcgggatgaatcac-ttacttttgagtaatatattccattttaatttgtt 43656201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 39321956 - 39321910
Alignment:
Q  248 gggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||| |||| |||| |||||||||||||| |||||||||||||||    
T  39321956 gggtgattcacctttcttttgagcaatatatcccattttgatttgtt 39321910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 644833 - 644874
Alignment:
Q  17 tattgttgaaaaggtgaagttgaactcttttttatggctttc 58  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  644833 tattgttgaaagagtgaagctgaactcttttttatggctttc 644874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 22358949 - 22358908
Alignment:
Q  17 tattgttgaaaaggtgaagttgaactcttttttatggctttc 58  Q
    |||||||||||| |||||| ||||||| ||||||||||||||    
T  22358949 tattgttgaaaaagtgaagctgaactcctttttatggctttc 22358908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 294
Target Start/End: Complemental strand, 25145646 - 25145617
Alignment:
Q  265 tttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||||||||||||    
T  25145646 tttgagcaatatattccattttgatttgtt 25145617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 29802784 - 29802852
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccatttt 286  Q
    |||||||  ||||||||| |||| ||||||||||| ||||||||||  |||||| ||||||||| |||||    
T  29802784 gtgattcaccacttttagtacac-ttgtgcggggtaaatcacttttggtttgagtaatatattcaatttt 29802852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 45701300 - 45701188
Alignment:
Q  182 tgtgtcactcatctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattcc 281  Q
    ||||||| ||| ||||||  |||||||||| ||||||||||| || ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  45701300 tgtgtcagtcacctagttactgtaacagacattgagtgattcatcgcttttagcacaccttgtgctgggtgaatcacttttcttttaagcaatatattcc 45701201  T
Q  282 attttgatttgtt 294  Q
    |||||||||||||    
T  45701200 attttgatttgtt 45701188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 3376112 - 3376211
Alignment:
Q  194 ctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgt 293  Q
    ||||||| |||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||    
T  3376112 ctagtttctgtaacagactttgagtgattcatcg-ttttagcacaccttgtgcggggtgaatcactcttcttttgagtaatatattctattttgatttgt 3376210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 45468415 - 45468304
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||    ||| ||| ||||||||| | ||||||||||||||||||||||||| |    
T  45468415 aatattgtcgaaaaggtgaagctgaattcttttttatggctttcgtcaaattttgtaccaatggcgtttggttttcatgattggtggaggcacccacttc 45468316  T
Q  115 tttgtataggtg 126  Q
    ||||||||||||    
T  45468315 tttgtataggtg 45468304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 45701452 - 45701340
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||    ||| ||| ||||||||| | |||||||||||||| |||||||||| |    
T  45701452 aatattgtcgaaaaggtgaagctgaattcttttttatggctttcgtcaaattttgtaccaatggcgtttggttttcatgattggtgggggcacccacttc 45701353  T
Q  115 tttgtataggtgt 127  Q
    |||||||||||||    
T  45701352 tttgtataggtgt 45701340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 45468263 - 45468150
Alignment:
Q  182 tgtgtcactcatctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttg-tgcggggtgaatcacttttcctttgagcaatatattc 280  Q
    ||||||| ||| ||||||  ||||| |||| ||||||||||| || |||||||||||||||  ||||| |||||||||||||| ||||| ||||||||||    
T  45468263 tgtgtcagtcacctagttactgtaaaagacattgagtgattcatcgcttttagcacacctttatgcggagtgaatcacttttcttttgaacaatatattc 45468164  T
Q  281 cattttgatttgtt 294  Q
    ||||||||||||||    
T  45468163 cattttgatttgtt 45468150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 199 - 294
Target Start/End: Original strand, 1206418 - 1206513
Alignment:
Q  199 ttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| |||| ||||||||||||  |||||||||||| |||||||||||||||||||  || | ||||||||||||||| ||||||||||||||    
T  1206418 ttttgtatcagattttgagtgattcaccacttttagcacgccttgtgcggggtgaatcatcttccatttgagcaatatatttcattttgatttgtt 1206513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 12915741 - 12915835
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||| |||| |||| ||||||| ||| ||||| ||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||    
T  12915741 tttgtatcagattttgcgtgattcatcagttttaacacaccttgtgtggggtgaatcacttctcgtttgagcaatatatttcattttgatttgtt 12915835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 201 - 294
Target Start/End: Original strand, 17607636 - 17607729
Alignment:
Q  201 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||  ||| ||||||| ||||||||| ||||||||||||| ||||||||||| | | |||||||||||||||||||||| |||||||    
