View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15644_high_17 (Length: 321)

Name: NF15644_high_17
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15644_high_17
NF15644_high_17
[»] chr2 (24 HSPs)
chr2 (1-314)||(387369-387693)
chr2 (1-231)||(39338510-39338751)
chr2 (1-231)||(10524295-10524529)
chr2 (137-231)||(14436916-14437010)
chr2 (110-225)||(41877207-41877322)
chr2 (1-231)||(7874485-7874709)
chr2 (1-231)||(14106172-14106409)
chr2 (136-231)||(5254590-5254684)
chr2 (1-215)||(17116553-17116765)
chr2 (112-231)||(14405512-14405630)
chr2 (136-231)||(43816096-43816191)
chr2 (134-231)||(3745676-3745773)
chr2 (135-224)||(13512495-13512584)
chr2 (136-225)||(43248882-43248971)
chr2 (1-231)||(7460870-7461107)
chr2 (154-230)||(15457817-15457893)
chr2 (134-231)||(45311453-45311550)
chr2 (110-221)||(22888552-22888662)
chr2 (165-231)||(9823695-9823761)
chr2 (148-224)||(7455601-7455676)
chr2 (163-231)||(25280964-25281032)
chr2 (12-113)||(5254459-5254557)
chr2 (134-163)||(15457278-15457307)
chr2 (81-109)||(22884931-22884959)
[»] chr7 (23 HSPs)
chr7 (1-231)||(31971784-31972020)
chr7 (1-230)||(3867311-3867545)
chr7 (1-231)||(47325534-47325771)
chr7 (6-231)||(44353213-44353444)
chr7 (1-231)||(5859932-5860174)
chr7 (1-231)||(10244377-10244612)
chr7 (13-231)||(25161018-25161240)
chr7 (1-192)||(38306456-38306653)
chr7 (1-231)||(3419048-3419282)
chr7 (1-229)||(37795184-37795426)
chr7 (110-231)||(33434480-33434601)
chr7 (111-231)||(6585198-6585318)
chr7 (111-230)||(41089396-41089512)
chr7 (110-229)||(37795635-37795754)
chr7 (1-231)||(40726140-40726390)
chr7 (110-231)||(34391493-34391614)
chr7 (110-231)||(42454383-42454504)
chr7 (1-217)||(3419321-3419541)
chr7 (112-231)||(48161690-48161808)
chr7 (126-226)||(43482232-43482331)
chr7 (134-229)||(11378772-11378866)
chr7 (1-231)||(35745481-35745709)
chr7 (1-34)||(33435304-33435337)
[»] chr8 (28 HSPs)
chr8 (1-231)||(31207011-31207248)
chr8 (6-231)||(20138627-20138858)
chr8 (1-231)||(12897925-12898161)
chr8 (1-231)||(24995044-24995280)
chr8 (1-227)||(37986508-37986744)
chr8 (110-231)||(22773932-22774053)
chr8 (110-231)||(32065934-32066054)
chr8 (20-231)||(36631038-36631254)
chr8 (1-227)||(16457128-16457361)
chr8 (1-231)||(15821026-15821266)
chr8 (1-231)||(9519695-9519938)
chr8 (12-228)||(35815896-35816121)
chr8 (127-230)||(35821583-35821685)
chr8 (110-231)||(3584048-3584170)
chr8 (110-192)||(27889157-27889239)
chr8 (110-192)||(27947815-27947897)
chr8 (1-176)||(34388711-34388892)
chr8 (4-231)||(41893052-41893285)
chr8 (138-231)||(13538324-13538417)
chr8 (138-231)||(13686057-13686150)
chr8 (171-231)||(9659474-9659534)
chr8 (144-225)||(38577441-38577522)
chr8 (1-80)||(35821435-35821514)
chr8 (195-231)||(34866309-34866345)
chr8 (133-176)||(10837941-10837984)
chr8 (1-52)||(32066130-32066181)
chr8 (6-52)||(22773815-22773861)
chr8 (18-106)||(17656518-17656606)
[»] chr1 (19 HSPs)
chr1 (14-231)||(30685573-30685797)
chr1 (1-227)||(24449584-24449816)
chr1 (1-231)||(41920652-41920889)
chr1 (12-224)||(46814121-46814342)
chr1 (110-231)||(31584689-31584809)
chr1 (1-231)||(5459356-5459587)
chr1 (20-231)||(24684142-24684358)
chr1 (1-180)||(46692519-46692705)
chr1 (1-231)||(5389077-5389307)
chr1 (127-231)||(6804866-6804969)
chr1 (127-231)||(7002515-7002619)
chr1 (126-231)||(40216155-40216260)
chr1 (134-231)||(14320658-14320755)
chr1 (110-231)||(24659241-24659351)
chr1 (136-225)||(27031496-27031585)
chr1 (5-80)||(6804739-6804814)
chr1 (23-109)||(32882583-32882668)
chr1 (1-36)||(31585610-31585645)
chr1 (1-44)||(7857847-7857891)
[»] chr5 (12 HSPs)
chr5 (1-231)||(18593438-18593674)
chr5 (1-231)||(7161663-7161902)
chr5 (2-231)||(29087676-29087903)
chr5 (1-231)||(34378293-34378531)
chr5 (110-231)||(698678-698799)
chr5 (126-231)||(7452915-7453020)
chr5 (111-224)||(5656749-5656862)
chr5 (141-231)||(18313303-18313393)
chr5 (138-231)||(18255099-18255192)
chr5 (129-180)||(41250893-41250944)
chr5 (76-111)||(7195078-7195113)
chr5 (67-111)||(30097593-30097636)
[»] chr3 (29 HSPs)
chr3 (1-231)||(47235893-47236130)
chr3 (1-231)||(2392152-2392392)
chr3 (1-231)||(19176699-19176938)
chr3 (6-231)||(34475407-34475637)
chr3 (1-231)||(53248096-53248332)
chr3 (1-231)||(2393915-2394156)
chr3 (1-219)||(43012570-43012796)
chr3 (1-231)||(45164050-45164285)
chr3 (1-223)||(9583710-9583940)
chr3 (130-231)||(21343678-21343779)
chr3 (110-231)||(31483191-31483312)
chr3 (112-209)||(30352110-30352207)
chr3 (104-225)||(40023224-40023345)
chr3 (110-231)||(50305223-50305344)
chr3 (1-231)||(23327997-23328237)
chr3 (12-231)||(45399002-45399217)
chr3 (117-224)||(17551275-17551382)
chr3 (113-229)||(37158618-37158735)
chr3 (134-231)||(4463734-4463831)
chr3 (136-231)||(25506719-25506814)
chr3 (133-225)||(50559978-50560070)
chr3 (168-231)||(47439284-47439347)
chr3 (1-78)||(20611977-20612054)
chr3 (138-231)||(5556918-5557011)
chr3 (1-52)||(17551147-17551198)
chr3 (24-106)||(7105059-7105140)
chr3 (6-80)||(30352248-30352322)
chr3 (76-109)||(32010030-32010063)
chr3 (1-113)||(40023346-40023459)
[»] chr4 (20 HSPs)
chr4 (1-231)||(8255222-8255459)
chr4 (1-231)||(8268640-8268877)
chr4 (1-231)||(30964632-30964869)
chr4 (1-231)||(8705789-8706030)
chr4 (110-231)||(35329318-35329439)
chr4 (2-215)||(20464786-20465005)
chr4 (110-231)||(27555579-27555701)
chr4 (130-231)||(7703018-7703118)
chr4 (127-231)||(4306033-4306136)
chr4 (1-231)||(30167212-30167450)
chr4 (134-231)||(46698428-46698525)
chr4 (134-227)||(49528421-49528514)
chr4 (136-231)||(2826118-2826213)
chr4 (112-230)||(11281375-11281493)
chr4 (110-231)||(36689454-36689575)
chr4 (136-225)||(35341006-35341097)
chr4 (133-226)||(31050315-31050408)
chr4 (148-231)||(9750116-9750198)
chr4 (133-225)||(52868766-52868859)
chr4 (1-74)||(31050474-31050548)
[»] chr6 (10 HSPs)
chr6 (59-231)||(3254211-3254389)
chr6 (1-231)||(10542027-10542262)
chr6 (1-227)||(3117688-3117922)
chr6 (84-231)||(15944274-15944431)
chr6 (1-113)||(14663272-14663384)
chr6 (134-188)||(33697789-33697843)
chr6 (147-231)||(15132489-15132573)
chr6 (158-226)||(14663414-14663480)
chr6 (75-111)||(15120380-15120416)
chr6 (194-222)||(16598939-16598967)
[»] scaffold0343 (1 HSPs)
scaffold0343 (1-225)||(5901-6131)
[»] scaffold0085 (1 HSPs)
scaffold0085 (112-231)||(48648-48767)
[»] scaffold0172 (1 HSPs)
scaffold0172 (127-230)||(19245-19349)
[»] scaffold0434 (1 HSPs)
scaffold0434 (110-208)||(2345-2443)
[»] scaffold0068 (2 HSPs)
scaffold0068 (178-231)||(35473-35526)
scaffold0068 (39-113)||(35554-35623)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 8e-89; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 387369 - 387693
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  387369 ttttattttgagggtgttctttgggggtgaatagtgacgatgggcggtggtgaattttgtgtttacaatgcttg-tttttgtgaaggagtctgttttagg 387467  T
Q  101 tggtgatgt----------gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||          ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  387468 tggtgatgtgttttggtgggtttatcttcatgggtgtttttaagtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 387567  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt--nnnnnnnnnntcagtcatgcaatagccaaaatcaagaaagtttggtacaaattatta 288  Q
     |  | ||||||| |||||||||||||||||| || |||||              ||| |||||||||||||||||||||||||||||||||||||||||    
T  387568 ctgcgacttgcggtgatgacgtttaataatatctgtcgattaaaaaaaaaaaaaaagttatgcaatagccaaaatcaagaaagtttggtacaaattatta 387667  T
Q  289 ggttgatgtaaatgtaattcatctca 314  Q
    |||| ||||||||||||| |||||||    
T  387668 ggttcatgtaaatgtaatccatctca 387693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 39338751 - 39338510
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaag-gagtctgttttag 99  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||| ||||| ||  | ||||||||||||||||||||| |     |||||||||||||    
T  39338751 ttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatact-tgtttacagtgcttgtttttttttttttgagtctgttttag 39338653  T
Q  100 gtgg-tgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccata 188  Q
    |||| ||||||||||          ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39338652 gtgggtgatgtgttttggtgggtttatcttcaggggtgttttcaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccata 39338553  T
Q  189 ccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    | ||  ||||| ||  |||| ||||||||||||||||||||||    
T  39338552 cattgcgtcttacgatgatggcgtttaataatatttgccgatt 39338510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10524295 - 10524529
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||| |||||||||||||| ||||||||||||  |||||||||||||| ||   |||||||| ||||||||||||||     |||| ||||||||     
T  10524295 ttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacggtgcttgttttttg-----gagtttgttttaga 10524389  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
     ||||| ||||||          ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  10524390 cggtgacgtgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgctgcaccatttgtatattgtttcgtccatacc 10524489  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  ||||||| ||| || ||||||||||||||||||||||    
T  10524490 ttgcgtcttgcaggg-tggcgtttaataatatttgccgatt 10524529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 14437010 - 14436916
Alignment:
Q  137 gttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| ||||    
T  14437010 gttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgctgatt 14436916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 41877322 - 41877207
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||  ||||||||||||||     
T  41877322 gtttatcttcaggggtgttttcaggtggttatggtgtaccgtctatatacggtaccatttgtatattgtttcgtccatatcttgcgtcttgcggggatgg 41877223  T
Q  210 cgtttaataatatttg 225  Q
     |||||||||||||||    
T  41877222 agtttaataatatttg 41877207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7874485 - 7874709
Alignment:
Q  1 ttttattttgaggg-tgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttag 99  Q
    |||||||||||||| |||||||||||| |||||||||  |||||| ||| ||| ||  ||||||||||||| |||||| | || |||| ||| || ||||    
T  7874485 ttttattttgagggatgttctttgggg-tgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttct-gtcaaggtgtccgtcttag 7874582  T
Q  100 gtggtgatgtgtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtctt 199  Q
    |||       |||||| ||||||||  || || |||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||    
T  7874583 gtga------gtttatattcaggggctttgtttggtggttatggtgtaccgtctatatgcggcgccatttgtatcttgttttgtctataccttgtgtctt 7874676  T
Q  200 gcggggatgacg-tttaataatatttgccgatt 231  Q
    ||| ||||| || ||||||||||||||| ||||    
T  7874677 gcgaggatggcgttttaataatatttgctgatt 7874709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 14106409 - 14106172
Alignment:
Q  1 ttttattttgaggg-tgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttag 99  Q
    |||||||||||||| ||||||||||||||||||||||  |||| | ||| ||| ||  |||||||||| || |||||| | || |||| ||| || ||||    
T  14106409 ttttattttgaggggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttacaatgtttgtttct-gttaaggtgtccgtcttag 14106311  T
Q  100 gtggtgatgtgttt---------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||| |||||||         |||||||||||  | ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  14106310 gtggtgttgtgttttggtgggttatcttcaggggcttgttt-ggtggttatggtgtaccgtctatatgcggcaccatttctatcttgtttcgt-catacc 14106213  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
     |  |||||||| ||||| ||||||||||||||||| ||||    
T  14106212 ctgcgtcttgcgaggatggcgtttaataatatttgctgatt 14106172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 5254590 - 5254684
Alignment:
Q  136 ggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  5254590 ggttatggtgtaccgtctatatgcggcaccatttgtatcta-tttcgtccataccttacgtcttgcgaggatgacgtttaataatatttgctgatt 5254684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 17116765 - 17116553
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| ||||||||| ||  |||||||||||||| ||   ||||||||||||||| |||||| |     |||||||||||||    
T  17116765 ttttattttgagggtgttctttgtgggtgagtaatgacgatgggcggtggtggataccgtgtttacagtgctttttttttttttt--agtctgttttagg 17116668  T
Q  101 tggtgatgtgtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttg 200  Q
     |||||||||||| | |  |      ||    ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||  ||||||    
T  17116667 cggtgatgtgtttctgtggatttatcttcaggggtggttatagtgtaccgtctatatgcggcatcatttgtatcttgtctcgtccataccttgcgtcttg 17116568  T
Q  201 cggggatgacgttta 215  Q
    |||||||||||||||    
T  17116567 cggggatgacgttta 17116553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 14405512 - 14405630
Alignment:
Q  112 ttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacg 211  Q
    ||||||| |||||  || |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| || || |||    
T  14405512 ttatctttaggggctttgttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttg-ttcgttcataccttacgtcttgcaggaataacg 14405610  T
Q  212 tttaataatatttgccgatt 231  Q
    ||||||||||||||| ||||    
T  14405611 tttaataatatttgctgatt 14405630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 43816191 - 43816096
Alignment:
Q  136 ggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||  || ||||||| ||||||||||||||||||||||||||    
T  43816191 ggttatggtgtaccgtctatatgcggcatcatttgtactttgtttcgtccataccttgcgttttgcgggaatgacgtttaataatatttgccgatt 43816096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 3745676 - 3745773
Alignment:
Q  134 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||  |||||  ||||||||| ||||||||||||||||||||    
T  3745676 gtggttatgatgtaccatctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttatggggatgacatttaataatatttgccgatt 3745773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 13512584 - 13512495
Alignment:
Q  135 tggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatattt 224  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| ||  |||||||||| |||||||||||||||||||    
T  13512584 tggttatgttgtaccgtctatatgcggcatcatttgtattttgtttcgtccatacattgcgtcttgcgggaatgacgtttaataatattt 13512495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 43248971 - 43248882
Alignment:
Q  136 ggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttg 225  Q
