View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15644_high_7 (Length: 518)

Name: NF15644_high_7
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15644_high_7
NF15644_high_7
[»] chr5 (10 HSPs)
chr5 (10-502)||(3201845-3202337)
chr5 (10-502)||(3207819-3208311)
chr5 (103-492)||(3215765-3216154)
chr5 (230-481)||(3178861-3179112)
chr5 (230-481)||(3239728-3239979)
chr5 (371-477)||(3225685-3225791)
chr5 (230-477)||(3220700-3220947)
chr5 (371-478)||(3219285-3219392)
chr5 (230-477)||(3230933-3231180)
chr5 (371-502)||(3224185-3224317)
[»] chr4 (1 HSPs)
chr4 (392-459)||(42446000-42446067)
[»] chr1 (2 HSPs)
chr1 (428-479)||(139415-139466)
chr1 (428-479)||(164815-164866)
[»] chr2 (1 HSPs)
chr2 (428-479)||(18605174-18605225)
[»] chr8 (3 HSPs)
chr8 (428-477)||(268757-268806)
chr8 (428-477)||(647115-647164)
chr8 (428-477)||(832850-832899)


Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 10 - 502
Target Start/End: Complemental strand, 3202337 - 3201845
Alignment:
Q  10 caaaggtcaagcagttaaagatgctggtggtgctgctatgatacttttgaatggtgaagatgaagctttcaatccaattgctgatgttcatgttctacct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3202337 caaaggtcaagcagttaaagatgctggtggtgctgctatgatacttttgaatggtgaagatgaagctttcaatccaattgctgatgttcatgttctacct 3202238  T
Q  110 gctgtgcatgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacaattttattcaaaggaactgttattg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3202237 gctgtgcatgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacaattttattcaaaggaactgttattg 3202138  T
Q  210 gaaatccactttcccctcaagttgcttcattttcatcaagaggtccaagcaaaacaagccctggaattctgaaaccagacataattggacctggattgaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3202137 gaaatccactttcccctcaagttgcttcattttcatcaagaggtccaagcaaaacaagccctggaattctgaaaccagacataattggacctggattgaa 3202038  T
Q  310 cattctagcaggatggcctatatcattagacaatagtacatcatcgtttaacataattgcaggtacctcgatgtcttgtcctcatcttagtggcattgct 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3202037 cattctagcaggatggcctatatcattagacaatagtacatcatcgtttaacataattgcaggtacctcgatgtcttgtcctcatcttagtggcattgct 3201938  T
Q  410 gctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatcagcaatcatgacgactgctaatcatgttaatctccatggtaag 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3201937 gctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatcagcaatcatgacgactgctaatcatgttaatctccatggtaag 3201845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 502
Target Start/End: Complemental strand, 3208311 - 3207819
Alignment:
Q  10 caaaggtcaagcagttaaagatgctggtggtgctgctatgatacttttgaatggtgaagatgaagctttcaatccaattgctgatgttcatgttctacct 109  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  3208311 caaaggtcaagcagttaaagatgccggtggtgctgctatgatacttttgaacagtgaaggtgaagatttcaatccaattgctgatgttcatgttctacct 3208212  T
Q  110 gctgtgcatgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacaattttattcaaaggaactgttattg 209  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  3208211 gctgtgcatgtaagttactctgctggtttaaacatccaagattatataaattcaacttccacaccaatggccacaattttattcaaaggaactgtcattg 3208112  T
Q  210 gaaatccactttcccctcaagttgcttcattttcatcaagaggtccaagcaaaacaagccctggaattctgaaaccagacataattggacctggattgaa 309  Q
    |||||||   | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||    
T  3208111 gaaatcccaatgcccctcaagttgcttcattttcatcaagaggtccaagcaaagcaagccctggaattctgaaaccagacatacttgggcctggattgaa 3208012  T
Q  310 cattctagcaggatggcctatatcattagacaatagtacatcatcgtttaacataattgcaggtacctcgatgtcttgtcctcatcttagtggcattgct 409  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  3208011 cattcttgcgggatggcctatatcattagacaatagtacatcatcgtttaacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgct 3207912  T
Q  410 gctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatcagcaatcatgacgactgctaatcatgttaatctccatggtaag 502  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| |||||||| || ||||||    
T  3207911 gctttgttgaaaaactctcatccagattggtctccagctgctataaaatccgcaatcatgacaactgctaatcaggttaatcttcaaggtaag 3207819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 103 - 492