T  17607636 ttgtaacagatattgtgtgattcatcacttttaacacaccttgtgcgaggtgaatcactgtccgtttgagcaatatattccatttttatttgtt 17607729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 28543754 - 28543851
Alignment:
Q  197 gtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||| ||||||||||||  |||||||||||| ||||||  || ||||||||||||   |||||||||||||||||||||| |||||||    
T  28543754 gtttttgtaacagattttgagtgattcaccacttttagcacgccttgtatggagtgaatcactttcggtttgagcaatatattccattttaatttgtt 28543851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 2220174 - 2220097
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| |||||||||||||| |||||  | ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  2220174 gtgattcatcacttttagcacatcttgtatgaggtgaatcacttttcgtttgagcaatataatccattttgatttgtt 2220097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 28210073 - 28209993
Alignment:
Q  214 tgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| || ||||||||||||||||||||||||||||| ||||||||  ||   |||||||||||||||||||||||||    
T  28210073 tgagtgagtcatcacttttagcacaccttgtgcggggtgattcacttttggttgttgcaatatattccattttgatttgtt 28209993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 42184102 - 42184170
Alignment:
Q  226 cacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||| |||||||||||||||||||| ||  |||||| ||||||||||||| |||||||||    
T  42184102 cacttttagcacatcttgtgcggggtgaatcactgttggtttgagtaatatattccattatgatttgtt 42184170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 30515858 - 30515782
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| |||||||||| ||||||||||||||||||||||||   | ||||||| ||||||| ||||||||||||||    
T  30515858 gtgattcatcacttttagtacaccttgtgcggggtgaatcactccgcttttgagc-atatattacattttgatttgtt 30515782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 39994684 - 39994749
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||| |||||||||||||| |   |||||| |||||||||||||||||||||||    
T  39994684 ttttagcacaccttgtacggggtgaatcactatatttttgagtaatatattccattttgatttgtt 39994749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 10005260 - 10005324
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||||||||||| ||| | ||||||| ||||||||| ||| ||||||||||    
T  10005260 tttagcacaccttgtgcggggtgaataactctgcctttgaacaatatatttcatattgatttgtt 10005324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 26405009 - 26405077
Alignment:
Q  226 cacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||  ||| ||||| | ||||||||||| |||||| |||||||||||||||||||||||    
T  26405009 cacttttagcacattttgggcgggataaatcacttttcgtttgagaaatatattccattttgatttgtt 26405077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 26438361 - 26438422
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgattt 291  Q
    ||||||||||||||||| ||||||||||| |||| ||||| |||||||||||| ||| ||||    
T  26438361 tttagcacaccttgtgcagggtgaatcacctttcttttgaacaatatattccaatttaattt 26438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 28157716 - 28157780
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| ||||||||| |||| |||||| |||| ||| |||||||||||||||||| |||||||    
T  28157716 tttagcaaaccttgtgcagggtaaatcacctttcttttaagcaatatattccattttaatttgtt 28157780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 11123651 - 11123705
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaat 255  Q
    |||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||    
T  11123651 tttgtaacagacgttgggtgattcatca-ttttagcacaccttgtgcggggtgaat 11123705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 3375946 - 3376064
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||||| || | |||||||||||||| |||||||    |||  |  |||  |||| | ||||||||||||||||||||| ||| |    
T  3375946 aatattgtcgaaaaggtgaagctggattcttttttatggctctcgtcaaattctgtaactatggtatttggttttcatgattggtggaggcaccaacttc 3376045  T
Q  115 tttgtataggtgttgtcta 133  Q
    |||||||||| | ||||||    
T  3376046 tttgtataggggctgtcta 3376064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 32603304 - 32603392
Alignment:
Q  201 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatt 290  Q
    ||||||||||| ||| ||||||| |||||||||| ||| ||| |  |||||||||||| ||  ||||||| |||||||| ||||||||||    
T  32603304 ttgtaacagacattgggtgattcatcacttttagtacatcttatatggggtgaatcac-ttagctttgagaaatatatttcattttgatt 32603392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 33006765 - 33006689
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| ||||||| || ||||||||| || ||||||||||||| | |||||| ||||||||  |||||||||||||    