    ||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  43248971 ggttatgatataccgtctatatgcggcgccatttatatcttgtttcgtccataccttgtgtcttgtgaggatgacgtttaataatatttg 43248882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7460870 - 7461107
Alignment:
Q  1 ttttattttgaggg-tgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttag 99  Q
    |||||||||||||| |||||||||||| |||||||||  |||| | ||| ||| || |||||||||||||| |||||| | || |||| ||| || ||||    
T  7460870 ttttattttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgtttacagtgtttgtttct-gttaaggtgtccgtcttag 7460968  T
Q  100 gtggtgatgtgttt---------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    | |||| |||| ||         |||||||||||  | ||| |||||||||||||||| ||||||||||  |||||||||||| ||||||||| |||||     
T  7460969 gcggtgttgtgatttggtgggttatcttcaggggcttgttt-ggtggttatggtgtactgtctatatgcaacaccatttgtattttgtttcgt-catact 7461066  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
     |  |||||||||||||||||||||||||||||||| ||||    
T  7461067 ctgcgtcttgcggggatgacgtttaataatatttgctgatt 7461107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 15457817 - 15457893
Alignment:
Q  154 atatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgat 230  Q
    ||||||||||||||||||||||||||||||||||| | |  |||||||||||||||||||||||| |||||||||||    
T  15457817 atatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaatattatttgccgat 15457893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 45311550 - 45311453
Alignment:
Q  134 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||||| | ||||   |||||||||| || |||||||||||||| |||||||    
T  45311550 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 45311453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 22888662 - 22888552
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    ||||||||||||||| ||| |||| |||||||| | ||||||||||||| |||||||||| || |||||||| ||||||| ||  ||||||| |||||||    
T  22888662 gtttatcttcaggggtgttcttagttggttatgatataccgtctatatgtggcaccatttctaccttgtttcatccatacattgcgtcttgc-gggatga 22888564  T
Q  210 cgtttaataata 221  Q
    | ||||||||||    
T  22888563 catttaataata 22888552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 9823695 - 9823761
Alignment:
Q  165 catttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||||||| | |||||||| |||||||||| |||| ||||||||||||||||||||||    
T  9823695 catttgtatcttgtttcattcataccttgtgtcttgcggagatggcgtttaataatatttgccgatt 9823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 7455601 - 7455676
Alignment:
Q  148 ccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatattt 224  Q
    |||||||| |||||||||||||||||||| |||||| |||||| |  |||||||||||||||||||||||| |||||    
T  7455601 ccgtctatttgcggcaccatttgtatcttatttcgttcatacc-tgcgtcttgcggggatgacgtttaatattattt 7455676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 25281032 - 25280964
Alignment:
Q  163 accatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||| |||||||||||||||||||| |  |||||| ||||||||||||||||||||||| ||||||    
T  25281032 accatttatatcttgtttcgtccataccctgcgtcttgtggggatgacgtttaataatattttccgatt 25280964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 5254459 - 5254557
Alignment:
Q  12 gggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtgatgtgt 111  Q
    ||||||||||||||  |||||||||  |||||| ||| ||| ||  ||||||||||||| ||| ||| ||| |||| ||| || ||||||||||||||||    
T  5254459 gggtgttctttggg--tgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttg-tttctgttaaggtgtccgtcttaggtggtgatgtgt 5254555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 15457278 - 15457307
Alignment:
Q  134 gtggttatggtgtaccgtctatatgcggca 163  Q
    ||||||||||||||||||||||||||||||    
T  15457278 gtggttatggtgtaccgtctatatgcggca 15457307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 22884959 - 22884931
Alignment:
Q  81 gtgaaggagtctgttttaggtggtgatgt 109  Q
    |||||||||||||||||||||||||||||    
T  22884959 gtgaaggagtctgttttaggtggtgatgt 22884931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31972020 - 31971784
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||| |||||||||||||| ||||||||||||  |||||||||||||  ||   ||||||||||||||||||||||     ||||| |||||||||    
T  31972020 ttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgataccgtgtttacagtgcttgttttttt----ggagtttgttttagg 31971925  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||| ||||||||          ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31971924 tggttatgtgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 31971825  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  |||||||||||||| ||||||||||||||||||||||    
T  31971824 ttgcgtcttgcggggatggcgtttaataatatttgccgatt 31971784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3867311 - 3867545
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||||||||||||||||  ||||| |||||||| || | |||||||||||   ||||||| |||||||||| |||||| ||    
T  3867311 ttttattttgagggtgttctttgggggtgagtagtgacgatggacggtggtggatatcgtgtttacagt---tgttttt-gtgaaggagtttgttttggg 3867406  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  3867407 tggtgatgtgttttggtgagtttatcttcaggggtgtttttatgttgttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtcaatacc 3867506  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgat 230  Q
    ||| ||||||| ||||||| ||||||||||||||||||||    
T  3867507 ttacgtcttgc-gggatgaagtttaataatatttgccgat 3867545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 47325771 - 47325534
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||| || || ||  ||||||||||||||||||||||| |  |  ||| |||||||||    
T  47325771 ttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatgatggatactgtgtttacagtgcttgtttttttttga--agtttgttttagg 47325674  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          |||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47325673 tggtgatgtgttttggtgggtttatcttcagagt-gtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccatacc 47325575  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  ||||| || ||||||||||||||||||||||||||||    
T  47325574 ttgcgtcttacgaggatgacgtttaataatatttgccgatt 47325534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 44353444 - 44353213
Alignment:
Q  6 ttttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtg 105  Q
    ||||||||||||||||||  |||||||||||  ||||| |||||||| ||   |||||||||||||||| |||||     ||||||||||||||||||||    
T  44353444 ttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt----ggagtctgttttaggtggtg 44353349  T
Q  106 atgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatg 195  Q
    ||||||||          |||| || ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||  |    
T  44353348 atgtgttttggtgggtttatctccatgggtgtttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcg 44353249  T
Q  196 tcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||| ||||||||||||||| ||||||    
T  44353248 tcttgcggggatggcgtttaataatatttaccgatt 44353213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 5860174 - 5859932
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaagg--agtctgtttta 98  Q
    ||||||||| ||||||||||||| || |||||||||  |||||||  ||||||||   ||||| | |||||||||||||| |       |||||||||||    
T  5860174 ttttattttcagggtgttctttgtggatgagtagtgacgatgggcaatggtgaataccgtgttaatagtgcttgtttttttttttttttagtctgtttta 5860075  T
Q  99 ggtggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccata 188  Q
    |||||||||||||||          ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5860074 ggtggtgatgtgttttggtgggattatctttaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccata 5859975  T
Q  189 ccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
     | |  |||||||||||||||||||||||||||||||||||||    
T  5859974 tcatgcgtcttgcggggatgacgtttaataatatttgccgatt 5859932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10244377 - 10244612
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||| || ||||||| |||||| ||||||||||||  |||||||| ||||| ||    ||||||| |||||| |||||||     |||| |||||||||    
T  10244377 ttttagttggagggtggtctttgtgggtgagtagtgacgatgggcgatggtggataccatgtttacggtgcttattttttg-----gagtttgttttagg 10244471  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10244472 tggtgatgtgttttcgtggacttatcttcaggggtgtttttaggtggttatggtgtactgtctatatgcggcaccatttgtatcttgtttcgtccatacc 10244571  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  ||||||||| ||||  |||||||||||||||||||||    
T  10244572 ttgcgtcttgcggagatggagtttaataatatttgccgatt 10244612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 25161018 - 25161240
Alignment:
Q  13 ggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtgatgtgtt 112  Q
    ||||||||||| ||||||||||||  |||||||| ||||| ||  | |||||||| |||||||||||||      |||||||||||||||||||||||||    
T  25161018 ggtgttctttgtgggtgagtagtgacgatgggcgttggtggatactatgtttacattgcttgttttttga-----agtctgttttaggtggtgatgtgtt 25161112  T
Q  113 t----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcg 202  Q
    |          |||| |||||  |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||  |||| ||    
T  25161113 ttggtgggtttatctccagggt-gtttttaggtggttatggtgtaccgtctatatacggcaccatttgcatcttgtttcgttcataccttaaatcttacg 25161211  T
Q  203 gggatgacgtttaataatatttgccgatt 231  Q
    |||||||||||||||||||||||||||||    
T  25161212 gggatgacgtttaataatatttgccgatt 25161240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 38306456 - 38306653
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||||||||||||||||||  |||||||||||  |||||| ||||||| || | |||| | |||| |||||||||||    ||||| |||||||||    
T  38306456 ttttattttgagggtgttctttgtaggtgagtagtgacgatgggtggtggtggatatcgtgtctgcagttcttgttttttg----ggagtttgttttagg 38306551  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38306552 tggtgatgtgttttggttggtttatctttaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 38306651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3419282 - 3419048
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||| |||||||| |||| | |||||||||| |||||  |||||||| || |  |||||||| ||||||||||||     ||| |||||||||||    
T  3419282 ttttattttaagggtgttttttgtgagtgagtagtgatgatgaacggtggtggatatcatgtttacaatgcttgttttttt----ggattctgttttagg 3419187  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    ||||| |||||||          ||||||||| | ||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||    
T  3419186 tggtgttgtgttttggtgagtttatcttcaggagtgtttttaggtggttatggtgtaccgtctat--gcggcaacgtttgtatcttgtttcgtccatacc 3419089  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  ||||||||||||||||||||||||||||||| |||||    
T  3419088 ttgcgtcttgcggggatgacgtttaataatatttgtcgatt 3419048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 37795184 - 37795426
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaa----ggagtctgttt 96  Q
    ||||||||||||||||||||||| || | ||||||  ||||||||||||||| ||   ||||||||||||||| |||||| |       |||||||||||    
T  37795184 ttttattttgagggtgttctttgtggttaagtagtaatgatgggcggtggtggataccgtgtttacagtgcttttttttttttttttttggagtctgttt 37795283  T
Q  97 taggtggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtcca 186  Q
    ||||||||||| |||||          ||||||| ||| |||||||||||||||||||||||||| ||   ||| |||||||||||||||||||||||||    
T  37795284 taggtggtgatatgtttttgtgggtttatcttcatgggtgtttttaggtggttatggtgtaccgtttaatcgcgacaccatttgtatcttgtttcgtcca 37795383  T
Q  187 taccttatgtcttgcggggatgacgtttaataatatttgccga 229  Q
    ||||||  |||||| ||||| ||||||||||||||||||||||    
T  37795384 taccttgcgtcttgtggggacgacgtttaataatatttgccga 37795426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 33434601 - 33434480
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    |||||| | |||||| |||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||  || |||||||||||     
T  33434601 gtttatttccaggggtgtttttaggtggttatggtgtaccgtctatatacagaaccatttgtatcttgcttcgtccataccttgcgtattgcggggatgg 33434502  T
Q  210 cgtttaataatatttgccgatt 231  Q
    ||||||||||||||||||||||    
T  33434501 cgtttaataatatttgccgatt 33434480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 231
Target Start/End: Original strand, 6585198 - 6585318
Alignment:
Q  111 tttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgac 210  Q
    ||||||||||||||  || || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||   ||||||||||||| |    
T  6585198 tttatcttcaggggttttgtttggtggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccattccttgcatcttgcggggatggc 6585297  T
Q  211 gtttaataatatttgccgatt 231  Q
    |||||||||||||||| ||||    
T  6585298 gtttaataatatttgctgatt 6585318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 41089512 - 41089396
Alignment:
Q  111 tttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgac 210  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||| | |||| |    
T  41089512 tttatcttcatgggtgtttttaggtggttatggtgtaccgtctatatgcggcacca-ttgtatcttgtttcgtccatacct--tgtcttgcagagatggc 41089416  T
Q  211 gtttaataatatttgccgat 230  Q
     |||||||||||||||||||    
T  41089415 atttaataatatttgccgat 41089396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 37795635 - 37795754
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    ||||||||||| ||| |||||||||||||||||||||||||| ||   ||| |||||||||||||||||||||||||||||||  |||||| ||||| ||    
T  37795635 gtttatcttcatgggtgtttttaggtggttatggtgtaccgtttaatcgcgacaccatttgtatcttgtttcgtccataccttgcgtcttgtggggacga 37795734  T
Q  210 cgtttaataatatttgccga 229  Q
    ||||||||||||||||||||    
T  37795735 cgtttaataatatttgccga 37795754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 40726390 - 40726140
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| || ||||||||| |||| |||||||||| ||   |||||||| ||||||| ||||| ||   ||||||||||||||    
T  40726390 ttttattttgagggtgttctttgtgg-tgagtagtgatgataggcggtggtggataccgtgtttaccgtgcttgatttttttg---gagtctgttttagg 40726295  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtat--------------ctt 176  Q
    |||| ||||||||          |||| |||||| |||||||||||||||||||||||||||||||||  ||| |||||||||              |||    
T  40726294 tggtaatgtgttttggtgggtttatctccaggggtgtttttaggtggttatggtgtaccgtctatatgtagcatcatttgtattttgtttcgtgtatctt 40726195  T
Q  177 gtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  40726194 gtttcgtccataccttgcgtcttgcggggatgacatttaataatatttgccgatt 40726140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 34391493 - 34391614