Target Start/End: Complemental strand, 3216154 - 3215765
Alignment:
Q  103 tctacctgctgtgcatgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacaattttattcaaaggaact 202  Q
    |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  3216154 tctacctgctgcacttgtaagttactctgctggtttatccatcaaagattatataaactcaacttcaacaccaatggccacgattttattcaatggaact 3216055  T
Q  203 gttattggaaatccactttcccctcaagttgcttcattttcatcaagaggtccaagcaaaacaagccctggaattctgaaaccagacataattggacctg 302  Q
    ||||||||||||||   | |||||||||| ||||  |||||||||||||| |||| | ||  |||||| |||||||||||||||||||||||||||||||    
T  3216054 gttattggaaatcccaatgcccctcaagtagcttacttttcatcaagaggaccaaaccaagaaagcccaggaattctgaaaccagacataattggacctg 3215955  T
Q  303 gattgaacattctagcaggatggcctatatcattagacaatagtacatcatcgtttaacataattgcaggtacctcgatgtcttgtcctcatcttagtgg 402  Q
    || ||||||||||||||| ||||| | ||||||| ||||| | || | || | |  ||||| ||| |||||||||| ||||||||||| ||||| |||||    
T  3215954 gagtgaacattctagcagcatggcatgtatcattggacaacaatataccaccatacaacatcatttcaggtacctcaatgtcttgtccacatctcagtgg 3215855  T
Q  403 cattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatcagcaatcatgacgactgctaatcatgttaatct 492  Q
     ||||||||| ||||||||||||| |||||||||||||| || || ||||||||||||||||||||||| |||||| || | ||||||||    
T  3215854 aattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaatcagcaatcatgacaactgcttatgaagttaatct 3215765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 481
Target Start/End: Original strand, 3178861 - 3179112
Alignment:
Q  230 gttgcttcattttcatcaagaggtccaagcaaaacaagccctggaattctgaaaccagacataattggacctggattgaacattctagcaggatggccta 329  Q
    |||| ||||||||| |||||||| |||||| ||  ||| ||||||||||| ||||||||||| ||||| || ||  | ||||||||||| | |||||||     
T  3178861 gttgtttcattttcttcaagaggaccaagccaacaaagtcctggaattcttaaaccagacatcattggtccaggtgtcaacattctagctgcatggcctg 3178960  T
Q  330 tatcattagacaatagtacatcatcgtttaacataattgcaggtacctcgatgtcttgtcctcatcttagtggcattgctgctttgttgaaaaactcgca 429  Q
    | ||| | ||||| |  ||  || | |||  ||| | | | || || || ||||||||||||||||| |||||||||||||| ||| | ||||  || ||    
T  3178961 tttcaattgacaacaagactccaccttttgccattacttctggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctca 3179060  T
Q  430 tccagattggtcaccagcagctataaaatcagcaatcatgacgactgctaat 481  Q
    ||| |||||||| ||||| || |||||||||||||||||||| |||||||||    
T  3179061 tcctgattggtcgccagctgcaataaaatcagcaatcatgacaactgctaat 3179112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 481
Target Start/End: Complemental strand, 3239979 - 3239728
Alignment:
Q  230 gttgcttcattttcatcaagaggtccaagcaaaacaagccctggaattctgaaaccagacataattggacctggattgaacattctagcaggatggccta 329  Q
    |||| ||||||||| |||||||| |||||| ||  ||| ||||||||||| ||||||||||| ||||| || ||  | ||||||||||| | |||||||     
T  3239979 gttgtttcattttcttcaagaggaccaagccaacaaagtcctggaattcttaaaccagacatcattggtccaggtgtcaacattctagctgcatggcctg 3239880  T
Q  330 tatcattagacaatagtacatcatcgtttaacataattgcaggtacctcgatgtcttgtcctcatcttagtggcattgctgctttgttgaaaaactcgca 429  Q
    | ||| | ||||| |  ||  || | |||  ||| | | | || || || ||||||||||||||||| |||||||||||||| ||| | ||||  || ||    
T  3239879 tttcaattgacaacaagactccaccttttgccattacttctggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctca 3239780  T
Q  430 tccagattggtcaccagcagctataaaatcagcaatcatgacgactgctaat 481  Q
    ||| |||||||| ||||| || |||||||||||||||||||| |||||||||    
T  3239779 tcctgattggtcgccagctgcaataaaatcagcaatcatgacaactgctaat 3239728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 371 - 477
Target Start/End: Complemental strand, 3225791 - 3225685
Alignment:
Q  371 ggtacctcgatgtcttgtcctcatcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatcagcaatcatga 470  Q
    ||||| ||||||||||||||||| || ||||| |||||||| ||| | ||||  || ||||| |||||||||||||| ||||||||||| ||||||||||    
T  3225791 ggtacttcgatgtcttgtcctcacctaagtggtattgctgcattgatcaaaagttctcatcctgattggtcaccagccgctataaaatcggcaatcatga 3225692  T
Q  471 cgactgc 477  Q
    | |||||    