T  33006765 gtgattcatcacttt-aggacaccttgtacgaggtgaatcactttacttttgagtaatatattttattttgatttgtt 33006689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 41647215 - 41647138
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||  |||||| ||||||||||||||  |||||||||||||   |||||| |||||||| |||||| |||||||    
T  41647215 gtgattcaccactttcagcacaccttgtgcaaggtgaatcactttcggtttgagtaatatattgcattttaatttgtt 41647138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 18556128 - 18556064
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||| |||||||||||||||   ||| || |||||||||||||||||||| | |||||||    
T  18556128 tttagcacatcttgtgcggggtgaaattcttctcttttgagcaatatattccattctaatttgtt 18556064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 294
Target Start/End: Complemental strand, 22653906 - 22653877
Alignment:
Q  265 tttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||||||||||||    
T  22653906 tttgagcaatatattccattttgatttgtt 22653877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 30516040 - 30515999
Alignment:
Q  17 tattgttgaaaaggtgaagttgaactcttttttatggctttc 58  Q
    ||||| |||||  |||||||||||||||||||||||||||||    
T  30516040 tattgatgaaagagtgaagttgaactcttttttatggctttc 30515999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 20819715 - 20819603
Alignment:
Q  182 tgtgtcactcatctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattcc 281  Q
    ||||||| |||  |||||| |||| ||||||||||||||||| ||  |||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  20819715 tgtgtcagtcacttagtttctgtatcagactttgagtgattcatcgtttttagcacaccttgtgctgggtgaatcacttttcttttgagcaatatattcc 20819616  T
Q  282 attttgatttgtt 294  Q
    |||||||||||||    
T  20819615 attttgatttgtt 20819603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 24509416 - 24509317
Alignment:
Q  194 ctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgt 293  Q
    |||||||||||| ||||||||||||||||| ||  |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||    
T  24509416 ctagtttttgtatcagactttgagtgattcatcgtttttagcacaccttgtgc-gggtgaatcactcttcttttgagcaatatattccattttgatttgt 24509318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 10349520 - 10349614
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||  ||  ||||||| |||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||    
T  10349520 tttgtaacagatattttgtgattcatcacttttagcacaccttgtgcagggtgaatcactttcagtttgagcaatatattccattttgatttgtt 10349614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 20819870 - 20819752
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    |||  || ||||||||| | |||||||||||||| |||||||||| |    
T  20819870 aatattgtcgaaaaggtgaagttgaattcttttttatggctttcgtcaaattctgtaacaatggcgtttggttttcatgattggtggtggcacccacttc 20819771  T
Q  115 tttgtataggtgttgtcta 133  Q
    |||||||||| | ||||||    
T  20819770 tttgtataggggctgtcta 20819752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 7637731 - 7637638
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| ||| ||| ||  ||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||    
T  7637731 tttgtaacagacgttgggtgttttctcacttt-agcacaccttgtgcggggtgaatcacctttcttttgagcaatatatcccattttgatttgtt 7637638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 24509581 - 24509472
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||||||| || | |||||||||||||| |||||||    |||  | ||||| |||| | ||||||||||||||||||||||||| |    
T  24509581 aatattgtcgaaaaggtgaagatggattcttttttatggctctcgtcaaattctgtaactttggcatttggttttcatgattggtggaggcacccacttc 24509482  T
Q  115 tttgtatagg 124  Q
    ||||||||||    
T  24509481 tttgtatagg 24509472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 39581430 - 39581499
Alignment:
Q  225 tcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| | |||||||||||||||||||| ||| ||||| |||||||| | |||||||||||||    
T  39581430 tcacttttagcatatcttgtgcggggtgaatcactattcgtttgaacaatatatcctattttgatttgtt 39581499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 1870497 - 1870560
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttg 292  Q
    ||||||||||| ||||||| |||||||| ||| |||||||||||||||||| ||| ||||||||    
T  1870497 ttttagcacacgttgtgcgtggtgaatctcttctcctttgagcaatatatttcatcttgatttg 1870560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 44955685 - 44955778
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||   || ||  |||||||| ||||||||||||| |||||| |||| |||  |||||||||||||| |||||||||||||||    
T  44955685 tttgtaacagactttagatgttttttcactttt-gcacaccttgtgcagggtgattcaccttttttttgagcaatatatcccattttgatttgtt 44955778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 16632667 - 16632732
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||||||||||||   |  |||||| |||||| |||||||||||||||||||    
