View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15644_high_25 (Length: 225)
Name: NF15644_high_25
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 43119801 - 43119647
Alignment:
| Q |
17 |
gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcatcaatgttttattcacgagtgtagatcatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
43119801 |
gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcataaatgttttattcacgagtgtagatcattt |
43119702 |
T |
|
| Q |
117 |
ctattacttaataaaaatggcaatatcaattcttatag-tttcttgtgtataaat |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
43119701 |
ctattacttaataaaaatggcaatatcaattcttatagtttttttgtgtataaat |
43119647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 43119575 - 43119461
Alignment:
| Q |
17 |
gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcatcaatgttttattcacgagtgtagatcatct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43119575 |
gcagagagtgaaggagagttgaaagaagaggatttaggtctggtaggtgggcacgaccatcatcattcatcaatgttttattcacgagtgtagatcatct |
43119476 |
T |
|
| Q |
117 |
ctattacttaataaa |
131 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
43119475 |
ctattacttaataaa |
43119461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 43119298 - 43119259
Alignment:
| Q |
167 |
aaatatatgcatttatatcatgtatttactacaaaactat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43119298 |
aaatatatgcatttatatcatgtatttactacaaaactat |
43119259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 43119366 - 43119322
Alignment:
| Q |
129 |
aaaaatggcaatatcaattcttatag-tttcttgtgtataaatat |
172 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
43119366 |
aaaaatggcaatatcaattcttatagtttttttgtgtataaatat |
43119322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 21917434 - 21917395
Alignment:
| Q |
167 |
aaatatatgcatttatatcatgtatttactacaaaactat |
206 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
21917434 |
aaatatgtgtatttatatcatgtatttactacaaaactat |
21917395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 15069776 - 15069748
Alignment:
| Q |
177 |
atttatatcatgtatttactacaaaacta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15069776 |
atttatatcatgtatttactacaaaacta |
15069748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 3960856 - 3960888
Alignment:
| Q |
174 |
tgcatttatatcatgtatttactacaaaactat |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
3960856 |
tgcatttatatcatgtatttaccacaaaactat |
3960888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University