View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_high_4 (Length: 666)
Name: NF15644_high_4
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_high_4 |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 252 - 652
Target Start/End: Complemental strand, 63924 - 63526
Alignment:
| Q |
252 |
tttgatcgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggttttgtggtgagttatgattcttttaagggtttggtt |
351 |
Q |
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| T |
63924 |
tttgattgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggtttagtggtgagttatgattcttttaagggtttggtt |
63825 |
T |
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| Q |
352 |
ttggggttttgtagagagggtttggttgaggatgttgattggggtgttaggagtgtggttaggatggtgggatttgttgttaagatggggatgtggagac |
451 |
Q |
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| T |
63824 |
ttggggttttgtagagagggtttggttgaggatgttgattggggtgttaggagtatggttgggatggtgggatttgttgtta----ggggatgtggagtc |
63729 |
T |
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| Q |
452 |
aaattgttaagtttgttgttgtttctagtgatgtttgtgtttctcttgatacgattttggattgtcatgatgattgaaaaatatgatattggtgg---nn |
548 |
Q |
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| T |
63728 |
aaattgttaagtttg-tgttgtttctagtgatgtttgtgtttctcttgatacgattttggatggtcatgatgattgaaaaatatgatgttggtggttttt |
63630 |
T |
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| Q |
549 |
nnnnnnncaatgtacattattatatagccaataacatgttttgattaatttgattggaaggaaaaagaataattattcggctatatcgtaagtgtgatct |
648 |
Q |
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| T |
63629 |
tttttttcaatgtacattattatatagccaataacatgttttgattaatttgattggaaggaaaaagaataattattcggctatatcgtaagtgtgatct |
63530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 64567 - 64454
Alignment:
| Q |
51 |
aagactataacccaactcaaccctttctgtctctccctcatcaccaaattcacccaatcccacaacttcacctacattgacacctttcttaaaaccctcc |
150 |
Q |
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| T |
64567 |
aagactataacccaactcaaccctt-ctgtctctccctcttcaccaaattcacccaatcccacaacttc------------acctttcttaaaaccctct |
64481 |
T |
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| Q |
151 |
ctaaaccctactctttcacccaagatt |
177 |
Q |
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| T |
64480 |
ctaaaccctactctttcacccaagatt |
64454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 180 - 514
Target Start/End: Original strand, 30300928 - 30301259
Alignment:
| Q |
180 |
ggttttggaagatgtgatgatgaggaatgggtgttatcctcacgagagttcttatcaacatattttgtatgatttgatcgatttgaagagattttaggag |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| | ||||||| |||||| ||||||||||||||| ||||| |
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| T |
30300928 |
ggttttggaagatgtgatgatgaggaatgggtgttatcctaatgagagttcttatcagcatgtgttgtatggtttgattgatttgaagagatttgaggag |
30301027 |
T |
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| Q |
280 |
gctaaaggggttgttgagaagatggttttgaaaggttttgtggtgagttatgattcttttaagggtttggttttggggttttgtagagagggtttggttg |
379 |
Q |
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| T |
30301028 |
gctaaaggggttgttgagaagatggttttgaagggttttgtggtgagttatgattcttttaagggtttggttttggggttttgtagagaagggttgattg |
30301127 |
T |
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| Q |
380 |
aggatgttgattggggtgttaggagtgtggttaggatggtgggatttgttgttaagatggggatgtggagacaaattgttaagtttgttgttgtttctag |
479 |
Q |
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|||| ||||||||||||||||||||| ||||||||| |||| |||||| || ||||||||||||||||| |||||||| | | ||||||||||||| |
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| T |
30301128 |
aggaagttgattggggtgttaggagtatggttagga---tgggttttgttcctaggatggggatgtggagaccaattgttagatgtattgttgtttctag |
30301224 |
T |
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| Q |
480 |
tgatgtttgtgtttctcttgatacgattttggatt |
514 |
Q |
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| T |
30301225 |
agatgttagtgtttcttttgataagattttggatt |
30301259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 26 - 175
Target Start/End: Original strand, 30300296 - 30300444
Alignment:
| Q |
26 |
atcttccatctctactcttcccgcaaagactataacccaactcaaccctttctgtctctccctcatcaccaaattcacccaatcccacaacttcacctac |
125 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
30300296 |
atcttccatctctactcttctcgcaaagactacaacccaactcaacc-tttctgtatctccctcatcaccaaattcactcaatcccacaatttcacctac |
30300394 |
T |
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| Q |
126 |
attgacacctttcttaaaaccctccctaaaccctactctttcacccaaga |
175 |
Q |
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| T |
30300395 |
attgacacccttcttaaaaccctccctaaaccctactctttcactcaaga |
30300444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 460 - 546
Target Start/End: Original strand, 30302187 - 30302273
Alignment:
| Q |
460 |
aagtttgttgttgtttctagtgatgtttgtgtttctcttgatacgattttggattgtcatgatgattgaaaaatatgatattggtgg |
546 |
Q |
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|||| |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
30302187 |
aagtgtgttgttgctgttagtgatgtttgtgtttctcttgatacgattttggatagtcatgatgattgaaaaatatgatgttggtgg |
30302273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 8445043 - 8445143
Alignment:
| Q |
51 |
aagactataacccaactcaaccctttctgtctctccctcatcaccaaattcacccaatcccacaacttcacctacattgacacctttcttaaaaccctcc |
150 |
Q |
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| T |
8445043 |
aagactataacccaacccaaccctt-ctgtctctccctcgtcaccaaattcacccaatcccacaacttcacctacattgacacctttcttaaaaccctcc |
8445141 |
T |
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| Q |
151 |
ct |
152 |
Q |
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|| |
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| T |
8445142 |
ct |
8445143 |
T |
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