T  16632667 ttttagcacaccttgtgcggggtgaatttatcctcctttaagcaatttattccattttgatttgtt 16632732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 16423254 - 16423196
Alignment:
Q  236 acaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||| ||||   |||||||||||||| | |||||||||||||    
T  16423254 acaccttgtgcggggtgaatcgctttgattttgagcaatatatcctattttgatttgtt 16423196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 33567247 - 33567153
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| ||| ||||| |||| | ||||||||| |||||||| |  ||||||||| ||||||| |||||   ||||||||| ||||||||||||    
T  33567247 tttgtaatagattttgaatgatccatcacttttaacacaccttatatggggtgaattacttttcgtttgaatgatatattccgttttgatttgtt 33567153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 12526982 - 12526941
Alignment:
Q  253 aatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||| ||||||||||||||| ||||||||||||||    
T  12526982 aatcacttttcatttgagcaatatatttcattttgatttgtt 12526941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 34505246 - 34505311
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||| ||||||||||||   | || ||||||||||| |||||||||||||| ||||    
T  34505246 ttttagcacaccttatgcggggtgaatttatctttctttgagcaatgtattccattttgatgtgtt 34505311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 12396408 - 12396335
Alignment:
Q  218 tgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||| ||||| |||||||||||||||| ||||||||||| |||| ||||||| |||||||| || ||||||||||    
T  12396408 tgattcatcactcttagcacaccttgtgc-gggtgaatcac-tttcgtttgagc-atatattctatcttgatttgtt 12396335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 33855556 - 33855469
Alignment:
Q  207 cagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||| ||| ||| || ||||||||||||| | |||| |||||| |  | | | ||||||||||||||| ||||||||||||||    
T  33855556 cagactttgggtgtttcatcgcttttagcacaccctttgcgaggtgaagctttctccttttgagcaatatatttcattttgatttgtt 33855469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 33925366 - 33925453
Alignment:
Q  207 cagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||| ||| ||| || ||||||||||||| | |||| |||||| |  | | | ||||||||||||||| ||||||||||||||    
T  33925366 cagactttgggtgtttcatcgcttttagcacaccctttgcgaggtgaagctttctccttttgagcaatatatttcattttgatttgtt 33925453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 5675583 - 5675491
Alignment:
Q  202 tgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||    
T  5675583 tgtatcagactttgagtgattcatcgcttttagtacaccttgtgcggggtgaatcacttctcttttgtgcaatatattccattttgatttgtt 5675491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 14782077 - 14781983
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||| |||||||  |||||||||||||||||||| |||||||||| ||  || ||||||||||||||||||||||||||||||    
T  14782077 tttgtaacagactttgggtgattcaccacttttagcacaccttgtgtggggtgaatctctcctcttttgagcaatatattccattttgatttgtt 14781983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 31848147 - 31848054
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||||||||    
T  31848147 tttgtaactgactttgggtgattcatcacttttagcacaccttgtgcggggtgaatcactttgcttttgagc-atttattccattttgatttgtt 31848054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 18489720 - 18489813
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| ||| ||| ||  ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  18489720 tttgtaacagacgttgggtgttttctcacttt-agcacaccttgtgcggggtgaatcacctttcttttgagcaatatattccattttgatttgtt 18489813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 4103171 - 4103083
Alignment:
Q  206 acagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||| ||||||| || |||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||| |||||    
T  4103171 acagactttgggtgattcatcgcttttagcacgccttgtgcggggtgaatcactttcattttgagcaatatattccattttgacttgtt 4103083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 16477720 - 16477626
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcac-ttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| ||| ||| ||  ||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  16477720 tttgtaacagacgttgggtgttttctcacttt-agcacaccttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttgtt 16477626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 5675760 - 5675642
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| ||||||||||||||| |  |||||||||||||||||||||    |||  || |||||| || | ||||||||||||||||||||||||| |    
T  5675760 aatattgtcgaaaaggtgaagttggatacttttttatggctttcgtcaaattctgtaacaatggcgtatggttttcatgattggtggaggcacccacttc 5675661  T
Q  115 tttgtataggtgttgtcta 133  Q
