View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15644_high_28 (Length: 207)

Name: NF15644_high_28
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15644_high_28
NF15644_high_28
[»] chr2 (9 HSPs)
chr2 (23-189)||(387223-387389)
chr2 (23-186)||(10524154-10524315)
chr2 (23-185)||(39338731-39338892)
chr2 (30-184)||(7874346-7874498)
chr2 (55-176)||(5254319-5254438)
chr2 (30-171)||(14106396-14106536)
chr2 (30-184)||(14405253-14405405)
chr2 (23-182)||(17116745-17116904)
chr2 (30-74)||(7460839-7460883)
[»] chr3 (17 HSPs)
chr3 (23-185)||(43012429-43012590)
chr3 (23-185)||(19176556-19176719)
chr3 (23-185)||(47235752-47235913)
chr3 (23-182)||(23328216-23328374)
chr3 (30-186)||(40023446-40023600)
chr3 (26-174)||(45163920-45164067)
chr3 (23-185)||(20611837-20611997)
chr3 (34-185)||(2392383-2392533)
chr3 (23-185)||(9583920-9584080)
chr3 (23-185)||(17551011-17551167)
chr3 (34-138)||(2394147-2394252)
chr3 (23-174)||(31482949-31483098)
chr3 (95-184)||(45398851-45398939)
chr3 (23-189)||(53247950-53248116)
chr3 (37-171)||(21342603-21342735)
chr3 (23-174)||(34475622-34475770)
chr3 (23-74)||(30352307-30352356)
[»] chr7 (18 HSPs)
chr7 (23-185)||(3867170-3867331)
chr7 (23-189)||(5860154-5860319)
chr7 (23-185)||(38306315-38306476)
chr7 (23-184)||(47325751-47325911)
chr7 (23-185)||(33435163-33435324)
chr7 (23-184)||(41089614-41089774)
chr7 (23-185)||(37795043-37795204)
chr7 (23-184)||(35745688-35745853)
chr7 (30-184)||(34390017-34390169)
chr7 (23-185)||(44353429-44353591)
chr7 (23-184)||(3419521-3419682)
chr7 (96-190)||(48161964-48162058)
chr7 (23-112)||(31972000-31972089)
chr7 (23-185)||(10244236-10244397)
chr7 (101-184)||(6584964-6585046)
chr7 (30-144)||(8745245-8745358)
chr7 (30-74)||(6585045-6585089)
chr7 (26-74)||(3419265-3419313)
[»] chr4 (9 HSPs)
chr4 (23-185)||(8255081-8255242)
chr4 (23-185)||(8268499-8268660)
chr4 (30-173)||(31050535-31050677)
chr4 (23-185)||(30964495-30964652)
chr4 (30-184)||(35341213-35341364)
chr4 (30-184)||(2825838-2825990)
chr4 (23-185)||(30167430-30167591)
chr4 (23-74)||(8706010-8706061)
chr4 (23-185)||(4305779-4305939)
[»] chr1 (13 HSPs)
chr1 (23-185)||(5389287-5389448)
chr1 (26-185)||(24449799-24449957)
chr1 (49-185)||(24684370-24684505)
chr1 (26-185)||(41920506-41920669)
chr1 (23-189)||(5459211-5459376)
chr1 (23-185)||(46692685-46692846)
chr1 (30-184)||(27031714-27031866)
chr1 (23-185)||(31585625-31585787)
chr1 (30-174)||(7857718-7857860)
chr1 (30-184)||(24658984-24659135)
chr1 (53-185)||(30685800-30685931)
chr1 (30-182)||(46814341-46814491)
chr1 (23-110)||(6764247-6764334)
[»] chr8 (15 HSPs)
chr8 (23-185)||(24995260-24995422)
chr8 (23-185)||(9519553-9519715)
chr8 (28-185)||(36630891-36631047)
chr8 (23-185)||(37986724-37986885)
chr8 (23-185)||(20138480-20138642)
chr8 (23-185)||(31207228-31207389)
chr8 (23-178)||(12898141-12898294)
chr8 (23-184)||(32066161-32066321)
chr8 (23-185)||(34388872-34389032)
chr8 (23-184)||(15821245-15821405)
chr8 (23-185)||(41893268-41893427)
chr8 (95-174)||(38577728-38577806)
chr8 (95-152)||(35816181-35816238)
chr8 (38-138)||(22773598-22773699)
chr8 (60-185)||(16457364-16457488)
[»] scaffold0343 (1 HSPs)
scaffold0343 (26-185)||(5759-5918)
[»] chr5 (7 HSPs)
chr5 (29-185)||(29087535-29087689)
chr5 (23-185)||(18593297-18593458)
chr5 (23-185)||(34378152-34378313)
chr5 (23-189)||(698411-698576)
chr5 (23-114)||(7161882-7161973)
chr5 (107-185)||(7162267-7162344)
chr5 (59-150)||(18313544-18313636)
[»] chr6 (3 HSPs)
chr6 (23-185)||(3117547-3117708)
chr6 (23-90)||(10541980-10542047)
chr6 (23-84)||(14663231-14663292)
[»] scaffold0068 (1 HSPs)
scaffold0068 (40-186)||(35655-35800)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 387389 - 387223
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcg 122  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  387389 aagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcg 387290  T
Q  123 cgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattga 189  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  387289 tgacctccgatccaccaaaagagcacaaaaacaaaagctcaaaaaccaacttgagtcaaagaattga 387223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 10524315 - 10524154
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||||||||| || ||| || ||||||||| ||  |||||||    
T  10524315 aagaacaccctccaaataaaactcccaaaccccaacacccaagctgagccacatatcgaagagcacctaaccgaaggatcatgcagctatcacaaacctc 10524216  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaat 186  Q
    |||||||||||  |||| ||||||||||| |   |||||||||||||||||||||||||||||||    
T  10524215 gcgacctccga-acaccgaaagagcacaaca--caaagcccaaaaaccaacttgagtcaaagaat 10524154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 39338731 - 39338892
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||| |||   ||||||||||||| || ||| || ||| ||||| ||  |||||||    
T  39338731 aagaacaccctcaaaataaaactcccagacctcaacacccaagctgagtcacaattcgaagagcacctaaccgaaggatcattcagctatcacaaacctc 39338830  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||||||||| ||||||||||| |   ||||||||||||||||||||||||||||||    
T  39338831 gcgacctccgatccaccgaaagagcacaaca--caaagcccaaaaaccaacttgagtcaaagaa 39338892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 7874498 - 7874346
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||||||||||| ||||  |||||||||||||||||||| | ||||| ||| ||| ||  |||||||| | || ||||| |||||| |||||||    
T  7874498 ccctcaaaataaaactccaagacttcaacacccaagctgagccacat-tcgaaaagctcctaaccaaatgaacaagtagtttccacaacctctcgacctc 7874400  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    ||||||||| || |||||||||| |||||||||||||||||||||||||||||||    
T  7874399 cgatccaccgaatgagcacaaaa-caaaagcccaaaaaccaacttgagtcaaaga 7874346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 5254438 - 5254319
Alignment:
Q  55 caacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaac 154  Q
    |||||||||| ||||||||| | ||||| ||| ||  || |||||||||||||||||||| |||||| |||||||||||||||| ||| ||||| |||||    
T  5254438 caacacccaaactgagccacat-tcgaaaagctccaaaccgaatgaacatgcagcttccacaacctctcgacctccgatccaccgaaaaagcac-aaaac 5254341  T
Q  155 aaaagcccaaaaaccaacttga 176  Q
    |||||||| |||||||||||||    
T  5254340 aaaagcccgaaaaccaacttga 5254319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 14106396 - 14106536
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||||||||||  ||||  |||||||||||||||||||| | ||| | ||| | | || |||||| ||| || |||||| |||||| |||||||    
