View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_high_5 (Length: 659)
Name: NF15644_high_5
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_high_5 |
 | |
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| [»] scaffold0231 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 14 - 641
Target Start/End: Original strand, 35521357 - 35521995
Alignment:
| Q |
14 |
gatgaacagcgaagaaacacaatcgccagaagaaaagcggaagtgagctaatctgataccatattgaatatcagagaaagagg-aattgagatgtaattc |
112 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35521357 |
gatgaacatcgaagaaacacaatcgccagaagaaaagcggaagtgagctaatctgataccatattgaatatcagagaaagagggaattgagatgtaattc |
35521456 |
T |
|
| Q |
113 |
tcattttattgttgtgtaaaaatctgatttacatagagaaagagga-------attgacaaagttataaaactattgaagtactgtaac------aaaac |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||| ||||| |
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| T |
35521457 |
tcattttattgttgtgtaaaaatctgatttacatagagagctattattgatttatatacaaagttataaaactattgaagtactgtaactgatgtaaaac |
35521556 |
T |
|
| Q |
200 |
taataactagggaagaactaacagacctctctactataaatgagataaattagcatctttattaggtaataacgagtttacacgcctagggttcacttca |
299 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521557 |
taataactagggaagaactaaccgacctctctactataaatgagataaattagcatctttattaggtaataacgagtttacacgcctagggttcacttca |
35521656 |
T |
|
| Q |
300 |
ctacacttattgattccaaatgttcttgttactactattagtcacaaatgcacaatgttgcattctagagggtacaaaaaataacctgtacattgtatac |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521657 |
ctacacttattgattccaaatgttcttgttactgctattagtcacaaatgcacaatgttgcattctagagggtacaaaaaataacctgtacattgtatac |
35521756 |
T |
|
| Q |
400 |
ctttgcaaaaaataatacaannnnnnnnnnncttttgactgtataatttaaataatactgatcttaaaacctaaaatgtttgatcttgataggatgatta |
499 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35521757 |
ctttgcaaaaaataatacaa--tttttttttcttttgactgtataatttaaataatactgatctt-aaacctaaaatgtttgatcttgataggatgatta |
35521853 |
T |
|
| Q |
500 |
ttgtgaccacgtcgatttacttggtgcaggaaacccaaccccctctttttgcactagtaccgtctcaaaatcgatacatattaagtaatctttggtcaat |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
35521854 |
ttgtgaccacgtcgatttacttggtgcaggaaacccaaccccctctttttgcactagtaccgtctcaaaatcgatacaaattaaggaatctttggtcaat |
35521953 |
T |
|
| Q |
600 |
atataaatcctattatgttaccttaattactattgtgtattc |
641 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521954 |
atataaatcctattatgttaccttaattactattgtgtattc |
35521995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 75 - 270
Target Start/End: Original strand, 35516733 - 35516943
Alignment:
| Q |
75 |
tattgaatatcagagaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagag-------aaagaggaattgacaaa |
167 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||| |
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| T |
35516733 |
tattgaatatcagagaaaggggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagagagctgctattgatttatatacaaa |
35516832 |
T |
|
| Q |
168 |
gttataaaactattgaagtactgtaac------aaaactaataactagggaagaactaacagacctctctactata--aatgagataaattagcatcttt |
259 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
35516833 |
gttataaaactattgaagtactataactgatgtaaaactaataactagggaagaactaacagacttctctactataataatgagataaattagcatcttt |
35516932 |
T |
|
| Q |
260 |
attaggtaata |
270 |
Q |
| |
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||||| ||||| |
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|
| T |
35516933 |
attagataata |
35516943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 5e-64; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 74 - 270
Target Start/End: Complemental strand, 33769300 - 33769091
Alignment:
| Q |
74 |
atattgaatatcagagaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagag-------aaagaggaattgacaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||| |
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|
| T |
33769300 |
atattgaatatcagagaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagagagctgctattgatttatatacaa |
33769201 |
T |
|
| Q |
167 |
agttataaaactattgaagtactgtaac------aaaactaataactagggaagaactaacagacctctctactataaatgagataaattagcatcttta |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33769200 |