    |||||||||||| ||||||    
T  5675660 tttgtataggtgctgtcta 5675642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 12607334 - 12607242
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgt 293  Q
    ||||||||| |||||| ||||||  |||||||||||||||||||||| |||||||||||| | ||||||| |||| ||||||||||||||||||    
T  12607334 tttgtaacatactttgggtgatttatcacttttagcacaccttgtgc-gggtgaatcactctgcctttgaacaatttattccattttgatttgt 12607242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 25186856 - 25186763
Alignment:
Q  201 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||  ||| | ||||| ||||||||||||| ||||||||||||||||| |||  || |||||||||||||||||||||| |||||||    
T  25186856 ttgtaacagatattgtgcgattcatcacttttagcacgccttgtgcggggtgaattactgatcgtttgagcaatatattccatttttatttgtt 25186763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 2854177 - 2854115
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgattt 291  Q
    ||||||||||||||||||||||||||||||| |   |||||| ||||||||||||||||||||    
T  2854177 ttttagcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgattt 2854115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 294
Target Start/End: Original strand, 9756473 - 9756567
Alignment:
Q  201 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttc-ctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| ||| ||| ||| ||| |||||||||||||||||||||||| ||||||||| || |  |||||||||| ||||||||||| |||||||    
T  9756473 ttgtaactgacattgggtgtttcatcacttttagcacaccttgtgcggagtgaatcaccttactttttgagcaatttattccattttaatttgtt 9756567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 4103341 - 4103226
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    ||||||||||||||||||||| |||| || || |||||||||||||| |    ||| ||| | || |||  | |||||||||||||||| |||||| |||    
T  4103341 aatattgttgaaaaggtgaagatgaattccttcttatggctttcgtcgaattttgtaccaattgcatttagttttcatgattggtggagacacccattac 4103242  T
Q  115 tttgtataggtgttgt 130  Q
    ||||||| ||||||||    
T  4103241 tttgtatgggtgttgt 4103226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 25026798 - 25026737
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgattt 291  Q
    |||||||||| || |||||||||||| |||| || |||||| ||||||||||||||||||||    
T  25026798 tttagcacactttatgcggggtgaattacttctcttttgagtaatatattccattttgattt 25026737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 31794737 - 31794673
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||| ||||||||||||||| ||| |   |||||| |||||||||||||||||||||||    
T  31794737 tttagcacactttgtgcggggtgaattactctgtttttgagtaatatattccattttgatttgtt 31794673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 5195551 - 5195627
Alignment:
Q  217 gtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| ||||||||||||||| |||||||||||| |||| |   | ||||||| ||||||| ||||||||||||||    
T  5195551 gtgattcatcacttttagcacacattgtgcggggtggatcattccgcttttgagc-atatatttcattttgatttgtt 5195627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 9756360 - 9756402
Alignment:
Q  78 gcgtttgctcttcatgattggtggaggcacccactactttgta 120  Q
    ||||||| |||||||||||||||||| |||||||| |||||||    
T  9756360 gcgtttggtcttcatgattggtggagacacccactcctttgta 9756402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 5195369 - 5195410
Alignment:
Q  17 tattgttgaaaaggtgaagttgaactcttttttatggctttc 58  Q
    |||||||||||  ||| |||||||||||||||||||||||||    
T  5195369 tattgttgaaagtgtggagttgaactcttttttatggctttc 5195410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 291
Target Start/End: Complemental strand, 969 - 861
Alignment:
Q  182 tgtgtcactcatctagtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattcc 281  Q
    ||||||| ||| ||||||| |||| ||||||||||||  ||| ||  ||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  969 tgtgtcagtcacctagtttctgtatcagactttgagtatttcatcgtttttagcacac-ttgtgcggggtgaatcacttttcatttgagcaatatattcc 871  T
Q  282 attttgattt 291  Q
    ||||||||||    
T  870 attttgattt 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 1332 - 1223
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    |||||||| |||||||| ||| || | |||||| |||||||||||||||    |||  || ||| ||||| | ||||||||||||||||||||||||| |    
T  1332 aatattgtcgaaaaggtaaagctggattcttttctatggctttcgtcaaattctgtaacaatggtgtttggttttcatgattggtggaggcacccacttc 1233  T
Q  115 tttgtatagg 124  Q
    ||||||||||    
T  1232 tttgtatagg 1223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 7638979 - 7638885
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||  |  |||||||| |||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  7638979 tttgtaacagatatctagtgattcatcacttttagtacaccttatgcggggtgaatcacttttcgtttgagtaatatattccattttgatttgtt 7638885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 7937442 - 7937535