T  14106396 ccctcaaaataaaactctcagacttcaacacccaagctgagccacat-tcgtaaagctcttaaccgaatgatcatacaacttccacaacctctcgacctc 14106494  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaa 171  Q
     |||||||| ||||||||||||||||||| ||||||||||||    
T  14106495 tgatccaccgaaagagcacaaaaacaaaaacccaaaaaccaa 14106536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14405405 - 14405253
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||||||||||| ||||  |||||||||||  ||||||| |  |||  ||| ||| ||  ||||||| ||||| ||||| |||| | |||| ||    
T  14405405 ccctcaaaataaaactcccagacttcaacacccaagtcgagccacatg-cgacaagctcctaaccaaatgaacgtgcagtttccacaaccactcgacttc 14405307  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
     |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||    
T  14405306 tgatccaccgaaagagcacaaaa-caaaagcccaaaaaccaacttgagccaaaga 14405253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 17116745 - 17116904
Alignment:
Q  23 aagaacaccctcaaaataaaa-ctcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacct 120  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||||||||| |  |||||||||||| || ||  || || | || | ||  ||||||    
T  17116745 aagaacaccctcaaaataaaaactctcagaccccaacacccaagctgagccacattacgaagagcacctaaccgatggatcaagtagatatcacaaacct 17116844  T
Q  121 cgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaa 182  Q
    |||||||||| ||| | | ||| |||||||||   |||||| |||||||||| |||||||||    
T  17116845 cgcgacctccaatctatcgaaaaagcacaaaa--caaagcctaaaaaccaacatgagtcaaa 17116904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 7460883 - 7460839
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccac 74  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||    
T  7460883 ccctcaaaataaaactcccagacttcaacacccaagctgagccac 7460839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 43012590 - 43012429
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcg 122  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| || |||||| |||||| |||||||    
T  43012590 aagaacaccctcaaattaaaactcctagaccccaacacccaagctgagccacatttcgaagagcacctgaccgaacgatcatgcaacttccacaacctcg 43012491  T
Q  123 cgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||| ||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  43012490 cgacctctgattcaccgaaagagcac-aaaacaaaagctcaaaaaccaacttgagtcaaagaa 43012429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 19176719 - 19176556
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactg--aatgaacatgcagcttccaaaacct 120  Q
    |||||||||||||||||||||| || ||||||| |||||||||||||||||| |  ||||||||||||||| |  || || ||||||||||||| |||||    
T  19176719 aagaacaccctcaaaataaaacacccagaccccgacacccaagctgagccacattacgaagagcacctgaccgaaaaggatcatgcagcttccacaacct 19176620  T
Q  121 cgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
     ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  19176619 tgcgacctccgatccaccaaaagagcac-aaatcaaaagcccaaaaaccaacttgagtcaaagaa 19176556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 47235913 - 47235752
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| |||| | ||||||||||||| || ||| || ||||||||| ||  |||||||    
T  47235913 aagaacaccctcaaaataaaactcgcagaccccaacacccaagctgaaccacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctc 47235814  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||| |||||||| |||||||| ||| || ||||||||||||||||||| ||||||||||    
T  47235813 gcgacctctgatccaccgaaagagca-aaacac-aaagcccaaaaaccaacttaagtcaaagaa 47235752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 23328216 - 23328374
Alignment:
Q  23 aagaacacc-ctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctc 121  Q
    ||||||||| |||||||||||||||| ||||  |||||||||||||||||||| | ||||| ||| ||| || ||||||||| | |||||||| ||||||    
T  23328216 aagaacaccactcaaaataaaactcccagacttcaacacccaagctgagccacat-tcgaaaagctcctaaccgaatgaacaaggagcttccacaacctc 23328314  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaa 182  Q
     |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||| ||||    
T  23328315 tcgacctccgatccaccgaaagagcac-aaaacaaaagctcaaaaaccaacttgagccaaa 23328374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 40023446 - 40023600
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||||||||||| ||||  |||||||| ||||||||||| | ||||| ||| ||| || |||||||||||||||||||| |||||| || ||||    
T  40023446 ccctcaaaataaaactcccagactacaacaccctagctgagccacat-tcgaaaagctcctaaccgaatgaacatgcagcttccacaacctcccgtcctc 40023544  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaat 186  Q
     |||||||| ||||||||| ||||||||||||||||||||||||| || ||||||||    
T  40023545 tgatccaccgaaagagcac-aaaacaaaagcccaaaaaccaacttaagccaaagaat 40023600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 45164067 - 45163920
Alignment:
Q  26 aacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctcgcg 124  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| || ||| || ||||||||| ||  |||| ||| |    
T  45164067 aacaccctcaaaataaaactcctagaccccaacacccaagctaagccacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacttcgtg 45163968  T
Q  125 acctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaactt 174  Q
    |||||||||||||| ||||||||||| |   |||||||||||||||||||    
T  45163967 acctccgatccaccgaaagagcacaaca--caaagcccaaaaaccaactt 45163920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 20611997 - 20611837
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctc 121  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||| ||| | ||||||||||||| || ||| || ||| |||||  || |||||||    
T  20611997 aagaacaccctcagaataaaactcctagaccc-aacacccaagctgagtcacatttcgaagagcacctaaccgaaggatcattcagctatcacaaacctc 20611899  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||||||||| |||||||||  ||   ||||||||||||||||||| ||||||||||    
T  20611898 gcgacctccgatccaccgaaagagcac--aacgcaaagcccaaaaaccaacttaagtcaaagaa 20611837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 2392383 - 2392533
Alignment:
Q  34 caaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctcgcgacctccga 132  Q
    ||||||||||||||||||||||||||||||||||||||||| | | ||||||  ||| || ||| || |||||||||  || ||||||||||||||||||    
T  2392383 caaaataaaactcctagaccccaacacccaagctgagccacattttgaagagatcctaaccgaaggatcatgcagctagcacaaacctcgcgacctccga 2392482  T
Q  133 tccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||| ||||||||||| |   ||||||||||||||||||| || |||||||    
T  2392483 tccaccgaaagagcacaaca--caaagcccaaaaaccaacttaagacaaagaa 2392533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 9583920 - 9584080