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    |||||||||||||||  || || ||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||| |  ||| |||||||||||    
T  34391493 gtttatcttcaggggctttgtttggtggttatggtgtatcgtctatatgcggcattatttgtatcttgtttcgtccataccctgcgtcctgcggggatga 34391592  T
Q  210 cgtttaataatatttgccgatt 231  Q
    ||||||||||||||||| ||||    
T  34391593 cgtttaataatatttgctgatt 34391614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 42454504 - 42454383
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    ||||||||||| ||   |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||  |||||||||||||||    
T  42454504 gtttatcttcaaggatttttttaggtggttatggtgtactgtctatatgcggcaccatttgtaccttgtttcgtctatatcttgcgtcttgcggggatga 42454405  T
Q  210 cgtttaataatatttgccgatt 231  Q
     |||||||||||||||| ||||    
T  42454404 tgtttaataatatttgctgatt 42454383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3419541 - 3419321
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||| ||||||||||||| | ||||||||||  ||||  |||||||| || |  |||||||| || |||||||||     ||| |||||||||||    
T  3419541 ttttattttaagggtgttctttgtgagtgagtagtgacgatgaacggtggtggatatcatgtttacaatgnttgttttttt----ggattctgttttagg 3419446  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    ||||| |||||||          ||||||||| | ||||||||||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||    
T  3419445 tggtgttgtgttttggtgagtttatcttcaggagtgtttttaggtggttatggtgtaccgtctat--gcggcaacgtttgtatcttgtttcgtccatacc 3419348  T
Q  191 ttatgtcttgcggggatgacgtttaat 217  Q
    ||  |||||||||||||| ||||||||    
T  3419347 ttgcgtcttgcggggatggcgtttaat 3419321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 48161808 - 48161690
Alignment:
Q  112 ttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacg 211  Q
    |||||||||||||  || ||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||| ||| |||||||| |||||||||    
T  48161808 ttatcttcaggggctttgttaggtggttatggtgtgccgtctatatgcggcactatttgtattttg-ttcgtccatatcttgtgtcttgcagggatgacg 48161710  T
Q  212 tttaataatatttgccgatt 231  Q
    ||||||||||||||| ||||    
T  48161709 tttaataatatttgctgatt 48161690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 43482232 - 43482331
Alignment:
Q  126 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttg 225  Q
    |||||||||||||| ||||||||||||| ||||| |||| ||||||||||| |||||||||||||||  ||| | |||||||||||||||||||||||||    
T  43482232 gtttttaggtggttgtggtgtaccgtctgtatgcagcactatttgtatcttatttcgtccataccttgcgtc-tacggggatgacgtttaataatatttg 43482330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 11378866 - 11378772
Alignment:
Q  134 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccga 229  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| || ||||||||||||  ||||||||||| || ||||||||||||||||||||    
T  11378866 gtggttatggtgtaccgtttatatgcggcatcatctgtatcttatt-cgtccataccttgcgtcttgcggggttggcgtttaataatatttgccga 11378772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 35745709 - 35745481
Alignment:
Q  1 ttttattttgag-ggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttag 99  Q
    |||||||||||| ||||||||||||||||||||||||  |||||| || |||| || |||||||||  ||| |||||| | || |||| |||||| ||||    
T  35745709 ttttattttgagaggtgttctttgggggtgagtagtgacgatgggtgggggtggatgttgtgtttagtgtgtttgtttct-gttaaggtgtctgtcttag 35745611  T
Q  100 gtggtgatgtgttt---------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    ||||||||||||||         |||||||||||  | | | ||||||||||||||          |||| |||||||||||||||||||||||||||||    
T  35745610 gtggtgatgtgttttggtgggttatcttcaggggcttgtat-ggtggttatggtgt----------tgcgacaccatttgtatcttgtttcgtccatacc 35745522  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  || || ||| |||||||||||||||||||||| ||||    
T  35745521 ttgcgttttacggagatgacgtttaataatatttgctgatt 35745481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33435304 - 33435337
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtag 34  Q
    |||| |||||||||||||||||||||||||||||    
T  33435304 ttttcttttgagggtgttctttgggggtgagtag 33435337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31207248 - 31207011
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||| ||||| ||  |||||||||||||||| |||||| |    ||||||||||||||    
T  31207248 ttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgctttttttttttt---gagtctgttttagg 31207152  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  31207151 tggtgatgtgttttggtgagtttatcttcaggagtgtttttaggtggttatggtgtaccgtttatatacggcaccatttgtatcttgtttcgtccatacc 31207052  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  |||||||| ||||| ||||||||||||||||||||||    
T  31207051 ttgcgtcttgcgaggatggcgtttaataatatttgccgatt 31207011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 20138627 - 20138858
Alignment:
Q  6 ttttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtg 105  Q
    ||||||||||||||||||  |||||||||||  ||||| |||||||| ||   |||||||||||||||| |||||     ||||||||||||||||||||    
T  20138627 ttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt----ggagtctgttttaggtggtg 20138722  T
Q  106 atgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatg 195  Q
    ||||||||          |||| || ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||  |    
T  20138723 atgtgttttggtgggtttatctccatgggtgtttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcg 20138822  T
Q  196 tcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||| ||||||||||||||| ||||||    
T  20138823 tcttgcggggatggcgtttaataatatttaccgatt 20138858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12898161 - 12897925
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| ||||||||||||  ||||  |||| ||| |||   ||||| ||  | |||||||||     ||||| |||||||||    
T  12898161 ttttattttgagggtgttctttgtgggtgagtagtgacgatgaacggttgtggattccatgtttgcatggattgttttttt----ggagtttgttttagg 12898066  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12898065 tggtgatgtgttttggtgggtttatcttcaggggtgtttttaggtggtaatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatatc 12897966  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||   ||||||||||||||||||||||||||||||||||||    
T  12897965 ttgcatcttgcggggatgacgtttaataatatttgccgatt 12897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 24995280 - 24995044
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| | ||||||||||  |||||||||||||| ||   ||||||||| ||||||||||||     ||||  |||||||||    
T  24995280 ttttattttgagggtgttctttgtgcgtgagtagtgacgatgggcggtggtggataccgtgtttacaatgcttgttttttt----ggagattgttttagg 24995185  T
Q  101 tggtga----------tgtgtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    ||||||          || ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  24995184 tggtgacatgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtactgtctataagcggcaccatttgtatcttgtttcgtccatacc 24995085  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  ||||| |||||||| |||| |||||||||||| ||||    
T  24995084 ttgcgtcttacggggatggcgttcaataatatttgctgatt 24995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 37986744 - 37986508
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||| |||||||||||||| ||||||||| ||  |||||| ||||||  ||   ||||||||| |||||||||||| |     ||| |||||||||    
T  37986744 ttttatttggagggtgttctttgtgggtgagtaatgacgatgggtggtggtagataccgtgtttacaatgcttgtttttttttttttagtttgttttagg 37986645  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||    
T  37986644 tggtgatgtgttttaatgggtttatctttaggggtgtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccgtgcc 37986545  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgcc 227  Q
    ||  |||||||||||||||| ||||||||||||||||    
T  37986544 ttgcgtcttgcggggatgacatttaataatatttgcc 37986508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 22773932 - 22774053
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    |||||||||||  || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||     
T  22773932 gtttatcttcactggtgtttttagatggttatggtgtaccgtctatatgcggcaccatttgtatctagtttcgtccataccttgcgtcttgcggggatgg 22774031  T
Q  210 cgtttaataatatttgccgatt 231  Q
    ||||||||||||||||||||||    
T  22774032 cgtttaataatatttgccgatt 22774053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 32066054 - 32065934
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||     
T  32066054 gtttatcttcaggggtgtttttaggtggttatg-tgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcatcttgcggtgatgg 32065956  T
Q  210 cgtttaataatatttgccgatt 231  Q
    ||||||||||||||||||||||    
T  32065955 cgtttaataatatttgccgatt 32065934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 36631038 - 36631254
Alignment:
Q  20 tttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtgatgtgttt------ 113  Q
    ||||||||||||||||   |||||||||||||| ||   |||||||||||| |||||||||     ||||||||||||||||||||||||||||          
T  36631038 tttgggggtgagtagttacgatgggcggtggtggataccgtgtttacagtgtttgttttttt----ggagtctgttttaggtggtgatgtgttttggtgg 36631133  T
Q  114 ----atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
        ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||  ||||||| ||||||     
T  36631134 gtttatcttcaggggtgtttttaggtgattatggtgtaccgtctatatgcggcaccatttgtatcttgtttc-ttcataccttgcgtcttgcagggatgg 36631232  T
Q  210 cgtttaataatatttgccgatt 231  Q
    ||| ||||||||||| ||||||    
T  36631233 cgtataataatattttccgatt 36631254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 16457361 - 16457128
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtc-tgttttag 99  Q
    ||||||||| |||||| |||||  ||||||||||||  ||||| |||||||| ||   |||||||||||||||||||||| |     |||| | ||||||    
T  16457361 ttttattttcagggtggtctttatgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgtttttttt---ttagtctttttttag 16457265  T
Q  100 gtggtgatgtgt----------ttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatac 189  Q
    ||||||||||||          ||||| |||  ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16457264 gtggtgatgtgttttggtgcgattatcctca-aggattttttaggtggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccatac 16457166  T
Q  190 cttatgtcttgcggggatgacgtttaataatatttgcc 227  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  16457165 cttacgtcttgcagggatgacgtttaataatatttgcc 16457128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 15821266 - 15821026
Alignment:
Q  1 ttttattttgagg-gtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttag 99  Q
    ||||||||||||| ||||||||| || ||||||||||| |||| | ||| ||| |||||||||||||  || ||  ||| ||| |||| |||||| ||||    
T  15821266 ttttattttgaggagtgttcttttggagtgagtagtggcgatgagtggttgtggattttgtgtttaccttgttttgtttctgttaaggtgtctgtcttag 15821167  T
Q  100 gtggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatac 189  Q
    ||||||||||||||          |||||||||||  || || |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  15821166 gtggtgatgtgttttggtggttttatcttcaggggttttatttggtggttatggtataccgtctatatgcggcaccatttgtatcttgttccgtccatac 15821067  T
Q  190 cttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||  |||||||  ||||||||||||||||||||||| ||||    
T  15821066 cttgcgtcttgc-aggatgacgtttaataatatttgctgatt 15821026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 9519695 - 9519938
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaag---gagtctgtttt 97  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||||||||| ||   |||||||||||| || |||||| |       |||  ||||||    
T  9519695 ttttattttgagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgattttttttttttttttttgaggttgtttt 9519794  T
Q  98 aggtggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccat 187  Q
    ||||||||| ||||||          ||| ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  9519795 aggtggtgacgtgttttggtgggtttatcatcaggggtgtttttaggtggttatgatgtactgtctatatgcggcaccatttgtatcttgtttcgtccat 9519894  T
Q  188 accttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||||  ||||||  ||||||  ||||||||||||||| |||||    
T  9519895 accttgcgtcttgtagggatggtgtttaataatatttgtcgatt 9519938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 35816121 - 35815896
Alignment:
Q  12 gggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtgatgtgt 111  Q
    ||||||||||||||||||||||||| ||||||| ||| ||| ||  |||||||||| || |||||| | || |||| |||||| ||| ||||||||| ||    
T  35816121 gggtgttctttgggggtgagtagtgatgatgggtggttgtggatactgtgtttacaatgtttgtttct-gttaaggtgtctgtcttaagtggtgatgggt 35816023  T
Q  112 tt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgc 201  Q
    ||          ||||||| |||  || || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  || ||||    
T  35816022 tttggtgggtttatcttcatgggctttgtttgggggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccataccttgcgttttgc 35815923  T
Q  202 ggggatgacgtttaataatatttgccg 228  Q
    | ||||| |||||||||||||||||||    
T  35815922 gaggatggcgtttaataatatttgccg 35815896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 35821583 - 35821685
Alignment:
Q  127 tttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgc 226  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||  ||||||||| |||| |||||||||||||||||    
T  35821583 tttttaagtggttatggtgtaccgtctatatgcggcatcatttgtatcatgtttcgtccat-ccttgcgtcttgcggagatggcgtttaataatatttgc 35821681  T
Q  227 cgat 230  Q
    ||||    
T  35821682 cgat 35821685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 3584048 - 3584170
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatc-ttgtttcgtccataccttatgtcttgcggggatg 208  Q
    ||||||||| |||||  || || |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||   |||||| |||||||    
T  3584048 gtttatcttaaggggctttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatctttgtttcgttcatacctcgcgtcttgtggggatg 3584147  T
Q  209 acgtttaataatatttgccgatt 231  Q
     ||||||||||||||||| ||||    
T  3584148 gcgtttaataatatttgctgatt 3584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 27889157 - 27889239
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacctt 192  Q
    |||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  27889157 gtttatctccaggggtgtttttaggtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttcgtcaatacctt 27889239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 27947815 - 27947897