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||| ||| |||||||| | ||||||||||||| ||||||||||||||||||    
T  7937442 tttgtaacagactttgggtgattcatcacttt-agcacaccttgtgcagggggaatcactctgcctttgagcaatagattccattttgatttgtt 7937535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 10752217 - 10752313
Alignment:
Q  197 gtttttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgt 293  Q
    ||||||||||||||||||| |||||||  |||||||| |||||||||| ||||||||||| || | | |||||||||||||||| ||||||||||||    
T  10752217 gtttttgtaacagactttgggtgattcaccacttttaacacaccttgtacggggtgaatccctctacatttgagcaatatattctattttgatttgt 10752313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 10773250 - 10773314
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||    
T  10773250 tttagcacaccttgtgcggggtgaatcacctttcttttgagcaatatatcccattttgatttgtt 10773314  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 30045229 - 30045322
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||  ||| ||| |||||||| ||||||||||||| |||||| |||| |||| |||||||||||||| |||||||||||||||    
T  30045229 tttgtaacagactttaggtgtttcttcactttt-gcacaccttgtgcagggtgattcacctttcttttgagcaatatatcccattttgatttgtt 30045322  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 30188542 - 30188632
Alignment:
Q  204 taacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| |||| ||||||| ||||| |||||||| || |||||||||||||||| |||| |||||||||||||||| ||||| |||||||    
T  30188542 taacagattttgtgtgattcatcactcttagcacatctagtgcggggtgaatcacctttcgtttgagcaatatattctatttttatttgtt 30188632  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 19667575 - 19667485
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||| ||||||||||||||| |||||||||||| |||||||||||||||| | ||||| | ||||||||||||    ||||||||||||||    
T  19667575 tttgtaaccgactttgagtgattcatcacttttagcataccttgtgcggggtgattaactttgcttttgagcaatat----cattttgatttgtt 19667485  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 21477806 - 21477741
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||||||||||||| |  ||||||| |||||||||||||||||||||||    
T  21477806 ttttagcacaccttgtgcggggtgaatcactctgtctttgagtaatatattccattttgatttgtt 21477741  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 29685635 - 29685704
Alignment:
Q  225 tcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||| ||| ||||||| |||||||||||| ||  |||||||||||||||| |||||||||||||    
T  29685635 tcacttttagtacatcttgtgcagggtgaatcactattattttgagcaatatattctattttgatttgtt 29685704  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 41748781 - 41748846
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||  |||||||| ||| |||| ||||| ||||||||||||||||||||||||    
T  41748781 ttttagcacaccttgtatggggtgaaccacctttcttttgaacaatatattccattttgatttgtt 41748846  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 25280451 - 25280389
Alignment:
Q  232 tagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||| |||||||||||||||||| |  || |||||| |||||||||||||||||||||||    
T  25280451 tagcacatcttgtgcggggtgaatcattcctcttttgagtaatatattccattttgatttgtt 25280389  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 7676863 - 7676770
Alignment:
Q  201 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||  ||| ||||||| |||||||||| ||||  | ||| |||||| ||||| | | |||||||||||||||||||||| |||||||    
T  7676863 ttgtaacagatattgtgtgattcatcacttttagtacacgatttgcagggtgattcactgtccatttgagcaatatattccatttttatttgtt 7676770  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 12215533 - 12215597
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||||||||||||||||| | |  |||||| ||||||||||| |||||||||||    
T  12215533 ttttagcacaccttgtgcggggtgaatcac-tctgttttgagtaatatattccactttgatttgtt 12215597  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 16898654 - 16898718
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||  |||||||| |||||||||||| | ||||||||||||||  ||||||||||||||    
T  16898654 tttagcacattttgtgcggagtgaatcactttgcttttgagcaatatatctcattttgatttgtt 16898718  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 31644214 - 31644174
Alignment:
Q  18 attgttgaaaaggtgaagttgaactcttttttatggctttc 58  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  31644214 attgttgaaaaagtgaagttgaactcttttttatggctttc 31644174  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 25280665 - 25280559
Alignment:
Q  15 aatattgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactac 114  Q
    ||||||||  ||||||||||| |||| |||||||||||||| |||||||  | ||||||  |  ||||||   |||||||||| |||||  |||||||||    