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcg 122  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||| |||||||   ||||||||| |||||| ||| || | |||  ||| || |||||||    
T  9583920 aagaacatcctcaaaataaaactcccagaccccaaaacccaagcagagccacaattcgaagagcgcctgaccgaaggatcgtgcgactt-cacaacctcg 9584018  T
Q  123 cgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    | |||||||||||||| ||||| ||| ||||||||||||||||||||| |||||| |||||||    
T  9584019 caacctccgatccaccgaaagatcac-aaaacaaaagcccaaaaaccatcttgagacaaagaa 9584080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 17551167 - 17551011
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||| | |||||||||||||     ||  | ||||||||| ||  |||||||    
T  17551167 aagaacaccctcaaaataaaactctcagaccccaacacccaaactgagccacatttcgaagagcacct-----aaccatcatgcagctatcacaaacctc 17551073  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||||||| || | ||||||||||| |   ||||||||||||||||||||||||||||||    
T  17551072 gcgacctccgatgcatcgaaagagcacaaca--caaagcccaaaaaccaacttgagtcaaagaa 17551011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 2394147 - 2394252
Alignment:
Q  34 caaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctcgcgacctccga 132  Q
    ||||||||||||||||||||||||||||||||||||||||| | | ||||||  ||| || ||| || |||||||||  || ||||||||||||||||||    
T  2394147 caaaataaaactcctagaccccaacacccaagctgagccacattttgaagagatcctaaccgaaggatcatgcagctagcacaaacctcgcgacctccga 2394246  T
Q  133 tccacc 138  Q
    ||||||    
T  2394247 tccacc 2394252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 31483098 - 31482949
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||| |||| |||||||  | ||||||||||| |||||||||||| | ||||||||||||| || ||| || ||||||||| ||  |||||||    
T  31483098 aagaacacccttaaaa-aaaactctcaaaccccaacacctaagctgagccacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctc 31483000  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaactt 174  Q
    ||||||||| ||||||| ||||||||||| |   |||||||||||| ||||||    
T  31482999 gcgacctccaatccaccgaaagagcacaaca--caaagcccaaaaatcaactt 31482949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 45398939 - 45398851
Alignment:
Q  95 gaatgaacatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    |||||||||||||||||||| |||||| |||||||||||||| | ||||||||  ||||||||||||||||||||||||| | |||||||    
T  45398939 gaatgaacatgcagcttccacaacctctcgacctccgatccatcgaaagagca-taaaacaaaagcccaaaaaccaacttaaatcaaaga 45398851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 53248116 - 53247950
Alignment:
Q  23 aagaacaccctcaaaataaaa-ctcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacct 120  Q
    |||||||| |||||||||||| |||  |||||||||||||||| ||||||||| | ||||||||||| | || ||| || ||| || || ||  ||||||    
T  53248116 aagaacactctcaaaataaaaactctcagaccccaacacccaaactgagccacatttcgaagagcacataaccgaaggatcatacaactatcacaaacct 53248017  T
Q  121 cgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattga 189  Q
    |||||||||| ||||||| ||||||||| || ||||||  | |||||||||||||| ||||||||||||    
T  53248016 cgcgacctccaatccaccgaaagagcac-aacacaaaa-tctaaaaaccaacttgaatcaaagaattga 53247950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 21342735 - 21342603
Alignment:
Q  37 aataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctccgatcca 136  Q
    ||||||||||  ||||  |||||||||||  ||||||| | ||||| |||  || || ||||||||| |||||||||| |||||| ||||||| ||||||    
T  21342735 aataaaactctcagacttcaacacccaagtcgagccacat-tcgaaaagcttctaaccgaatgaacaagcagcttccacaacctctcgacctctgatcca 21342637  T
Q  137 ccaaaagagcacaaaaacaaaagcccaaaaaccaa 171  Q
     | ||||||||| |||||||||||| |||||||||    
T  21342636 tcgaaagagcac-aaaacaaaagcctaaaaaccaa 21342603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 34475622 - 34475770
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctc 121  Q
    ||||||||||| ||||  ||||||  | ||||||||||| |||||||| ||| | ||||||||||||| || ||| || ||| |||||  || |||||||    
T  34475622 aagaacacccttaaaa--aaactctcataccccaacacctaagctgagtcacatttcgaagagcacctaaccgaaggatcatacagctatcacaaacctc 34475719  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaactt 174  Q
    ||||||||| ||||||| ||||||||||| |   |||||||||||| ||||||    
T  34475720 gcgacctccaatccaccgaaagagcacaaca--caaagcccaaaaatcaactt 34475770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 30352307 - 30352356
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccac 74  Q
    ||||||||||| ||||  ||||||| ||||||||||||||||||||||||||    
T  30352307 aagaacaccctaaaaa--aaactccgagaccccaacacccaagctgagccac 30352356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 3867331 - 3867170
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcg 122  Q
    ||||||||||||||||||||||| | | || ||||||||||||||||||||| ||||||||||||||||||  || || ||||||| ||||| |||||||    
T  3867331 aagaacaccctcaaaataaaacttccatactccaacacccaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagtttccataacctcg 3867232  T
Q  123 cgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||| ||||||||  |||||||| ||| ||||||||||||||||||||||||||||||||    
T  3867231 cgacctctgatccaccgcaagagcac-aaagcaaaagcccaaaaaccaacttgagtcaaagaa 3867170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 5860154 - 5860319
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||| || ||||||||| ||  |||||||    
T  5860154 aagaacaccctgaaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaactgaaggatcatgcagctatcacaaacctc 5860253  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattga 189  Q
    ||||||||||| ||||| ||||||||||| |   |||||||||||||||||||| |||||||||||||    
T  5860254 gcgacctccgaaccaccgaaagagcacaaca--caaagcccaaaaaccaacttgcgtcaaagaattga 5860319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 38306476 - 38306315
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| | || ||| || ||||||||| ||  |||||||    
T  38306476 aagaacaccctcaaaataaaactcacagaccccaacacccaagctgagccacatatcgaagagcacttaaccgaaggatcatgcagctatcacaaacctc 38306377  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||| ||| | ||||||||||| |   ||||||||||||||||||||||||||||||    
T  38306376 gcgacctccgaaccatcgaaagagcacaaca--caaagcccaaaaaccaacttgagtcaaagaa 38306315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 47325751 - 47325911
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| || ||| || ||| ||||| ||  |||||||    
T  47325751 aagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggatcattcagctatcacaaacctc 47325850  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    ||||||||||||||| | ||||||||||  |   |||||||||||||||||||||||||||||    