agttataaaactattgaagtactgtaactgatgtaaaactaataactaggggagaactaacagacttctctactataaatgagataaattagcatcttta |
33769101 |
T |
|
| Q |
261 |
ttaggtaata |
270 |
Q |
| |
|
|||||||||| |
|
|
| T |
33769100 |
ttaggtaata |
33769091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 24236004 - 24236118
Alignment:
| Q |
163 |
acaaagttataaaactattgaagtactgtaac------aaaactaataactagggaagaactaacagacctctctactataaatgagataaattagcatc |
256 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24236004 |
acaaagttataaaactattgaagtattgtaactcatgtaaaactaataactagggaagaactaacagacttctctactataaatgagataaattagcatc |
24236103 |
T |
|
| Q |
257 |
tttattaggtaataa |
271 |
Q |
| |
|
||||||||||||||| |
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|
| T |
24236104 |
tttattaggtaataa |
24236118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 33765381 - 33765311
Alignment:
| Q |
80 |
aatatcagagaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagag |
150 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33765381 |
aatatcagggaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagag |
33765311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 33765297 - 33765233
Alignment:
| Q |
195 |
aaaactaataactagggaagaactaacagacctctctactataaatgagataaattagcatcttt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33765297 |
aaaactaataactagggaagaactaacagacttctctactataaatgagataaattagcatcttt |
33765233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 30723972 - 30724055
Alignment:
| Q |
42 |
gaagaaaagcggaagtgagctaatc-tgataccatattgaatatcagagaaagaggaattgagatgtaattctcattttattgt |
124 |
Q |
| |
|
|||||||||| ||||||||| || | ||||||||| || |||||||||| | | ||||||||||||||||||||||||||||| |
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|
| T |
30723972 |
gaagaaaagccgaagtgagcgaaacatgataccatcttaaatatcagagcagcaagaattgagatgtaattctcattttattgt |
30724055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 24235962 - 24236003
Alignment:
| Q |
80 |
aatatcagagaaagaggaattgagatgtaattctcattttat |
121 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24235962 |
aatatcatagaaagaggaattgagatgtaattctcattttat |
24236003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 2679 - 2793
Alignment:
| Q |
163 |
acaaagttataaaactattgaagtactgtaac------aaaactaataactagggaagaactaacagacctctctactataaatgagataaattagcatc |
256 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
2679 |
acaaagttataaaactattgaagtactataactgatgtaaaactaacaactagggaagaactaacagacttctctactataaatgggataaattagcatc |
2778 |
T |
|
| Q |
257 |
tttattaggtaataa |
271 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2779 |
tttattaggtaataa |
2793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 2637 - 2678
Alignment:
| Q |
80 |
aatatcagagaaagaggaattgagatgtaattctcattttat |
121 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2637 |
aatatcatagaaagaggaattgagatgtaattctcattttat |
2678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 76 - 270
Target Start/End: Original strand, 12471930 - 12472137
Alignment:
| Q |
76 |
attgaatatcagagaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagag-------aaagaggaattgacaaag |
168 |
Q |
| |
|
||||||| || |||||| | ||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| | || || |||||| |
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|
| T |
12471930 |
attgaatgtctgagaaataagaaatgagatgtaattcttattttattgttatgtaaaaatctgatttacatagagagctgctattgatttatatacaaag |
12472029 |
T |
|
| Q |
169 |
ttataaaactattgaagtactgtaac-----aaaactaataactagggaagaa-ctaacagacctctctactataaatgagataaattagcatctttatt |
262 |
Q |
| |
|
|| |||||||||||||||| |||||| ||||||||||||||| || || ||||| || ||||||||||||||||||||||||||||| |||||| |
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|
| T |
12472030 |
ttctaaaactattgaagtattgtaactgacataaactaataactaggaaaaaagctaactgatttctctactataaatgagataaattagcatatttatt |
12472129 |
T |
|
| Q |
263 |
aggtaata |
270 |
Q |
| |
|
| |||||| |
|
|
| T |
12472130 |
aagtaata |
12472137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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