View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_high_22 (Length: 247)
Name: NF15644_high_22
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_high_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 44734083 - 44734312
Alignment:
| Q |
17 |
agttaggggaggtatgatcttgaagctgttgaagctgcaaaaattgctcatccaacaccccctggtggaagagaaaggcaaggagacgattcatgtcggc |
116 |
Q |
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| T |
44734083 |
agttaggggaggtgtgatcttgaagctgttgaagctgcaaaaattgctcatccaacaccccctggtggaagagaaaggcaaggagacgattcatgtcggc |
44734182 |
T |
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| Q |
117 |
ccacaagaggtccgcacccaaaccaagcatccacagtggaagacccgttttggctaattgatgatcaaatcaaactactaagttagttaaaacacttgaa |
216 |
Q |
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| T |
44734183 |
ccacaagaggtccgcacccaaaccaagcatccaaagtggaagacccgttttggctaattgatgatcaaatcaa---actaagttagttaaaacacttgaa |
44734279 |
T |
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| Q |
217 |
aattcaactg--acacaacaaggttaatttggt |
247 |
Q |
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| T |
44734280 |
aactcaactgacacacaacaaggttaatttggt |
44734312 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 2259724 - 2259650
Alignment:
| Q |
97 |
aggagacgattcatgtcggcccacaagaggtccgcacccaaaccaagcatccacagtggaagacccgttttggct |
171 |
Q |
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| T |
2259724 |
aggaggcggttcatgtcggcccacaagaggtccggacccaatccaagcaaccaaagagggagacccgttttggct |
2259650 |
T |
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