T  47325851 gcgacctccgatccatcgaaagagcacagca--caaagcccaaaaaccaacttgagtcaaaga 47325911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 33435324 - 33435163
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcg 122  Q
    |||||||||||||||| |||||||  ||||| ||||| ||||||||||||||   |||||||||||||||| ||| || |||| ||||| || |||||||    
T  33435324 aagaacaccctcaaaagaaaactctcagacctcaacaaccaagctgagccacaattcgaagagcacctgaccgaaggatcatgtagctttcacaacctcg 33435225  T
Q  123 cgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||||||||||| ||||||||| |||||||| ||||| |||| |||||||| |||||||    
T  33435224 cgacctccgatccaccgaaagagcac-aaaacaaatgcccacaaacgaacttgagacaaagaa 33435163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 41089614 - 41089774
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcg 122  Q
    ||||||||||||||||||||||||| |||||| ||||||||   ||||| ||   ||||||||||||| |  |||  | ||||||||||||| |||||||    
T  41089614 aagaacaccctcaaaataaaactcccagaccctaacacccatcttgagctacacttcgaagagcacctcaacgaagaatcatgcagcttccacaacctcg 41089713  T
Q  123 cgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    |||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||    
T  41089714 cgacctccgatccaccgaaagatcac-aaaacaaaagctcaaaaaccaacttgagtcaaaga 41089774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 37795204 - 37795043
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||||||||   ||||||||||||| || ||| || ||||||||| ||  |||||||    
T  37795204 aagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacagttcgaagagcacctaaccgaaggatcatgcagctatcacaaacctc 37795105  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||| ||||| ||||||||||| |   ||||||||||||||||||||| ||||||||    
T  37795104 gcgacctccgaaccaccgaaagagcacaaca--caaagcccaaaaaccaacttgactcaaagaa 37795043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 35745688 - 35745853
Alignment:
Q  23 aagaacacc-ctcaaaataaaactcctagaccccaacacccaagctgagccacc---tatcgaagagcacctgactgaatgaacatgcagcttccaaaac 118  Q
    ||||||||| |||||||||||||    ||||  ||||||||||||||||||||    ||||||| ||| ||| || |||||||||||||||||||| |||    
T  35745688 aagaacacctctcaaaataaaacagtcagacttcaacacccaagctgagccactatatatcgaaaagctcctaaccgaatgaacatgcagcttccacaac 35745787  T
Q  119 ctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    ||| | |||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  35745788 ctctccacctccaatccaccgaaagagcacaaaaacaaaagcccaaaaaccaacttgagccaaaga 35745853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 34390169 - 34390017
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||||||||||| ||||  ||||||||||| |||||||| | | ||| ||| ||| |  |||||||||||||||||||| |||||| |||||||    
T  34390169 ccctcaaaataaaactcccagactacaacacccaagttgagccacattt-gaaaagctcctaatcgaatgaacatgcagcttccacaacctctcgacctc 34390071  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||| || ||||||    
T  34390070 cgatccaccgaaagagcac-aaaataaaagcccaaaaaccaacttaagccaaaga 34390017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 44353429 - 44353591
Alignment:
Q  23 aagaacaccctcaaaa-taaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacct 120  Q
    |||||||||||||||| ||||||||| |||||||||||||||||| | | ||| | ||||||||||||| || ||| || ||||||||| ||  ||||||    
T  44353429 aagaacaccctcaaaaataaaactcccagaccccaacacccaagccgggtcacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacct 44353528  T
Q  121 cgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||||||||||||| ||||||||||| |   ||||||||||||||||| | ||||||||||    
T  44353529 cgcgacctccgatccaccgaaagagcacaaca--caaagcccaaaaaccaacataagtcaaagaa 44353591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 3419521 - 3419682
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||| ||||||||||||| | ||||||||||||||| | ||||||   |||||| |||||| || ||| || || |||||| ||  ||||||     
T  3419521 aagaacacccttaaaataaaactcccaaaccccaacacccaagttaagccacaattcgaagcgcacctaaccgaaggatcaagcagctatcacaaacctt 3419620  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    | |||||| |||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  3419621 gtgacctctgatccaccgaaagagcacagaaac-aaagcccaaaaaccaacttgagtcaaaga 3419682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 48161964 - 48162058
Alignment:
Q  96 aatgaacatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattgat 190  Q
    |||||||| ||| |||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||| ||||    
T  48161964 aatgaacaagcaacttccacaacctctcgacctctgatccaccaaaagagcacaaaaacaaaagtccaaaaatcaatttgagccaaagaactgat 48162058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 31972000 - 31972089
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttc 112  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||| || ||| || |||||| ||||    
T  31972000 aagaacaccctccaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggatcatgcaccttc 31972089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 10244397 - 10244236
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    |||| ||||||| || ||||| ||| |||||| |||||||||||||||||||   || |||||||||| || ||| || |||||| || ||  |||||||    
T  10244397 aagaccaccctccaactaaaaatcccagacccaaacacccaagctgagccacaattcaaagagcacctaaccgaaggatcatgcaactatcacaaacctc 10244298  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||| ||||  ||||||||||| |   |||| |||||||| ||||||||||||||||    
T  10244297 gcgacctccgaaccactgaaagagcacaaca--caaaggccaaaaactaacttgagtcaaagaa 10244236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 6585046 - 6584964
Alignment:
Q  101 acatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    |||||||| ||||| |||||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||||    
T  6585046 acatgcaggttccacaacctctcaacctccgatccaccgaaagagcac-aaaacaaaagcccaaaaaccaacttaagccaaaga 6584964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 8745358 - 8745245
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||| ||||||| || |   |||||| |||||||||||| |  |||| ||| |||  ||||| || ||||||||||||| |||||| |||||||    
T  8745358 ccctcaaaattaaactcccagtcttgaacaccaaagctgagccacatc-cgaaaagctcctatctgaaagatcatgcagcttccacaacctctcgacctc 8745260  T
Q  130 cgatccaccaaaaga 144  Q
    ||||||||| |||||    
T  8745259 cgatccaccgaaaga 8745245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 6585089 - 6585045
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccac 74  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||    
T  6585089 ccctcaaaataaaactcccagacttcaacacccaagctgagccac 6585045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 3419265 - 3419313
Alignment:
Q  26 aacaccctcaaaataaaactcctagaccccaacacccaagctgagccac 74  Q
    |||||||| ||||||||||||| | ||||||||||||||| | ||||||    
T  3419265 aacacccttaaaataaaactcccaaaccccaacacccaagttaagccac 3419313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 8255242 - 8255081
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||| |  |||||||||||| |||||  || || |||||| ||  |||||||    
T  8255242 aagaacaccctcaaaataaaactcacagaccctaacacccaagctgagccacattacgaagagcacctaactgatggatcaagcagctatcacaaacctc 8255143  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||    
T  8255142 gcgacctccgatccaccgaaagagcacaaaa--caaagcccaaaaaccaacttgagtcaaagaa 8255081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 8268660 - 8268499
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||| |  |||||||||||| |||||  || || |||||| ||  |||||||    
T  8268660 aagaacaccctcaaaataaaactcacagaccctaacacccaagctgagccacattacgaagagcacctaactgatggatcaagcagctatcacaaacctc 8268561  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||    
T  8268560 gcgacctccgatccaccgaaagagcacaaaa--caaagcccaaaaaccaacttgagtcaaagaa 8268499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 31050535 - 31050677
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||||||||  | ||||  ||||||||||||| ||||||  |||||| ||| ||| || |||||||||||||||||||| |||||| |||||||    
T  31050535 ccctcaaaataaaacagccagacttcaacacccaagcttagccaca-atcgaaaagctcctaaccgaatgaacatgcagcttccacaacctctcgacctc 31050633  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaact 173  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  31050634 cgatccactgaaagagcacaaaaacaaaagcccaaaaaccaact 31050677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 30964652 - 30964495
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctc 121  Q
    ||||||||||||||||||||||||| ||  ||    |||||||| | ||||| | ||||||||||||| || |||||| |||||||||  || |||||||    
T  30964652 aagaacaccctcaaaataaaactcccagtacc----acccaagcagggccacatttcgaagagcacctaaccgaatgatcatgcagctatcacaaacctc 30964557  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  30964556 gcgacctccgaaccaccaaaagagcac-aacacaaaa-cccaaaaaccaacttgagtcaaagaa 30964495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 35341213 - 35341364
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||||||||||| | ||  ||||||| || ||||||||| | ||||| ||| | | ||||||||||||||||||||||| |||||| ||| |||    
T  35341213 ccctcaaaataaaactcccaaacttcaacaccaaa-ctgagccacat-tcgaaaagctcataactgaatgaacatgcagcttccacaacctctcgaactc 35341310  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||    
T  35341311 cgatccaccgaaagagcac-aaaacaaaaggccaaaaaccaacttgagccaaaga 35341364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 2825990 - 2825838
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||||||||||| | ||  |||||||||| |||| |||||| ||||| ||| ||| || |||||||||||||||||||| ||||||  ||||||    
T  2825990 ccctcaaaataaaactcccaaacttcaacacccaaactgaaccacct-tcgaaaagctcctaaccgaatgaacatgcagcttccacaacctctagacctc 2825892  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    ||||||||| |||||| || |||| ||||||||||||||||  ||||| ||||||    
T  2825891 cgatccaccgaaagagtac-aaaataaaagcccaaaaaccacattgagccaaaga 2825838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 30167430 - 30167591
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||| | ||||||||||||||| || ||||| | ||||||||| | | || ||| |  ||||||||| ||  |||||||    
T  30167430 aagaacaccctcaaaataaaactcccataccccaacacccaagttgggccacatttcgaagagcgcttaaccgaagggtcatgcagctatcataaacctc 30167529  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||  ||||| ||||||||||| |   ||| |||||||| |||||||||||||||||    
T  30167530 gcgacctccggaccaccgaaagagcacaaca--caaaccccaaaaatcaacttgagtcaaagaa 30167591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 8706010 - 8706061
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccac 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8706010 aagaacaccctcaaaataaaactcttagaccccaacacccaagctgagccac 8706061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 4305939 - 4305779
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    |||| |||||| ||||||||||||| | |||| || ||||||| |||||||| | ||||||||||||| || ||| || ||||||| | ||  ||||||     
T  4305939 aagatcaccctgaaaataaaactcccaaacccaaatacccaagttgagccacat-tcgaagagcacctcaccgaaggatcatgcagttatcacaaacctt 4305841  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||| |  ||||||||||||||||| |   |||||| ||||||||||||||| |||||||    
T  4305840 gcgacctctggaccaccaaaagagcacaaca--caaagcctaaaaaccaacttgagacaaagaa 4305779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 5389287 - 5389448
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctc 121  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | || ||| || |||| ||||  || |||||||    
T  5389287 aagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacatatcgaagagcacttaaccgaaggaccatgtagctaacacaaacctc 5389386  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||| ||||| ||||||||||| |   ||||||||||||| ||||||||||||||||    
T  5389387 gcgacctccgaaccaccgaaagagcacaaca--caaagcccaaaaacaaacttgagtcaaagaa 5389448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 24449799 - 24449957
Alignment:
Q  26 aacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctcgcg 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| || ||| || |||||| || ||  ||||||||||    
T  24449799 aacaccctcaaaataaaactcctagaccccaacacccaagctgagccgcatttcgaagagcacctaaccgaaggatcatgcaactatcacaaacctcgcg 24449898  T
Q  125 acctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||||||||||||||||||||| |   ||| ||||||||||||||| || |||||||    
T  24449899 acctccgatccaccaaaagagcacaaca--caaatcccaaaaaccaacttaagacaaagaa 24449957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 24684370 - 24684505
Alignment:
Q  49 agaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcac 148  Q
    ||||||| ||| ||||| |||||||| | |||||||||||||||| ||| || |||||| |||||| ||||||||||||||||||||||| |||||||||    
T  24684370 agaccccgacatccaagttgagccacatttcgaagagcacctgaccgaaggatcatgcatcttccacaacctcgcgacctccgatccaccgaaagagcac 24684469  T
Q  149 aaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
     |||||||||||||||||||||||| |||||||||||    
T  24684470 -aaaacaaaagcccaaaaaccaactagagtcaaagaa 24684505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 41920669 - 41920506
Alignment:
Q  26 aacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactga-----atgaacatgcagct-tccaaaacc 119  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |   ||||||||||| |||||     | || ||||||||| ||  |||||    
