View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_high_2 (Length: 778)
Name: NF15644_high_2
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_high_2 |
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| [»] scaffold0418 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 632; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 67 - 764
Target Start/End: Original strand, 7664090 - 7664782
Alignment:
| Q |
67 |
tatatatataagtcaactcagtgactcaccacaacataaaagagtaaatatatataaagacaactgaataacagactctaattaactattattatcgaaa |
166 |
Q |
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| T |
7664090 |
tatatatataagtcaactcagtgagtcaccacaacataaa-gagtaaatatatataaagacaactgaataacagactctaattaactattattattgaaa |
7664188 |
T |
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| Q |
167 |
aaacgtactctaattaactagttagcttaactctaattagattagattaagtcagcattggttagatttcgaagtattacataaataggtctactcctaa |
266 |
Q |
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| T |
7664189 |
aaacgtactctaattaactagttagcttaactctaattagattagattaagtcagcattggttagatttcgaagtattacataaataggtctactcctaa |
7664288 |
T |
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| Q |
267 |
ttatttagatacacatagttacttgcagcttaagctatatcacatcactactaattctttgtatccaatcctagctagtacaccttagttagtgtgaata |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7664289 |
ttatttagatacacatagttacttgcagcttaagctatatcacatcactactaattttttgtatccaatcctagctagtacaccttagttagtgtgaata |
7664388 |
T |
|
| Q |
367 |
tatcatttgtatataaatatgtgttataaacactaatttcattaatgaaaagaattcactttcgttcaatttgttccttcataacatggtatcaaatttt |
466 |
Q |
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| T |
7664389 |
tatcatttgtatataaatatgtgttataaacactaatttcattaatgaaaagaattcactttcgttcaatttgttccttcataatatggtatcaaatttt |
7664488 |
T |
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| Q |
467 |
ctcccctaacctttctttagttactttttctattgcggctcactctcacccccttcattgattttgcagcaaatcttattttctggtttgttcttgacat |
566 |
Q |
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| T |
7664489 |
ctcccctaacctttctttagttactttttctattgcggctcactctcacccccttcattgattttgcagcaaatcttattttctggtttgttcttgacat |
7664588 |
T |
|
| Q |
567 |
gttcaagattatattagtttctttgtgccattcctttcttgttcatgtttttcatcaagtttggtgcatttgnnnnnnnatgaatcttcgtcattttcgg |
666 |
Q |
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| T |
7664589 |
gttcaagattatattagtttctttgtgccattcatttcttgttcatgtttttcatcaagtttggtgcatttgtttttttatgaatcttcgtcattttcgg |
7664688 |
T |
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| Q |
667 |
gtttccaatcttgcaagttatcaagatttttgttatttcattaatcattctcaatttgattgattgtacgttttcatcaacaatcttcgtatctctgc |
764 |
Q |
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| T |
7664689 |
gtttccaatcttgcaagttatcaagatttttgttatttcattaatcattctcaatttgattgatt----gttttcatcaacaatcttcgtatctctgc |
7664782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 7663994 - 7664053
Alignment:
| Q |
17 |
aagtatcatagacctctttggatccgaaaaaatatatacttatttaagagtatatatata |
76 |
Q |
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| T |
7663994 |
aagtatcatagacctctttggatccgaaaaaatatatacttatttaagagtatatatata |
7664053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0418 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0418
Description:
Target: scaffold0418; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 7060 - 7001
Alignment:
| Q |
17 |
aagtatcatagacctctttggatccgaaaaaatatatacttatttaagagtatatatata |
76 |
Q |
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| T |
7060 |
aagtatcatagacctctttggatccgaaaaaatatatacttatttaagagtatatatata |
7001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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