View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15644_high_21 (Length: 250)
Name: NF15644_high_21
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_high_21 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 44734579 - 44734330
Alignment:
| Q |
1 |
aaaattgcaacaaaggtacaaatcatacaaaatttgaaggaaataaaaaaca----caccatttaggaataaaatagatccctctcaatgtaaatgtgtt |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44734579 |
aaaattgcaacaaaggtacaaatcatacaaaatttgaaggaaaaaaaaaaaaaaaacaccatttaggaataaaatagatccctctcaatgtaaatgtgtt |
44734480 |
T |
|
| Q |
97 |
aaaaggatagaaagaaagaatatgctaggtggggtcattcattactcattagtccnnnnnnnnnnnngtgtgaaaagggtccttaagtcgtttgtgatgg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44734479 |
aaaaggatagaaagaaagaatatgctaggtggggt----cattactcattagtccttttttgtttttgtgtgaaaagggtccttaagtcgtttgtgatga |
44734384 |
T |
|
| Q |
197 |
ctttaaatagcagtggcattcccgcgacaacaacagtaccttgaacacaaacaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44734383 |
ctttaaatagcagtggcattcccgcgacaacaacagaaccttgaacacaaacaa |
44734330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University