T  41920669 aacaccctcaaaataaaactccaagaccccaacacccaagctgagccacatgatgaagagcacctaactgaaggttaggatcatgcagctatcacaaacc 41920570  T
Q  120 tcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||||||||||| ||||||||||| |   ||||||||||| ||||||||||||||||||    
T  41920569 tcgcgacctccgatccaccgaaagagcacaaca--caaagcccaaaatccaacttgagtcaaagaa 41920506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 5459376 - 5459211
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||||||| | || |||||||||| |||||| || ||||||||| ||  |||||||    
T  5459376 aagaacaccatcaaaataaaacttccagaccccaacacccaagctgagccacatttcaaagagcacctaactgaaggatcatgcagctatcacaaacctc 5459277  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattga 189  Q
    || |||||||| ||||  ||||||||||| |   |||||||||||| |||||||| ||||| ||||||    
T  5459276 gcaacctccgaaccactgaaagagcacaaca--caaagcccaaaaatcaacttgaatcaaataattga 5459211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 46692685 - 46692846
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    |||||||||||| |||||||||| | |||||||||||||||||||||||||| | ||||||||||| | || | | ||  |||||||| ||  |||||||    
T  46692685 aagaacaccctccaaataaaacttccagaccccaacacccaagctgagccacatttcgaagagcacttaaccggaggataatgcagctatcacaaacctc 46692784  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||| ||||| ||||||||||| |   |||||||||||||||||||||| |||||||    
T  46692785 gcgacctccgaaccaccgaaagagcacaaca--caaagcccaaaaaccaacttgagccaaagaa 46692846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 27031714 - 27031866
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||||||||||| ||||  ||||| |||| ||||||||| | ||||| ||| | | || |||||||||||||||||||| |||||| | |||||    
T  27031714 ccctcaaaataaaactcccagacttcaacatccaaactgagccacat-tcgaaaagctcttaaccgaatgaacatgcagcttccacaacctctcaacctc 27031812  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    ||||||||| ||||||||| ||||||||| ||| |||||||||||||| ||||||    
T  27031813 cgatccaccgaaagagcac-aaaacaaaatccctaaaaccaacttgagccaaaga 27031866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 31585625 - 31585787
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagacccc-aacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacct 120  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||| |||||| | ||||||||||||| ||  || || ||| |||||  || ||||||    
T  31585625 aagaacaccctcaaaataaaactctcagacccccaacacccaagcttagccacatttcgaagagcacctaaccaaaggatcatacagctatcacaaacct 31585724  T
Q  121 cgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||||||| ||||| ||| ||||||| |   ||||||||||||||||||||||||||||||    
T  31585725 cgcgacctccgacccaccgaaatagcacaacac--aaagcccaaaaaccaacttgagtcaaagaa 31585787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 7857860 - 7857718
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||||||||||| ||||  |||||||||| ||||||||| | || || ||| ||| || ||||| ||| |||||||||| |||||| ||||| |    
T  7857860 ccctcaaaataaaactcccagacttcaacacccaaactgagccacatttcaaa-agctcctaaccgaatggacaagcagcttccacaacctctcgaccac 7857762  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaactt 174  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||    
T  7857761 cgatccaccgaaagagcac-aaaacaaaaggccaaaaaccaactt 7857718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 24659135 - 24658984
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    |||||||||||||||||| ||||   ||| |||| |||||||||| | ||||| |||  || || |||||||||||  ||||||| |||||| |||||||    
T  24659135 ccctcaaaataaaactcccagactt-aactcccaggctgagccacat-tcgaaaagcttctaaccgaatgaacatgatgcttccacaacctctcgacctc 24659038  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||| || ||||||    
T  24659037 cgatccaccgaaagagcac-aaaaccaaagcccaaaaaccaacttcagccaaaga 24658984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 30685800 - 30685931
Alignment:
Q  53 cccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctcgcgacctccgatccaccaaaagagcacaaa 151  Q
    |||||||||||||||||||||| |||| | |||||||| ||  || || |||||||||  || |||||||||||||||||| ||||| |||||||||||     
T  30685800 cccaacacccaagctgagccacatatcaaggagcacctaaccaaaggatcatgcagctatcacaaacctcgcgacctccgaaccaccgaaagagcacaac 30685899  T
Q  152 aacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |   ||||||||||| ||||||||||||||||||    
T  30685900 a--caaagcccaaaagccaacttgagtcaaagaa 30685931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 46814341 - 46814491
Alignment:
Q  30 ccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacctc 129  Q
    ||||| |||||||||||| | ||  ||||||||| || ||||||| | ||||| ||| ||| |  |||||||| |||||||||   |||||| |||| ||    
T  46814341 ccctcgaaataaaactcccatacttcaacacccacgccgagccacat-tcgaaaagctcctaatcgaatgaacttgcagcttctgcaacctctcgacatc 46814439  T
Q  130 cgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaa 182  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||    
T  46814440 cgatccaccgaaagagcac-aaaacaaaagccaaaaaaccaacttgagccaaa 46814491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 6764247 - 6764334
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct 110  Q
    ||||||| ||| ||||||||||||| ||||||||  | ||||| |||||||| | ||||||||||||| || ||| || |||||||||    
T  6764247 aagaacatcctgaaaataaaactcccagaccccagtatccaagttgagccacatttcgaagagcacctaaccgaaggaccatgcagct 6764334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 24995260 - 24995422
Alignment:
Q  23 aagaacaccctcaaaataaaactcctaga-ccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacct 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||||| || ||| || ||||||||| ||  ||||||    
T  24995260 aagaacaccctcaaaataaaactcctagacccccaacacccaagctgagccatatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacct 24995359  T
Q  121 cgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||| || ||||  ||||||||||| |   ||||||||||||||||||||||||||||||    
T  24995360 cgcgacctctgacccactgaaagagcacaaca--caaagcccaaaaaccaacttgagtcaaagaa 24995422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 9519715 - 9519553
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagacccc-aacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacct 120  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||||||  | ||||||||||||| || |||||| ||||||||| ||  |||| |    
T  9519715 aagaacaccctcaaaataaaactctcagacccccaacacccaagctgagccatatttcgaagagcacctaaccgaatgatcatgcagctatcacaaactt 9519616  T
Q  121 cgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||| |||||||| ||||| ||||||||||| |   ||||||||||||||||||||||||||||||    