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacctt 192  Q
    |||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  27947815 gtttatctccaggggtgtttttaggtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttcgtcaatacctt 27947897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 34388892 - 34388711
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| ||||||||||||  ||| |||||||||| ||   ||||||||| |||||  ||||| ||   |||| |||||||||    
T  34388892 ttttattttgagggtgttctttgtgggtgagtagtgacgataggcggtggtggatac-gtgtttacattgctttctttttttg---gagtttgttttagg 34388797  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatctt 176  Q
    |||||||||||||          ||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  34388796 tggtgatgtgttttgctgggtttatcttcacgggtgtttttaggtggttatggtgtaccgtctatatgcagcactatttgtatctt 34388711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 41893285 - 41893052
Alignment:
Q  4 tattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgg 103  Q
    |||||| ||||||||||||| ||||||||||||  ||||| |||||||| ||   ||||||||||| |||||||||| |     |||||||||||||| |    
T  41893285 tattttcagggtgttctttgtgggtgagtagtgacgatggtcggtggtggataccgtgtttacagttcttgtttttttt-----agtctgttttaggtag 41893191  T
Q  104 tgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacctta 193  Q
    ||||||||||          ||| || |||   |||||||||||||||||||||||||||||||||| |||||||||||| || |||||| ||||||||     
T  41893190 tgatgtgttttggtggatttatcctc-gggttttttttaggtggttatggtgtaccgtctatatgcgacaccatttgtat-ttttttcgttcataccttg 41893093  T
Q  194 tg---tcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||   ||||  ||||| |||||||||||||||||| |||||    
T  41893092 tgacatcttatggggacgacgtttaataatatttgtcgatt 41893052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 13538324 - 13538417
Alignment:
Q  138 ttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||| |||||||||||||||||| ||||||||||| || |||||||||||||||  |||||| || |||| ||||||||||||||||| ||||    
T  13538324 ttatgatgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgatt 13538417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 13686150 - 13686057
Alignment:
Q  138 ttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||| |||||||||||||||||| ||||||||||| || |||||||||||||||  |||||| || |||| ||||||||||||||||| ||||    
T  13686150 ttatgatgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgatt 13686057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 9659474 - 9659534
Alignment:
Q  171 tatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  9659474 tatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 9659534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 38577522 - 38577441
Alignment:
Q  144 tgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttg 225  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||| |||  ||||||||  ||||||||||||||||||||    
T  38577522 tgtaccgtctatatgcggcatcatttgtatattgtttcgttcatacattacatcttgcggaaatgacgtttaataatatttg 38577441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 35821435 - 35821514
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgtttttt 80  Q
    ||||||||| ||||||||||||| || ||||||||| |||||||||||| |  ||  |||||||||||||||||||||||    
T  35821435 ttttattttaagggtgttctttgaggatgagtagtgatgatgggcggtgctagatactgtgtttacagtgcttgtttttt 35821514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 34866345 - 34866309
Alignment:
Q  195 gtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||||||||||||||||||||||||||||||||||||    
T  34866345 gtcttgcggggatgacgtttaataatatttgccgatt 34866309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 10837984 - 10837941
Alignment:
Q  133 ggtggttatggtgtaccgtctatatgcggcaccatttgtatctt 176  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  10837984 ggtggttatggtgtaccgtctatatgcggcacgatttgcatctt 10837941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32066181 - 32066130
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtg 52  Q
    |||||||| |||||||||||||| | ||||||||||  ||||||||||||||    
T  32066181 ttttatttggagggtgttctttgtgagtgagtagtgacgatgggcggtggtg 32066130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 22773815 - 22773861
Alignment:
Q  6 ttttgagggtgttctttgggggtgagtagtggtgatgggcggtggtg 52  Q
    |||||||||||||||||| ||||||||||||  ||||||| ||||||    
T  22773815 ttttgagggtgttctttgtgggtgagtagtgacgatgggcagtggtg 22773861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 17656606 - 17656518
Alignment:
Q  18 tctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtga 106  Q
    |||||||||||||||||||   ||| |||||| || || | || ||| ||||| | ||||||  |||||||||||||||||| ||||||    
T  17656606 tctttgggggtgagtagtgacaatgagcggtgttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtga 17656518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 30685797 - 30685573
Alignment:
Q  14 gtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtgatgtgttt 113  Q
    |||||||||| ||||| ||||||  |||||||||||||| ||   ||||||||| |||||||||||  ||   |||||||||||||||||||||||||||    
T  30685797 gtgttctttgtgggtgtgtagtgaagatgggcggtggtggataccgtgtttacattgcttgtttttgttg---gagtctgttttaggtggtgatgtgttt 30685701  T
Q  114 ----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcgg 203  Q
              ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  30685700 tggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcgg 30685601  T
Q  204 ggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||||||||||||||||||    
T  30685600 ggatgacgtttaataatatttgccgatt 30685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 24449816 - 24449584
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||||||||||||| |||| ||||||||||||  |||||||||||||| ||   |||||||||||||||||||||| ||   ||||||  ||||||    
T  24449816 ttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttgttttttttg---gagtctactttagg 24449720  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||  ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24449719 tggtgatgtgttttggtgtgtttatctctaggggtgtttttatgtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccatacc 24449620  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgcc 227  Q
    ||   |||||| |||||| ||||||||||||||||||    
T  24449619 ttgcatcttgc-gggatggcgtttaataatatttgcc 24449584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 41920652 - 41920889
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||||||||||||| |||| ||||||||||||  ||| |||||||||||||   ||||||||| |||||||||||| |    |||| |||||||||    
T  41920652 ttttattttgagggtgttttttgtgggtgagtagtgacgataggcggtggtgaataccgtgtttacattgcttgttttttttt---gagtttgttttagg 41920748  T
Q  101 tggtgatgt----------gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    ||||| |||          ||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||| |||||||| || |||||||||||||    
T  41920749 tggtggtgtattttggttggtttatcttcacgggtgtttttaggtggttacggtgtaccgtctatatgcagcacaatttgtattttatttcgtccatacc 41920848  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||| ||||||||| ||||||||||||||||||||| |||||    
T  41920849 ttacgtcttgcggagatgacgtttaataatatttgtcgatt 41920889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 46814342 - 46814121
Alignment:
Q  12 gggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtgatgtgt 111  Q
    ||||||| ||||| |||||||||||  ||||| |||| ||| ||  ||||||||||| | |||||| | || |||| |||||| ||||||||||||||||    
T  46814342 gggtgttatttggaggtgagtagtgacgatggacggttgtggatactgtgtttacagggtttgtttct-gttaaggtgtctgtcttaggtggtgatgtgt 46814244  T
Q  112 tt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgc 201  Q
    ||          |||||||||||  || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46814243 tttggtaggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttacgtcttgc 46814144  T
Q  202 ggggatgacgtttaataatattt 224  Q
    | ||||| |||||||||||||||    
T  46814143 gaggatggcgtttaataatattt 46814121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 31584809 - 31584689
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  |||||||| |||||     
T  31584809 gtttatcttcaggggtgtttttaggtggttatggtgtatcgtctatatgcggcaccatttgtatcttgtttcgt-cataccttgcgtcttgcgaggatgg 31584711  T
Q  210 cgtttaataatatttgccgatt 231  Q
     |||||||||||||||||||||    
T  31584710 tgtttaataatatttgccgatt 31584689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 5459356 - 5459587
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||| ||||||||||| ||||||||||||  |||||||||||||| ||   |||||||||||| |||||||||     ||||| ||||||| |    
T  5459356 ttttattttgatggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgattgttttttt----ggagtttgttttaag 5459451  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    | |||||||||||          |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  5459452 tagtgatgtgttttggtgagtttatcttcaggggtatttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatgttgcttcgtccatacc 5459551  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  || |||||||     ||||||||||||||||| ||||    
T  5459552 ttgcgtattgcggg-----cgtttaataatatttgctgatt 5459587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 24684358 - 24684142
Alignment:
Q  20 tttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtgatgtgttt------ 113  Q
    ||||||| |||||||||  |||||||||||||| || | |||||||||| | |||||||||     ||||| ||||||||||||||||||||||          
T  24684358 tttggggttgagtagtgacgatgggcggtggtggatatcgtgtttacagagtttgttttttt----ggagtttgttttaggtggtgatgtgttttggtgg 24684263  T
Q  114 ----atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
        ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||   |||||| |||||||    
T  24684262 gtttatcttcaggggtgtttttaggtgattatggtgtaccgtctatatgtggcaccatttgtatcttgttt-gttcataccttgcatcttgcagggatga 24684164  T
Q  210 cgtttaataatatttgccgatt 231  Q
    | | ||||||||||||||||||    
T  24684163 catataataatatttgccgatt 24684142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 46692705 - 46692519
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||| |||||||||||||| ||||||||||||  |||||||||||||  || | ||||||||||||||||||||||     ||||| |||||||||    
T  46692705 ttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgatatcgtgtttacagtgcttgttttttt----ggagtttgttttagg 46692610  T
Q  101 tggtgatgtgttt----------atcttcaggggagttttt-aggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgttt 180  Q
    |||||||||||||          ||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  46692609 tggtgatgtgttttggagggtttatcttcaggggtgttttttaggtggttatggtgtaccgtctttatgcggcaccatttttatcttgttt 46692519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 5389307 - 5389077
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||| |   ||||||||||  |||||||||||||| ||   |||||||| ||||||||||||||    ||||| |||||||||    
T  5389307 ttttattttgagggtgttctt-gtaagtgagtagtgacgatgggcggtggtggataccgtgtttacggtgcttgttttttg----ggagtttgttttagg 5389213  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||  ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  5389212 tggtgatgtgttttggttggtttatctctaggggtgtttttaggtggttatagtgtgccgtctatatgcggcaccatttgtatcttatttcgtccatacc 5389113  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  ||     ||||||| ||||||||||||||| ||||||    
T  5389112 ttgcgt-----ggggatggcgtttaataatattttccgatt 5389077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 6804866 - 6804969
Alignment:
Q  127 tttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgc 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||  ||||||||||||||| |    
T  6804866 tttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatctt-tttcgtccataccttgcgtcttgcggggatagcgtttaataatatttac 6804964  T
Q  227 cgatt 231  Q
    |||||    
T  6804965 cgatt 6804969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 7002515 - 7002619
Alignment:
Q  127 tttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgc 226  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||    
T  7002515 tttttaagtggttatggtgtaccgtttatatgcggcaccttttgtatcttgtttcgtccataccttacattttgcgaggatgacgtttaataatatttgc 7002614  T
Q  227 cgatt 231  Q
    |||||    
T  7002615 cgatt 7002619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 40216260 - 40216155
Alignment:
Q  126 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttg 225  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||   |||||||| ||||||||||||||||||||||    
T  40216260 gtttttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgattcgtccatatctggcgtcttgcgaggatgacgtttaataatatttg 40216161  T
Q  226 ccgatt 231  Q
    | ||||    
T  40216160 ctgatt 40216155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 14320658 - 14320755
Alignment:
Q  134 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||||||||||||||||| |||||||||||| | |||| |||||||||||   ||||| ||||||||||||||||||||||||||||||    
T  14320658 gtggttatggtgtaccgtctatatgcgacaccatttgtatttggttttgtccataccttgcatcttgtggggatgacgtttaataatatttgccgatt 14320755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 24659241 - 24659351
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    |||||||||||||||  || || ||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||    
T  24659241 gtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcg-----------cgtcttgcggggatga 24659329  T
Q  210 cgtttaataatatttgccgatt 231  Q
    ||||||||||||||||| ||||    
T  24659330 cgtttaataatatttgctgatt 24659351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 27031585 - 27031496
Alignment:
Q  136 ggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttg 225  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||| |||||||| |||  |||||||| ||||||||||||||||||||||    
T  27031585 ggttatggtgtaccgtatatatgcggcaccatttatatattgttccgtccatatcttgcgtcttgcgaggatgacgtttaataatatttg 27031496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 6804739 - 6804814
Alignment:
Q  5 attttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgtttttt 80  Q
    ||||| ||||||||||||| ||||||| ||||  |||||||||||||| ||  ||| |||||||||||||||||||    
T  6804739 attttcagggtgttctttgtgggtgaggagtgacgatgggcggtggtggatactgtatttacagtgcttgtttttt 6804814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 32882583 - 32882668
Alignment:
Q  23 gggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtgatgt 109  Q
    ||||||||||||||  |||||| |||| || || | |||||||||||||| | |||| ||||||||||| |||||||| ||||||||    
T  32882583 gggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcg-ttttcgtgaaggagtcagttttaggcggtgatgt 32882668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31585645 - 31585610
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtg 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31585645 ttttattttgagggtgttctttgtgggtgagtagtg 31585610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 7857847 - 7857891
Alignment:
Q  1 ttttattttgaggg-tgttctttgggggtgagtagtggtgatggg 44  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||    
T  7857847 ttttattttgaggggtgttctatgggggtgagtagtggcgatggg 7857891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 18593438 - 18593674
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||| |||| ||||||||| ||||||||||||  |||||||||||||| ||   ||||||||||||||||||||||     ||||| ||| |||||    
T  18593438 ttttatttggaggatgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttgttttttt----ggagtttgtgttagg 18593533  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  18593534 tggtgatgtgttttggcgggtttatcttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatatttatcttgtttcgtccatacc 18593633  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||   ||||||||||||||||||||||||||||||||||||    
T  18593634 ttgcatcttgcggggatgacgtttaataatatttgccgatt 18593674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7161902 - 7161663
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||| ||||||||||||||||||||||||  | |||| ||||||| |  | ||||||||||||||||||||| ||||||||||||||||||||    
T  7161902 ttttattttgatggtgttctttgggggtgagtagtgacgttgggtggtggtggaaatcgtgtttacagtgcttgttttt-gtgaaggagtctgttttagg 7161804  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    | |||||||||||          || |||||||| ||||||||||| ||||||||||||||||||||||  ||| ||||||||||| ||||||||||| |    
T  7161803 tagtgatgtgttttggtgggtttatattcaggggtgtttttaggtgattatggtgtaccgtctatatgctacactatttgtatcttatttcgtccatatc 7161704  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  |||||| ||||| ||||||||||||||||||||||||    
T  7161703 ttgcgtcttgtggggaagacgtttaataatatttgccgatt 7161663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 29087676 - 29087903
Alignment:
Q  2 tttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggt 101  Q
    |||||||||||||| |||||| |||||||||||||  |||||||||||||||||   ||||||||||||||||||||||     ||||||||||||||||    
T  29087676 tttattttgagggt-ttctttaggggtgagtagtgacgatgggcggtggtgaataccgtgtttacagtgcttgttttttt----ggagtctgttttaggt 29087770  T
Q  102 ggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacct 191  Q
    | ||||||||||          ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||      
T  29087771 gctgatgtgttttggtgggtttatcttcagggttgtttttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatac-- 29087868  T
Q  192 tatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
         ||||| |||||||||||||||||||||| ||||||    
T  29087869 -----cttgcagggatgacgtttaataatattttccgatt 29087903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 34378293 - 34378531
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| |||||||| ||   ||||||||| |||||||||||| |     ||| |||||||||    
T  34378293 ttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttaca-tgcttgtttttttttttt-agtttgttttagg 34378390  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||    
T  34378391 tggtgatgtgtttttgtgggtttatcttcaggggtgtttttagatggttatggtgtaccgtctatatgcggcaccatttgtatctcgtctcgtccatgcc 34378490  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  ||||||||| |||| |||||||||||||||| |||||    
T  34378491 ttgcgtcttgcggagatggcgtttaataatatttgtcgatt 34378531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 698678 - 698799
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||| | ||||     
T  698678 gtttatcttcaagggtgtttttaggtggttatagtgtaccgtctatatgcggcaccatttgtatcatatttcatccataccttacgtcttgcagagatgt 698777  T
Q  210 cgtttaataatatttgccgatt 231  Q
    ||||||||||||||||| ||||    
T  698778 cgtttaataatatttgctgatt 698799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 7452915 - 7453020
Alignment:
Q  126 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||  |||||||  |||||| |||||||||||||||    
T  7452915 gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgatttgtccataccttgcgtcttgcatggatgatgtttaataatatttg 7453014  T
Q  226 ccgatt 231  Q
    ||||||    
T  7453015 ccgatt 7453020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 5656862 - 5656749
Alignment:
Q  111 tttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgac 210  Q
    |||||||| ||| | ||||||||||||||||  |||||||||||||||||||| |||||||||||| |||||| ||||||||  ||||||||| |||| |    
T  5656862 tttatcttaaggtgtgtttttaggtggttatcatgtaccgtctatatgcggcatcatttgtatcttatttcgttcataccttgcgtcttgcggtgatggc 5656763  T
Q  211 gtttaataatattt 224  Q
    ||||||||||||||    
T  5656762 gtttaataatattt 5656749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 18313393 - 18313303
Alignment:
Q  141 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||||| | || ||||||||||||||||||| ||||||    
T  18313393 tggtgtaccgtctatatgcggcaccatttgcatcttgtttcatccataccttgcgtcttacaggaatgacgtttaataatatttaccgatt 18313303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 18255192 - 18255099
Alignment:
Q  138 ttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |   |||| ||||||| |||||||| ||||||||||||||    
T  18255192 ttatgatgtaccgtctatatgcggcactatttgtatcttgtttcgtctataccctgcatcttacggggataacgtttaacaatatttgccgatt 18255099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 41250944 - 41250893
Alignment:
Q  129 tttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgttt 180  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  41250944 tttacgtggttatggtgtaccgtctatatgcggcaccatttatatcttgttt 41250893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 7195113 - 7195078
Alignment:
Q  76 tttttgtgaaggagtctgttttaggtggtgatgtgt 111  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7195113 tttttgtgaaggagtctgttttaggtggtgacgtgt 7195078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 30097593 - 30097636
Alignment:
Q  67 agtgcttgttttttgtgaaggagtctgttttaggtggtgatgtgt 111  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||    
T  30097593 agtgcttgttttc-gtgaaggagtctgttttaggtggtgacgtgt 30097636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 47235893 - 47236130
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| |||||||| ||   |||||||||||||||||||||| | |||   |||||||||||    
T  47235893 ttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgtttttttttaag---tctgttttagg 47235989  T
Q  101 tggtgatgt----------gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||          |||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47235990 tggtgatgtattttggtgggtttatctccaggggtgtttttagatggttatggtataccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 47236089  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  ||||||| |||||| ||||||||||||||||| ||||    
T  47236090 ttgcgtcttgcagggatggcgtttaataatatttgctgatt 47236130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2392392 - 2392152
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||  |||||| |||| ||||||||||||  |||||||||||||| ||   ||||||||||||||| |||||| |     ||||| |||||||    
T  2392392 ttttattttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttttttttttttttttagtctattttagg 2392293  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
     ||||||||||||          || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2392292 cggtgatgtgttttggtgggtttattttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 2392193  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  |||||||||||||||||||||||||||||| ||||||    
T  2392192 ttgcgtcttgcggggatgacgtttaataatattttccgatt 2392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 19176699 - 19176938
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||||||||||||||||| |||||||||||||  |||||  ||||||| ||  ||||||||| ||||||||||||| |   |||||||||||||||    
T  19176699 ttttattttgagggtgttctttaggggtgagtagtgacgatggatggtggtggatactgtgtttactgtgcttgtttttttttt-ggagtctgttttagg 19176797  T
Q  101 tggtgatgtgttta----------tcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||| ||||||||           ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  19176798 tggttatgtgttttggtgggtttgtcttcaggggtatttttaggtcgttatggtgtaccgtctatatgcggcaccatttgtatcatgtttcgtccatact 19176897  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  ||||||| || ||||||||||||||||||||||||||    
T  19176898 ttgcgtcttgcaggaatgacgtttaataatatttgccgatt 19176938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 34475637 - 34475407
Alignment:
Q  6 ttttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtg 105  Q
    |||| ||||||||||||| ||||||||||||  |||||||||||||| ||   ||||||||| |||||||||||||     |||||||||||||||||||    
T  34475637 ttttaagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacattgcttgttttttg-----gagtctgttttaggtggtg 34475543  T
Q  106 atgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatg 195  Q
    ||||||||          |||| |||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| |  |    
T  34475542 atgtgttttggtgagtttatctccaggggtgttcttaggtggttatggtataccgtctatatggggcaccatttgtatcttgtttcgttcataccctgcg 34475443  T
Q  196 tcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34475442 tcttgcggggatgacgtttaataatatgtgccgatt 34475407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 53248096 - 53248332
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||||||| |||||||||| ||||||||||||  ||||||||||||||  |   ||||||||||||||||||||||     |||||||||||||||    
T  53248096 ttttattttgagagtgttctttgtgggtgagtagtgacgatgggcggtggtggttaccgtgtttacagtgcttgttttttt----ggagtctgttttagg 53248191  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||||||||  |||||||| ||||||||||||||   ||||||||| ||||||||||||||||||| |||||||||    
T  53248192 tggtgatgtgtttttgtggggttatcttcagggttgtttttagatggttatggtgtacaacctatatgcgacaccatttgtatcttgttttgtccatacc 53248291  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||| | ||||||||||||||||||||||||||||| |||||    
T  53248292 ttacgccttgcggggatgacgtttaataatatttgtcgatt 53248332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2394156 - 2393915
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaagg-agtctgttttag 99  Q
    ||||||||||  |||||| |||| ||||||||||||  |||||||||||||| ||   ||||||||||||||| |||||| |      ||||| ||||||    
T  2394156 ttttattttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgctttttttttttttttttagtctattttag 2394057  T
Q  100 gtggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatac 189  Q
    | ||||||||||||          || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2394056 gcggtgatgtgttttggtgggtttattttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatac 2393957  T
Q  190 cttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||  |||||||||||||||||||||||||||||| ||||||    
T  2393956 cttgcgtcttgcggggatgacgtttaataatattttccgatt 2393915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 43012570 - 43012796
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||| |||||||||||||||||| |||||||||||| ||||| ||| |||| ||   ||||||||| ||||||||||| |||||||||||||||||||     
T  43012570 ttttaatttgagggtgttctttggaggtgagtagtggcgatggacgggggtggataccgtgtttacaatgcttgttttt-gtgaaggagtctgttttaga 43012668  T
Q  101 tggtgatgt----------gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||          |||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  43012669 tggtgatgtcttttggtgggtttttcttcaggagtgtttttaggtggttatggtgtatcgtctatatgcggcaccatttgtatattgtttcgttcatacc 43012768  T
Q  191 ttatgtcttgcggggatgacgtttaataa 219  Q
    ||  |||||||  ||||||| ||||||||    
T  43012769 ttgcgtcttgc-aggatgacatttaataa 43012796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 45164050 - 45164285
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||||||||||||| ||||  ||||| |||||  ||||||||||| |||||   ||||||||| ||||||||| ||     ||||||| |||||||    
T  45164050 ttttattttgagggtgttatttgtaggtgattagtgacgatgggcggtgatgaataccgtgtttacaatgcttgtttcttt----ggagtctattttagg 45164145  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          |||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45164146 tggtgatgtgttttggtgggtttatctccagggt-gtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttagtccatacc 45164244  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||   |||||||||||| | |||||||||||||||||||||    
T  45164245 ttgcatcttgcggggataatgtttaataatatttgccgatt 45164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9583940 - 9583710
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||| ||||||||| || |||||||||  ||| |||||||||| || | |||||||| ||||||||||||| |||||||||||  |||  |    
T  9583940 ttttattttgaggatgttctttgcgg-tgagtagtgacgataggcggtggtggatatcgtgtttacggtgcttgtttttt-tgaaggagtctaatttttg 9583843  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          || |||| |||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  9583842 tggtgatgtgttttggtgggtttattttcaagggtatttttaggtggttatggtgtatcgtctatatgcggcaccatttgtatcttgtttcgtctatacc 9583743  T
Q  191 ttatgtcttgcggggatgacgtttaataatatt 223  Q
    || |||||| ||| |||| ||||||||||||||    
T  9583742 ttgtgtcttacggagatggcgtttaataatatt 9583710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 21343678 - 21343779
Alignment:
Q  130 ttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccga 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||    
T  21343678 ttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgtgtcttgccgggatgacgtttaataatatttgtcga 21343777  T
Q  230 tt 231  Q
    ||    
T  21343778 tt 21343779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 31483191 - 31483312
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||  |||||| |||||||     
T  31483191 gtttatctccaggggtgtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgttttgttcataccttgcgtcttgtggggatgg 31483290  T
Q  210 cgtttaataatatttgccgatt 231  Q
     |||||||||||||||||||||    
T  31483291 tgtttaataatatttgccgatt 31483312  T

