View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15644_high_16 (Length: 329)
Name: NF15644_high_16
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 23947574 - 23947875
Alignment:
| Q |
17 |
cattaggaggatcttgattgttgtctctaccttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23947574 |
cattaggaggatcttgattgttgtctctaccttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgct |
23947673 |
T |
|
| Q |
117 |
aatatcatgattcaaatcaggtggtaattcggattggagagagtgaagttgagtaagaattgaatcctgaaaaagaggaaccctaacaattgggccagac |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23947674 |
aatatcatgattcgaatcaggtggtaattcggattggagagagtgaagttgagtaagaattgaatcctgaaaaagaggaaccctaacaattgggccagac |
23947773 |
T |
|
| Q |
217 |
atattggagacgtaaatgggtccaccccttggaattgagattgaaggatcatcaattgaacattctaattccaattcatcatcatccattattcttattc |
316 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23947774 |
atattggagacgaaaatgggtccaccccttggaattgagattgaaggatcatcaattgaacattctaattccaattcatcatcatccattattcttattc |
23947873 |
T |
|
| Q |
317 |
tt |
318 |
Q |
| |
|
|| |
|
|
| T |
23947874 |
tt |
23947875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 48 - 273
Target Start/End: Original strand, 56241192 - 56241423
Alignment:
| Q |
48 |
ttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgc---taatatcatgattcaaatc---aggtggt |
141 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||||||||| || || ||||||| |
|
|
| T |
56241192 |
ttgaaagacttgtttcaaagacatgtccattaactcgtcctcagtaaaaactttaagatcatcgacgacggtaatatcataatcatgatgttgaggtggt |
56241291 |
T |
|
| Q |
142 |
aattcggattggagagagtgaagttgagtaagaattgaatcctgaaaaagaggaaccctaacaattgggccagacatattggagacgtaaatgggtccac |
241 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56241292 |
aattcagattgtagagagtgaagttgagaaagaagtgaatcctgaaaaagaggaaccctaacaattgggccagacatattggagacgtaaatgggtccac |
56241391 |
T |
|
| Q |
242 |
cccttggaattgagattgaaggatcatcaatt |
273 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||| |
|
|
| T |
56241392 |
ccctcggaattgaaattgaaggattatcaatt |
56241423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 16105366 - 16105065
Alignment:
| Q |
17 |
cattaggaggatcttgattgttgtctctaccttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16105366 |
cattaggaggatcttgattgttgtctctaccttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgct |
16105267 |
T |
|
| Q |
117 |
aatatcatgattcaaatcaggtggtaattcggattggagagagtgaagttgagtaagaattgaatcctgaaaaagaggaaccctaacaattgggccagac |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16105266 |
gatatcatgattcgaatcaggtggtaattcggattggagagagtgaagttgagtaagaattgaatcttgaaaaagaggaaccctaacaattgggccagac |
16105167 |
T |
|
| Q |
217 |
atattggagacgtaaatgggtccaccccttggaattgagattgaaggatcatcaattgaacattctaattccaattcatcatcatccattattcttattc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16105166 |
atattggagacgtaaatgggtccaccccttggaattgagattgaaggatcatcaattgaaaattctaattccaattcatcatcatccattattcttattc |
16105067 |
T |
|
| Q |
317 |
tt |
318 |
Q |
| |
|
|| |
|
|
| T |
16105066 |
tt |
16105065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University