View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_high_12 (Length: 429)
Name: NF15644_high_12
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 382
Target Start/End: Original strand, 36332919 - 36333283
Alignment:
| Q |
20 |
ataataataatatggatcagcagaatcttcagctacaacaacagaagatgataatatccaatgatgcttctgctgctataagaacagcctcttcatcaca |
119 |
Q |
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| T |
36332919 |
ataataataatatggatcagcagaatcttcagctacaacaacagaagatgataatatccaatgatgcttctgctgctataagaacagcctcttcatcaca |
36333018 |
T |
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| Q |
120 |
gaatcaaatatcagcagcagccaaagaaaaggttaatagtnnnnnnn--taatcactgatactgttaaagtgttaaatcacttagttatctgtttccata |
217 |
Q |
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| T |
36333019 |
gaatcaaatatcagcagcagccaaagaaaaggttaatagtaaaaaaaaataatcactgatactgttaaagtgttaaatcacttagttatctgtttccata |
36333118 |
T |
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| Q |
218 |
tcccataaactaagggaaagtttggtctttctttatttactgttttgaatttgtactatcttcttggtcacgtaaaaacagcacagatcccaacagattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36333119 |
tcccataaactaagggaaagtttggtctttctttatttactgttttgaatttgtactatcttcttggtcacgtaaaaacagcacagatcccaacagattt |
36333218 |
T |
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| Q |
318 |
cagaaaatcaaaacaacagagagttttcctgattcctgaacgattttctgacatgaaaacatgat |
382 |
Q |
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| T |
36333219 |
cagaaaatcaaaacaacagagagttttcctgattcctgaacgattttctgacatgaaaacatgat |
36333283 |
T |
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