T  9519615 cgcaacctccgacccaccgaaagagcacaaca--caaagcccaaaaaccaacttgagtcaaagaa 9519553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 36631047 - 36630891
Alignment:
Q  28 caccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacc 127  Q
    ||||| |||| |||||| |  ||||||| ||| ||||| |||||||| | |||||||||||||||| ||| || ||||||||| ||| ||||||||||||    
T  36631047 cacccccaaactaaaacacgcagacccccacatccaagttgagccacatttcgaagagcacctgaccgaaggatcatgcagctcccacaacctcgcgacc 36630948  T
Q  128 tccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||| | ||||||||| ||||||||||||||||||| |||| |||||||||||    
T  36630947 tccgatccatcgaaagagcac-aaaacaaaagcccaaaaacaaactagagtcaaagaa 36630891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 37986724 - 37986885
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    |||||||||||| |||||||||||| |||||  ||||||||||||||||||| | ||||||||||||| || ||| || || |||||| ||  |||||||    
T  37986724 aagaacaccctccaaataaaactcccagaccgaaacacccaagctgagccacatttcgaagagcacctaaccgaaggatcaggcagctatcacaaacctc 37986823  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||| ||||| ||||||||||| |   ||||| ||||||||||||||||||||||||    
T  37986824 gcgacctccgaaccaccgaaagagcacaaca--caaagcacaaaaaccaacttgagtcaaagaa 37986885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 20138642 - 20138480
Alignment:
Q  23 aagaacaccctcaaaa-taaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacct 120  Q
    |||||||||||||||| ||||||||| |||||||||||||||||| | | ||| | ||||||||||||| || ||| || ||||||||| ||  ||||||    
T  20138642 aagaacaccctcaaaaataaaactcccagaccccaacacccaagccgggtcacatttcgaagagcacctaaccgaaggatcatgcagctatcacaaacct 20138543  T
Q  121 cgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||||||||||||| ||||||||||| |   ||||||||||||||||| | ||||||||||    
T  20138542 cgcgacctccgatccaccgaaagagcacaaca--caaagcccaaaaaccaacataagtcaaagaa 20138480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 31207228 - 31207389
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||| | || ||||||||||||||||||||| | ||||||||||||| || ||| |  ||| ||||| ||  |||||||    
T  31207228 aagaacaccctcaaaataaaactcccatactccaacacccaagctgagccacatttcgaagagcacctaaccgaagggtcattcagctatcacaaacctc 31207327  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||||||||| ||| ||||||| |   ||| ||||||| ||||||||||||||||||    
T  31207328 gcgacctccgatccaccgaaaaagcacaaca--caaatcccaaaatccaacttgagtcaaagaa 31207389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 12898141 - 12898294
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||||| || ||| || || |||||| ||  |||||||    
T  12898141 aagaacaccctcaaaataaaactctaagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggatca-gcagctatcacaaacctc 12898239  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagt 178  Q
    ||||||||||| ||| | ||||||||||| |   ||||||| |||||||||||||||    
T  12898240 gcgacctccgaaccatcgaaagagcacaaca--caaagccccaaaaccaacttgagt 12898294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 32066161 - 32066321
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||| |||| | || ||||||| || || |||||| ||||||||| ||  |||||||    
T  32066161 aagaacaccctccaaataaaactctcagaccccaacacccaagctgaaccacatttcaaagagcatctaaccgaatgatcatgcagctatcacaaacctc 32066260  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
    || ||||| || ||||| ||||||||||| |   |||||||||||||||||| ||||||||||    
T  32066261 gcaacctctgaaccaccgaaagagcacaaca--caaagcccaaaaaccaactggagtcaaaga 32066321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 34388872 - 34389032
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||||| |   ||||| ||||| |||||| || ||   |||| ||  |||||||    
T  34388872 aagaacaccctcaaaataaaactctcataccccaacacccaagctgagccacatgatgaagaacacctaactgaaggatca-ctagctatcacaaacctc 34388970  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
     |||||| ||||||||| ||| ||||||| |   ||||||||||||||||||||||||||||||    
T  34388971 acgacctacgatccaccgaaatagcacaaca--caaagcccaaaaaccaacttgagtcaaagaa 34389032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 15821245 - 15821405
Alignment:
Q  23 aagaacac-cctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctc 121  Q
    |||||||| ||||||||||||||||| ||||  ||||| || ||||||||||| | ||||| ||| ||| ||  |||||||| |  | ||||| ||||||    
T  15821245 aagaacactcctcaaaataaaactcccagacttcaacatccgagctgagccacat-tcgaaaagctcctaaccaaatgaacaagttgtttccacaacctc 15821343  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaaga 184  Q
     ||||||| |||||||  ||||||||||||| ||||||||||||||||||| | |||||||||    
T  15821344 tcgacctctgatccactgaaagagcacaaaa-caaaagcccaaaaaccaacataagtcaaaga 15821405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 41893268 - 41893427
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||||||| |||||| |||||| ||||| |||||||||||||||||||| | |||||||| |||| |  ||| || ||||||||| ||  ||||||     
T  41893268 aagaacaccctgaaaatagaactcccagacctcaacacccaagctgagccacatttcgaagagtacct-atagaaggatcatgcagctatcacaaacctt 41893366  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||  | ||||||||||||||||| |   |||||||||||| ||||||||| |||||||    
T  41893367 gcgacctcttaaccaccaaaagagcacaaca--caaagcccaaaaa-caacttgagacaaagaa 41893427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 38577728 - 38577806
Alignment:
Q  95 gaatgaacatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaactt 174  Q
    |||||||||||||||||||| || ||| ||||||| |||||||| ||||||||| |||||||||| ||||||||||||||    
T  38577728 gaatgaacatgcagcttccacaaactctcgacctctgatccaccgaaagagcac-aaaacaaaagtccaaaaaccaactt 38577806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 35816181 - 35816238
Alignment:
Q  95 gaatgaacatgcagcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaa 152  Q
    |||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||    
T  35816181 gaatgaacatgcagcttccacaatctctcaacctccgatccaccaaaagagcacaaaa 35816238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 22773699 - 22773598
Alignment:
Q  38 ataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctcgcgacctccgatcca 136  Q
    |||||||||| |||||||||||||||| ||||||||| | ||||||||||||| || ||| || |||| || | ||  |||||||| ||||||| |||||    
T  22773699 ataaaactcccagaccccaacacccaaactgagccacatttcgaagagcacctaacagaaggatcatgtagatatcacaaacctcgtgacctccaatcca 22773600  T
Q  137 cc 138  Q
    ||    
T  22773599 cc 22773598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 185
Target Start/End: Original strand, 16457364 - 16457488
Alignment:
Q  60 cccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaa 158  Q
    ||||||||||||||| | || |||||||||| ||   | || |||||||||  || ||||||| |||| ||||| ||||| ||||||||||| |   |||    
T  16457364 cccaagctgagccacatttcaaagagcacctaaccacaagatcatgcagctatcacaaacctcacgacatccgaaccaccgaaagagcacaacac--aaa 16457461  T
Q  159 gcccaaaaaccaacttgagtcaaagaa 185  Q
    ||| |||||||||||||||||||||||    
T  16457462 gcctaaaaaccaacttgagtcaaagaa 16457488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 5918 - 5759
Alignment:
Q  26 aacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctcgcg 124  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||| |  |||||||||||| || ||| || || | |||| ||  |||||| |||    
T  5918 aacaccctcaaaataaaactcccagatcccaacacccaagctgagccacattacgaagagcacctaaccgaaggatcaagtagctatcacaaaccttgcg 5819  T
Q  125 acctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||||    
T  5818 acctccgatctaccgaaagagcacaaaaac-aaagcccaaaaaccaacctgagtcaaagaa 5759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 29087689 - 29087535
Alignment:
Q  29 accctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttccaaaacctcgcgacct 128  Q
    |||||||||||||| |||| ||||||||||| | ||| |||||||| || |||||||||||||||  || || |||| |||| ||| |||||||||||||    
T  29087689 accctcaaaataaagctcccagaccccaacatctaagttgagccacata-cgaagagcacctgaccaaaggatcatggagctaccataacctcgcgacct 29087591  T
Q  129 ccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||||| ||||||||| |||||||||||||| ||||||| |||| ||||||||    
T  29087590 ccgatccaccgaaagagcac-aaaacaaaagcccagaaaccaatttgattcaaagaa 29087535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 18593458 - 18593297
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    ||||||| |||| |||||||||||| ||||||||||||||||| |||||||| | ||||||| ||||| || ||| || |||||| || ||  ||| |||    
T  18593458 aagaacatcctccaaataaaactcccagaccccaacacccaagttgagccacatttcgaagaacacctaaccgaaggatcatgcacctatcacaaatctc 18593359  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||| ||||| ||||||||||| |    |||||||||||||||||||||||||||||    
T  18593358 gcgacctccgaaccaccgaaagagcacaaca--ctaagcccaaaaaccaacttgagtcaaagaa 18593297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 34378313 - 34378152
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca-aaacctc 121  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||||| |  ||||||||| || || ||| || ||  || ||  || |||||||    
T  34378313 aagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacattacgaagagcatctaaccgaaggatcaaacaactatcacaaacctc 34378214  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||||| |||||| |||||||||||||   |||||||||||||||||||| |||||||||    
T  34378213 gcgacctccggtccaccgaaagagcacaaaa--caaagcccaaaaaccaacttgtgtcaaagaa 34378152  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 698576 - 698411
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    |||||||||||| |||||||||||  |||||||||||||||||||||||||| | || |||||||||| || ||| ||  |||||||| ||  |||||||    
T  698576 aagaacaccctccaaataaaactctcagaccccaacacccaagctgagccacatttcaaagagcacctaaccgaaggattatgcagctatcacaaacctc 698477  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaattga 189  Q
    || ||||| || ||||  |||||| |||| |   ||||||||||||||||||||||||||||| ||||    
T  698476 gcaacctctgaaccacagaaagagtacaaca--caaagcccaaaaaccaacttgagtcaaagagttga 698411  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 7161882 - 7161973
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagcttcca 114  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||  || || |||||||||||||    
T  7161882 aagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagaacacctgaccaaaggatcatgcagcttcca 7161973  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 7162267 - 7162344
Alignment:
Q  107 agcttccaaaacctcgcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    |||||||| ||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  7162267 agcttccataacctcgcgacctccgatccatcgaaagagcac-aaaacaaaaacccaaaaaccaacttgagtcaaagaa 7162344  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 18313544 - 18313636
Alignment:
Q  59 acccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctcgcgacctccgatccaccaaaagagcacaa 150  Q
    |||||| || |||||| | ||||||||||||| |  |||||| ||||||||| ||  |||||||||||||| | ||||||| |||||| ||||    
T  18313544 acccaaactaagccacatttcgaagagcacctaaacgaatgatcatgcagctatcacaaacctcgcgaccttcaatccaccgaaagagtacaa 18313636  T

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Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 3117708 - 3117547
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctc 121  Q
    |||||||||||  |||||||||||| ||||||||||||||||| |||||||| | ||||||||||| | |  ||| || |||||| || ||  |||||||    
T  3117708 aagaacaccctataaataaaactcccagaccccaacacccaagttgagccacatttcgaagagcacataatcgaaggatcatgcaactatcacaaacctc 3117609  T
Q  122 gcgacctccgatccaccaaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaa 185  Q
    ||||||||||| ||||  ||||||||||| |   ||||||||||||||||||||||||||||||    
T  3117608 gcgacctccgaaccacataaagagcacaaca--caaagcccaaaaaccaacttgagtcaaagaa 3117547  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 10542047 - 10541980
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaagagcacct 90  Q
    ||||| |||||| |||||||||| | |||||||||||||||||||||||||| | |||||||||||||    
T  10542047 aagaataccctccaaataaaacttccagaccccaacacccaagctgagccacatttcgaagagcacct 10541980  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 14663292 - 14663231
Alignment:
Q  23 aagaacaccctcaaaataaaactcctagaccccaacacccaagctgagccacctatcgaaga 84  Q
    ||||||| ||||||||||||||||| | ||||||||| |||||| ||||||| | |||||||    
T  14663292 aagaacatcctcaaaataaaactcccaaaccccaacatccaagccgagccacatttcgaaga 14663231  T

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Target: scaffold0068 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 35655 - 35800
Alignment:
Q  40 aaaactcctagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgcagct-tccaaaacctcgcgacctccgatccacc 138  Q
    |||||||| | |||||||||||||||||||||| | | ||||||||||||| || ||  || ||||||||| ||  ||| |||| |||||||||||||||    
T  35655 aaaactcccacaccccaacacccaagctgagcctcatttcgaagagcacctaaccgatggatcatgcagctatcacaaatctcgtgacctccgatccacc 35754  T
Q  139 aaaagagcacaaaaacaaaagcccaaaaaccaacttgagtcaaagaat 186  Q
     ||||||||||| |   ||||||||||||||||||| |||||||||||    
T  35755 gaaagagcacaaca--taaagcccaaaaaccaacttaagtcaaagaat 35800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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