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Target: chr3; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 30352207 - 30352110
Alignment:
Q  112 ttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  30352207 ttatcttcaggggtgtttttaggtggttatggtgtaccttctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcgggaatga 30352110  T

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Target: chr3; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 40023345 - 40023224
Alignment:
Q  104 tgatgtgtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcgg 203  Q
    ||||| |||||||||||||||  || || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |  |||||||||    
T  40023345 tgatgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcggcatcatttgtatcttgtttcgtccatacaatgcgtcttgcgg 40023246  T
Q  204 ggatgacgtttaataatatttg 225  Q
    |||||| |||||||||||||||    
T  40023245 ggatgatgtttaataatatttg 40023224  T

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Target: chr3; HSP #14
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 50305344 - 50305223
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    |||||||||||||||  || || | |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||  |||||||||| |||     
T  50305344 gtttatcttcaggggctttatttgatggttatggtgtaccgtctatatgcgacaccatttgtatcttgttccgtccataccttgcgtcttgcgggaatgg 50305245  T
Q  210 cgtttaataatatttgccgatt 231  Q
    ||||||||||||||||| ||||    
T  50305244 cgtttaataatatttgctgatt 50305223  T

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Target: chr3; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 23328237 - 23327997
Alignment:
Q  1 ttttattttgag-ggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttag 99  Q
    |||||||||||| ||||||||||||||||||||||||  |||||| ||| ||| || ||||| |||||||| |||||| | || |||  ||| || ||||    
T  23328237 ttttattttgagtggtgttctttgggggtgagtagtgacgatgggtggttgtggatattgtgcttacagtgtttgtttct-gttaagaggtccgtcttag 23328139  T
Q  100 gtggtgatgt----------gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatac 189  Q
    |||||||| |          ||||||| ||| |||  || || ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  23328138 gtggtgatatattttcgtgggtttatcctcaagggctttgtttggtggttatggtgtaccgtatatatgcggcaccatttatatcttgtttcgtccatac 23328039  T
Q  190 cttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||  || |||| |||||  ||||||||||||||||| ||||    
T  23328038 cttgcgtattgcagggatagcgtttaataatatttgctgatt 23327997  T