T  25280665 aatattgtaaaaaaggtgaaggtgaattcttttttatggctgtcgtcaaatgttgttcctctttcgtttggctttcatgattgatggagatacccactac 25280566  T
Q  115 tttgtat 121  Q
    |||||||    
T  25280565 tttgtat 25280559  T

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Target: scaffold0461 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 2191 - 2285
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||| |||| || ||| ||||||||||||||||||||| ||||||||||| | ||||| |||| ||  ||||||| |||||||    
T  2191 tttgtaacagactttgggtgaatcatcaattttagcacaccttgtgcgggatgaatcactttgcttttgaacaatttacaccattttaatttgtt 2285  T

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Target: scaffold0461; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 9127 - 9221
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||| |||| || ||| ||||||||||||||||||||| ||||||||||| | ||||| |||| ||  ||||||| |||||||    
T  9127 tttgtaacagactttgggtgaatcatcaattttagcacaccttgtgcgggatgaatcactttgcttttgaacaatttacaccattttaatttgtt 9221  T

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Target: scaffold0124 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 40393 - 40299
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||| |||| || ||| ||||||||||||||||||||| ||||||||||| | ||||| |||| ||  ||||||| |||||||    
T  40393 tttgtaacagactttgggtgaatcatcaattttagcacaccttgtgcgggatgaatcactttgcttttgaacaatttacaccattttaatttgtt 40299  T

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Target: scaffold0074 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 36136 - 36042
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||  ||  ||||||| |||||||||||||| |||||||||| ||||| |  |||| |||| |||||||||||||||||||||||||    
T  36136 tttgtaacagatattttgtgattcatcacttttagcacatcttgtgcgggatgaatgatatttcatttgggcaatatattccattttgatttgtt 36042  T

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Target: scaffold0153 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 24922 - 25015
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||||||  ||| ||  |||||||| ||||||||||||| ||| || |||| |||| |||||||||||||| |||||||||||||||    
T  24922 tttgtaacagactttaggtgttttttcactttt-gcacaccttgtgcagggcgattcacctttcttttgagcaatatatcccattttgatttgtt 25015  T

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Target: scaffold0267 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 10996 - 11060
Alignment:
Q  230 tttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||| ||||||||||||||||||||||||| |   |||||| |||||||||||||||||||||||    
T  10996 tttaacacaccttgtgcggggtgaatcactctctttttgagtaatatattccattttgatttgtt 11060  T

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Target: scaffold0423 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 10081 - 10015
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcact-tttcctttgagcaatatattccattttgatttgtt 294  Q
    ||||||||||||||||||||||||||||| | | |  |||||| |||||||||||||||||||||||    
T  10081 ttttagcacaccttgtgcggggtgaatcattctgttttttgagtaatatattccattttgatttgtt 10015  T

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Target: scaffold0116 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 42254 - 42189
Alignment:
Q  229 ttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||| ||||||||||||||||||||||   |||||| |||| ||| ||||||||||||||    
T  42254 ttttagcacatcttgtgcggggtgaatcactttgtttttgagtaataaatttcattttgatttgtt 42189  T

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Target: scaffold0334 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 3037 - 3131
Alignment:
Q  200 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 294  Q
    |||||||||||| ||  |||| ||| || |||||||||||||||||||| ||||||   || | ||||||||||||||||  ||||| |||||||    
T  3037 tttgtaacagacattaggtgactcgccatttttagcacaccttgtgcggagtgaatgcattcttctttgagcaatatattttattttaatttgtt 3131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1822 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1822
Description:

Target: scaffold1822; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 1303 - 1200
Alignment:
Q  18 attgttgaaaaggtgaagttgaactcttttttatggctttcgtcaagcggtgttccattggcgtttgctcttcatgattggtggaggcacccactacttt 117  Q
    ||||||||||| |||||| ||||||||||||||||||||  ||| |  | |||| | |   |||||| | || |||||||||||||| | ||||||||||    
T  1303 attgttgaaaaagtgaagctgaactcttttttatggcttcggtctaatgttgtttcttgttcgtttggttttaatgattggtggaggtatccactacttt 1204  T
Q  118 gtat 121  Q
    ||||    
T  1203 gtat 1200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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