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Target: chr3; HSP #16
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 45399002 - 45399217
Alignment:
Q  12 gggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtgatgtgt 111  Q
    |||||||| ||||||||||||||||  |||||  | | ||| || |||||||||||||| ||  ||| ||| |||| ||| || ||||||||||||||||    
T  45399002 gggtgttcgttgggggtgagtagtgacgatggatgattgtggatattgtgtttacagtgttttgtttctgttaaggtgtccgtcttaggtggtgatgtgt 45399101  T
Q  112 ttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacg 211  Q
    ||   |    |||  | | | ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||   ||||| ||| |||| ||    
T  45399102 tttggt----gggtttatcttggtggttatggtgtaccgtctatatgcggcaccgtttgtatcttgtttcgttcatacctcgcgtctttcggagatgtcg 45399197  T
Q  212 tttaataatatttgccgatt 231  Q
    ||||||||||||||| ||||    
T  45399198 tttaataatatttgctgatt 45399217  T

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Target: chr3; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 17551275 - 17551382
Alignment:
Q  117 ttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaa 216  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |   |||||| ||||| ||||||||    
T  17551275 ttcagaggtgtttttaggtggttatggtgtacagtctatatgcggcaccatttgtattttgtttcgttcataccctgcatcttgcagggataacgtttaa 17551374  T
Q  217 taatattt 224  Q
    ||||||||    
T  17551375 taatattt 17551382  T

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Target: chr3; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 37158618 - 37158735
Alignment:
Q  113 tatcttcaggggagtttttaggtggttatggtgt-accgtct-atatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgac 210  Q
    |||||||||||| |||||||||||||||| |||| ||| | | ||||||||||||||||||||| |||||||||||||||||  |||||||||||||| |    
T  37158618 tatcttcaggggtgtttttaggtggttatagtgttaccatattatatgcggcaccatttgtatcctgtttcgtccataccttgcgtcttgcggggatggc 37158717  T
Q  211 gtttaataatatttgccga 229  Q
    |||| ||||||||||||||    
T  37158718 gttt-ataatatttgccga 37158735  T

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Target: chr3; HSP #19
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 4463831 - 4463734
Alignment:
Q  134 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||||||||||| ||||||||||||||||||||||||| | |||||||||||||  |||  |||||| |||| |||||||||||||||||||||||||    
T  4463831 gtggttatggtgcaccgtctatatgcggcaccatttgtgtgttgtttcgtccatgtcttgcgtcttgtggggttgacgtttaataatatttgccgatt 4463734  T

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Target: chr3; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 25506814 - 25506719
Alignment:
Q  136 ggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||  ||| |||  ||||||||||||||| ||||||||||||||| |||||    
T  25506814 ggttatggtgtaccgtctatatgcggcaccatttgtatattgttttgtttatatcttgggtcttgcggggatgatgtttaataatatttgtcgatt 25506719  T

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Target: chr3; HSP #21
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 50559978 - 50560070
Alignment:
Q  133 ggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttg 225  Q
    ||||||||||||| ||||||||| ||||||| | |||||||||||||||||||||| |||  || ||||| ||||||||||||||||||||||    
T  50559978 ggtggttatggtgcaccgtctatgtgcggcatcttttgtatcttgtttcgtccatatcttgcgtattgcgaggatgacgtttaataatatttg 50560070  T

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Target: chr3; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 47439284 - 47439347
Alignment:
Q  168 ttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  47439284 ttgtatcttgtttcgtccataccttatgtcttgtagggatgacgtttagtaatatttgccgatt 47439347  T

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Target: chr3; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 20611977 - 20612054
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgtttt 78  Q
    ||||||| ||||||||||||||| ||||||||||||  |||||||| ||||| ||  |||||||||||||||||||||    
T  20611977 ttttattctgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgcttgtttt 20612054  T

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Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 5556918 - 5557011
Alignment:
Q  138 ttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||||||||||| |||||||||   || |||||||||||||||||| || ||||||  || | |||  ||||||||||||||||||||||||||    
T  5556918 ttatggtgtaccatctatatgcataactatttgtatcttgtttcgttcaaaccttacatcctacggaaatgacgtttaataatatttgccgatt 5557011  T

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Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17551147 - 17551198
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtg 52  Q
    |||||||||||||||||||||||  |||||||||||  ||||||||||||||    
T  17551147 ttttattttgagggtgttctttgtcggtgagtagtgacgatgggcggtggtg 17551198  T

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Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 7105059 - 7105140
Alignment:
Q  24 ggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtga 106  Q
    |||||||||||||  |||||| ||||||| ||  ||| |||| |||||||||||| | ||||| |||||||||||||||||||    
T  7105059 ggggtgagtagtgacgatgggtggtggtggatactgtttttatagtgcttgttttct-tgaagaagtctgttttaggtggtga 7105140  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 30352322 - 30352248
Alignment:
Q  6 ttttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgtttttt 80  Q
    |||| ||||||||||||| || |||||||||  |||||| ||||||| ||   ||||||||||| ||||||||||    
T  30352322 tttttagggtgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgtttacagtacttgtttttt 30352248  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 32010030 - 32010063
Alignment:
Q  76 tttttgtgaaggagtctgttttaggtggtgatgt 109  Q
    |||| |||||||||||||||||||||||||||||    
T  32010030 ttttcgtgaaggagtctgttttaggtggtgatgt 32010063  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 40023459 - 40023346
Alignment:
Q  1 ttttattttgagggt-gttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttag 99  Q
    ||||||||||||||  ||||||| ||| |||||||||  |||||  ||| ||| ||   |||||||||||| ||  ||| ||| |||| |||||| ||||    
T  40023459 ttttattttgaggggcgttcttttgggatgagtagtgacgatggatggttgtggataccgtgtttacagtgttttgtttctgttaaggtgtctgtcttag 40023360  T
Q  100 gtggtgatgtgttt 113  Q
    ||||||||||||||    
T  40023359 gtggtgatgtgttt 40023346  T

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Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8255222 - 8255459
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||  |||||| ||  ||||||||||||||||||||| | ||   ||||||||||||||    
T  8255222 ttttattttgagggtgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgttttatttg---gagtctgttttagg 8255318  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| |||    
T  8255319 tggtgatgtgtttttgtgagtttatcttcaggagtgtttttaggtggttatgatgtaccgtctatatgcggcatcatttgtatcttgtctcgtccacacc 8255418  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||| |||||||| |||  ||||||||||||||||||||||    
T  8255419 ttatatcttgcggagatagcgtttaataatatttgccgatt 8255459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8268640 - 8268877
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||  |||||| ||  ||||||||||||||||||||| | ||   ||||||||||||||    
T  8268640 ttttattttgagggtgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgttttatttg---gagtctgttttagg 8268736  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          ||||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| |||    
T  8268737 tggtgatgtgtttttgtgagtttatcttcaggagtgtttttaggtggttatgatgtaccgtctatatgcggcatcatttgtatcttgtctcgtccacacc 8268836  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||| |||||||| |||  ||||||||||||||||||||||    
T  8268837 ttatatcttgcggagatagcgtttaataatatttgccgatt 8268877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 30964632 - 30964869
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | || |||||||||| || ||||| ||   ||||||||||||||    
T  30964632 ttttattttgagggtgttctttgtgggtgagtagtgatgatgggcggtggtgaatatcgtatttacagtgcgtgatttttttg---gagtctgttttagg 30964728  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    |||||||||||||          |||| |||| | ||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  30964729 tggtgatgtgttttggtgggtttatctccaggagtgtttttaggtggttatggtgtaccgtctatatgcaacatcatttgtatcttgtttcgtccatacc 30964828  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||  ||||||| ||||||  ||||||||||||||| |||||    
T  30964829 ttgcgtcttgcagggatggtgtttaataatatttgtcgatt 30964869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 8706030 - 8705789
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaag-----gagtctgtt 95  Q
    ||||||||||||||||||||||| ||||| ||||||  ||||||| |||||| ||  ||||||||||||||||||||||| |         |||||| ||    
T  8706030 ttttattttgagggtgttctttgtgggtgggtagtgacgatgggcagtggtggatactgtgtttacagtgcttgtttttttttttttttttgagtctatt 8705931  T
Q  96 ttaggtggtgatgtgttt------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatac 189  Q
    ||||||||||||||||||      ||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||  ||||||||||    
T  8705930 ttaggtggtgatgtgtttttgtggatcttcaagggtgtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcctgcctcgtccatac 8705831  T
Q  190 cttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||   ||||||  |||||||||||||||||||||||||||||    
T  8705830 ctcgcgtcttgaagggatgacgtttaataatatttgccgatt 8705789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 35329318 - 35329439
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||     
T  35329318 gtttatcttcatgggtatttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttacgtcttgcggggatgg 35329417  T
Q  210 cgtttaataatatttgccgatt 231  Q
    |||||| |||||||||||||||    
T  35329418 cgtttactaatatttgccgatt 35329439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 20464786 - 20465005
Alignment:
Q  2 tttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggt 101  Q
    ||||||||||||||||| |||||||||||||||||  |||||||||||||| ||   |||||||||| | ||||||||| |||||   | ||||||||||    
T  20464786 tttattttgagggtgttatttgggggtgagtagtgacgatgggcggtggtggataccgtgtttacagggtttgtttttt-tgaag---tttgttttaggt 20464881  T
Q  102 ggtgatgt----------gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacct 191  Q
    ||||||||          ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  20464882 ggtgatgtatgttggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccgtctatatacggcaccatttgtatcttgtttctttcatacct 20464981  T
Q  192 tatgtcttgcggggatgacgttta 215  Q
    |   ||||| | ||||||||||||    
T  20464982 tgcatcttgtgaggatgacgttta 20465005  T

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Target: chr4; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 27555701 - 27555579
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgc-ggggatg 208  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||  ||||||| |||||||    
T  27555701 gtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgcggcacaatttgtatcttgtttcgtccataccttgcgtcttgcgggggatg 27555602  T
Q  209 acgtttaataatatttgccgatt 231  Q
     ||||||||||||||||||||||    
T  27555601 gcgtttaataatatttgccgatt 27555579  T

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Target: chr4; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 7703018 - 7703118
Alignment:
Q  130 ttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  7703018 ttaggtggttatggtgtaccgtctatatgcggcaccatttgtatctt-tttcatccataccttgtgtcttgcggggatgacgtttaataatatttgccga 7703116  T
Q  230 tt 231  Q
    ||    
T  7703117 tt 7703118  T

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Target: chr4; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 4306033 - 4306136
Alignment:
Q  127 tttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||  ||||| |||||||||| |||||||||||||||    
T  4306033 tttttaggtggttatggtgtaccgtctatatgcggcaccatttatatctt-tttcgttcataccttgcgtcttccggggatgacatttaataatatttgc 4306131  T
Q  227 cgatt 231  Q
    |||||    
T  4306132 cgatt 4306136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30167450 - 30167212
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||||||||||||| |||||||| |||  | ||| |||||||| ||   |||||||||||||||| ||||| ||   ||||||||||||||    
T  30167450 ttttattttgagggtgttctttgtgggtgagtggtgacgttgg-cggtggtggataccgtgtttacagtgcttgatttttttg---gagtctgttttagg 30167355  T
Q  101 tggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcg--gcaccatttgtatcttgtttcgtccata 188  Q
      |||||||||||          |||||||| ||  ||||||| ||||||| |||||||||||||||     ||| ||||||||||||||||||||||||    
T  30167354 atgtgatgtgttttggtgggtttatcttcagtggtatttttagatggttatagtgtaccgtctatattttttgcatcatttgtatcttgtttcgtccata 30167255  T
Q  189 ccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||  |||||||| |||||||||||||||||||||| |||||    
T  30167254 ccttgcgtcttgcgaggatgacgtttaataatatttgtcgatt 30167212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 46698525 - 46698428
Alignment:
Q  134 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||| |  ||||||||||||||||||||||| ||||    
T  46698525 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgaccataccttgcgtctttcatggatgacgtttaataatatttgctgatt 46698428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 49528421 - 49528514
Alignment:
Q  134 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgcc 227  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||  ||||||| |||||||||    
T  49528421 gtggttttggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgttttgcggggttggtgtttaatgatatttgcc 49528514  T

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Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 2826118 - 2826213
Alignment:
Q  136 ggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||  ||||||| | |||||||||||||||||||||| ||||    
T  2826118 ggttatggtgtaccgtatatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagagatgacgtttaataatatttgctgatt 2826213  T

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Target: chr4; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 11281493 - 11281375
Alignment:
Q  112 ttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacg 211  Q
    |||||||||| || ||||||||||||||||||| |||||||||||| | ||||||||| |||| ||||||||||||| |||  |||||| || |||||||    
T  11281493 ttatcttcagaggtgtttttaggtggttatggtataccgtctatatacagcaccatttatatcatgtttcgtccatatcttgcgtcttgtggagatgacg 11281394  T
Q  212 tttaataatatttgccgat 230  Q
    || ||||||||||||||||    
T  11281393 ttcaataatatttgccgat 11281375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 36689575 - 36689454
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatga 209  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||||||  |||||||||||||| ||||||||||||||   ||||||||| ||||     
T  36689575 gtttatcttcaggggtgtttttaagtggttatagtgtaccgtctatatgcgataccatttgtatcttatttcgtccatacctcgcgtcttgcggagatgg 36689476  T
Q  210 cgtttaataatatttgccgatt 231  Q
      |||||||||||||| |||||    
T  36689475 tatttaataatatttgtcgatt 36689454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 35341097 - 35341006
Alignment:
Q  136 ggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgc--ggggatgacgtttaataatatttg 225  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  |||||||  ||||||||||||||||||||||||    
T  35341097 ggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccatacattgcgtcttgcggggggatgacgtttaataatatttg 35341006  T

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Target: chr4; HSP #17
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 31050408 - 31050315
Alignment:
Q  133 ggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgc 226  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |    ||||||||||| |||||||||||||||||||    
T  31050408 ggtggttatggtgtaccgtctatatgcgacatcatttgtatcttgtttcgtccatacatcgcatcttgcggggacgacgtttaataatatttgc 31050315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 9750116 - 9750198
Alignment:
Q  148 ccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||||||| |||||    
T  9750116 ccgtctatatgcggcaccatttgtatcttgtttcgtccaaacc-tgcgtcttgcggggatgacgtttaataatatttgtcgatt 9750198  T

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Target: chr4; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 52868859 - 52868766
Alignment:
Q  133 ggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacg-tttaataatatttg 225  Q
    |||||||||||||||||||||||| ||| |||||||||||||||  ||||| ||||||||| |||||| |  ||||||| ||||||||||||||    
T  52868859 ggtggttatggtgtaccgtctatacgcgacaccatttgtatcttaattcgttcataccttacgtcttgtgaagatgacgttttaataatatttg 52868766  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31050548 - 31050474
Alignment:
Q  1 ttttattttgaggg-tgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttg 74  Q
    |||||||||||||| ||||| ||||||||||||||||  |||||  | ||||| || |||||||||||||| |||    
T  31050548 ttttattttgaggggtgttccttgggggtgagtagtgacgatggatgatggtggatgttgtgtttacagtgtttg 31050474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 3254211 - 3254389
Alignment:
Q  59 gtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtgatgt----------gtttatcttcaggggagtttttaggtggttatggtgtac 148  Q
    |||||||| |||||||||||||     ||||||||||||||||||||||||          |||||| |||||||| |||||||||||| ||||||||||    
T  3254211 gtgtttacggtgcttgttttttt----ggagtctgttttaggtggtgatgtattttggtgggtttattttcaggggtgtttttaggtggctatggtgtac 3254306  T
Q  149 cgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
      ||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  3254307 tatctatatacggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 3254389  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10542027 - 10542262
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||| |||||| ||||||| ||||||||||||  |||||||||||||| ||   || |||| ||||||||||||||     ||||| |||||||||    
T  10542027 ttttatttggagggtattctttgtgggtgagtagtgacgatgggcggtggtggataccgtatttaaagtgcttgttttttt----ggagtttgttttagg 10542122  T
Q  101 tggtgatgt----------gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    ||||| |||          ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |    
T  10542123 tggtggtgtaatttgatgggtttatcttcaggggtgtttttaggtggttatggtgtatcgtctatatgcggcaccttttgtatcttgtttcgttcatatc 10542222  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||   |||||| |||||| || |||||||||||| ||||||    
T  10542223 ttgcatcttgc-gggatggcgcttaataatattttccgatt 10542262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3117688 - 3117922
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||  ||||||||||||| |||| ||||| |  |||| |||||||||  |   |||||||||||||||||||||| |     ||| |||||||||    
T  3117688 ttttatttatagggtgttctttgtgggtaagtagagacgatgagcggtggtggttaccgtgtttacagtgcttgttttttttttt--agtttgttttagg 3117785  T
Q  101 tggtgatgtg----------tttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacc 190  Q
    ||||||||||          ||||||||  | || |||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  3117786 tggtgatgtggtttggtaggtttatctttggaggtgtttttaggtggttatggtgtagcgtctatatgctgcaccatttgtatcttatttcgtccatacc 3117885  T
Q  191 ttatgtcttgcggggatgacgtttaataatatttgcc 227  Q
    ||| ||||||| || ||||||||||||||||||||||    
T  3117886 ttacgtcttgcaggaatgacgtttaataatatttgcc 3117922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 84 - 231
Target Start/End: Original strand, 15944274 - 15944431
Alignment:
Q  84 aaggagtctgttttaggtggtgatgtgttt----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtat 173  Q
    ||||||||||||||||||||||||||||||          || ||||||||  |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  15944274 aaggagtctgttttaggtggtgatgtgttttggtgggtttatattcaggggtatttttaggtgtttatggtgtaccgtctatatgcgacaccatttgtat 15944373  T
Q  174 cttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||| ||  |||||||||||  ||||| | |||||| ||||||||||||||||||||||    
T  15944374 cttcttctgtccataccttgcgtcttacagggatggcgtttaataatatttgccgatt 15944431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 14663272 - 14663384
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    ||||||||||||| ||||||||| ||||||||||||  |||||||||||||| || ||||||||||||||||| || ||| |   |||||||||||||||    
T  14663272 ttttattttgaggatgttctttgcgggtgagtagtgacgatgggcggtggtggatattgtgtttacagtgctttttgttttttttggagtctgttttagg 14663371  T
Q  101 tggtgatgtgttt 113  Q
    |||||||||||||    
T  14663372 tggtgatgtgttt 14663384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 33697843 - 33697789
Alignment:
Q  134 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccata 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33697843 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccata 33697789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 15132573 - 15132489
Alignment:
Q  147 accgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||  |||| ||||||||||||||||| ||||    
T  15132573 accgtctatatacggcatcatttgtatcttgttttgtccataccttacgtcttgcgatgatggcgtttaataatatttgctgatt 15132489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 14663414 - 14663480
Alignment:
Q  158 gcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttgc 226  Q
    |||||| ||||||||||||||| ||||||||||||  ||||||| || |||||||||||||||||||||    
T  14663414 gcggcagcatttgtatcttgtt-cgtccatacctttcgtcttgcagg-atgacgtttaataatatttgc 14663480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 15120416 - 15120380
Alignment:
Q  75 ttttttgtgaaggagtctgttttaggtggtgatgtgt 111  Q
    ||||||||||| |||||||||||||||||||||||||    
T  15120416 ttttttgtgaatgagtctgttttaggtggtgatgtgt 15120380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 16598967 - 16598939
Alignment:
Q  194 tgtcttgcggggatgacgtttaataatat 222  Q
    |||||||||||||||||||||||||||||    
T  16598967 tgtcttgcggggatgacgtttaataatat 16598939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5901 - 6131
Alignment:
Q  1 ttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 100  Q
    |||||||||||||||||| |||| |||||||||||| ||||||| ||||||| ||    ||||||| ||||||||||||| |||||   ||| |||||||    
T  5901 ttttattttgagggtgttttttgtgggtgagtagtgatgatgggaggtggtggataccatgtttacggtgcttgtttttt-tgaag---tct-ttttagg 5995  T
Q  101 tggtgatgtgttt-----------atcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatac 189  Q
    |||||||||||||           |||||||| || ||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |||| ||||     
T  5996 tggtgatgtgtttttgtggggtttatcttcagaggtgtttttaggtggttatgatgtaacgtctatatacggcaccatttgtatcttgtctcgttcatat 6095  T
Q  190 cttatgtcttgcggggatgacgtttaataatatttg 225  Q
    |||  |||||||||||||||||||||||||||||||    
T  6096 cttgcgtcttgcggggatgacgtttaataatatttg 6131  T

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Target: scaffold0085 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 48648 - 48767
Alignment:
Q  112 ttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacg 211  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||    
T  48648 ttatctttaagggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttagtccatatcttgtgtcttgcggggaggacg 48747  T
Q  212 tttaataatatttgccgatt 231  Q
    || |||||||||||| ||||    
T  48748 ttgaataatatttgcggatt 48767  T

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Target: scaffold0172 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 19245 - 19349
Alignment:
Q  127 tttttaggtgg-ttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatgacgtttaataatatttg 225  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||    
T  19245 tttttaggtgggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccatgcgtcttgcgaggatgacgtttaataatatttg 19344  T
Q  226 ccgat 230  Q
    |||||    
T  19345 ccgat 19349  T

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Target: scaffold0434 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 2443 - 2345
Alignment:
Q  110 gtttatcttcaggggagtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgtcttgcggggatg 208  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| |||||||    
T  2443 gtttatcttcaagggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatctgtatcttgtttcgtccataccttgcgtcttgtggggatg 2345  T

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Target: scaffold0068 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 35526 - 35473
Alignment:
Q  178 tttcgtccataccttatgtcttgcggggatgacgtttaataatatttgccgatt 231  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||    
T  35526 tttcgtccataccttacgtcttacggggatgacgttcaataatatttgccgatt 35473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 35623 - 35554
Alignment:
Q  39 gatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtggtgatgtgttt 113  Q
    ||||||| |||||| ||  |||||||||||||||||||||||     ||||||||||||||||| ||||||||||    
T  35623 gatgggcagtggtggatactgtgtttacagtgcttgtttttt-----ggagtctgttttaggtgatgatgtgttt 35554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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