T  3225691 caactgc 3225685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 477
Target Start/End: Complemental strand, 3220947 - 3220700
Alignment:
Q  230 gttgcttcattttcatcaagaggtccaagcaaaacaagccctggaattctgaaaccagacataattggacctggattgaacattctagcaggatggccta 329  Q
    |||| ||||||||| |||||||| |||||| ||  ||| ||||||||||| ||||||||||| ||||| || ||  | ||||||||||| | ||||  |     
T  3220947 gttgtttcattttcttcaagaggaccaagccaagaaagtcctggaattcttaaaccagacatcattggtccaggtgtcaacattctagctgcatggggtg 3220848  T
Q  330 tatcattagacaatagtacatcatcgtttaacataattgcaggtacctcgatgtcttgtcctcatcttagtggcattgctgctttgttgaaaaactcgca 429  Q
    | ||  ||||||| |  |   || | ||||||||  || | ||||| || |||||||||||||| || ||||| ||| |||| ||| | ||||  || ||    
T  3220847 tttctgtagacaacaaaattccagcttttaacattgtttccggtacttcaatgtcttgtcctcacctaagtggtatttctgcattgatcaaaagttctca 3220748  T
Q  430 tccagattggtcaccagcagctataaaatcagcaatcatgacgactgc 477  Q
     || |||||||||||||| ||||||||||||||||||||||| |||||    
T  3220747 ccctgattggtcaccagccgctataaaatcagcaatcatgacaactgc 3220700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 371 - 478
Target Start/End: Complemental strand, 3219392 - 3219285
Alignment:
Q  371 ggtacctcgatgtcttgtcctcatcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatcagcaatcatga 470  Q
    |||||||| |||||||||  |||||| | ||| ||||| ||  |||||||||| || ||||||||| |||| || || ||||||||||||||||||||||    
T  3219392 ggtacctcaatgtcttgttttcatctcaatggaattgcagcactgttgaaaaattctcatccagatcggtctcccgctgctataaaatcagcaatcatga 3219293  T
Q  471 cgactgct 478  Q
    | ||||||    
T  3219292 caactgct 3219285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 230 - 477
Target Start/End: Complemental strand, 3231180 - 3230933
Alignment:
Q  230 gttgcttcattttcatcaagaggtccaagcaaaacaagccctggaattctgaaaccagacataattggacctggattgaacattctagcaggatggccta 329  Q
    |||| ||||||||| |||||||| |||||| ||  ||| || |||||||| ||||||||||| ||||| || ||  | ||||||||||| | ||||  |     
T  3231180 gttgtttcattttcttcaagaggaccaagccaagaaagtccaggaattcttaaaccagacatcattggtccaggtgtcaacattctagctgcatggggtg 3231081  T
Q  330 tatcattagacaatagtacatcatcgtttaacataattgcaggtacctcgatgtcttgtcctcatcttagtggcattgctgctttgttgaaaaactcgca 429  Q
    | ||  ||||||| |  |   || | ||||||||  || | ||||| || |||||||||||||| || ||||| |||||||| ||| | ||||  || ||    
T  3231080 tttctgtagacaacaaaattccagcttttaacattgtttccggtacttcaatgtcttgtcctcacctaagtggtattgctgcattgatcaaaagttctca 3230981  T
Q  430 tccagattggtcaccagcagctataaaatcagcaatcatgacgactgc 477  Q
     || |||||||| ||||| ||||||||||||||||||||||| |||||    
T  3230980 ccctgattggtcgccagccgctataaaatcagcaatcatgacaactgc 3230933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 502
Target Start/End: Complemental strand, 3224317 - 3224185
Alignment:
Q  371 ggtacctcgatgtcttgtcctcatcttagtggcattgctgctttgttga-aaaactcgcatccagattggtcaccagcagctataaaatcagcaatcatg 469  Q
    |||||||| ||||||||| ||||||| ||||| ||||| |   |||||| ||||||  |||||||||||||| |   | ||||||||||| |||||||||    
T  3224317 ggtacctcaatgtcttgttctcatctcagtggaattgcagtactgttgataaaactatcatccagattggtctctgtctgctataaaatcggcaatcatg 3224218  T
Q  470 acgactgctaatcatgttaatctccatggtaag 502  Q
    || |||||  || | |||||||| || ||||||    
T  3224217 acaactgcatatgaggttaatcttcaaggtaag 3224185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 459
Target Start/End: Original strand, 42446000 - 42446067
Alignment:
Q  392 catcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatc 459  Q
    ||||||||||||||||| |||||| | |||| ||| ||||| ||||||||||||||||| ||||||||    
T  42446000 catcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc 42446067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 479
Target Start/End: Complemental strand, 139466 - 139415
Alignment:
Q  428 catccagattggtcaccagcagctataaaatcagcaatcatgacgactgcta 479  Q
    ||||||||||||||||| |||||||||||||| || |||||||| |||||||    
T  139466 catccagattggtcacctgcagctataaaatccgctatcatgacaactgcta 139415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 479
Target Start/End: Complemental strand, 164866 - 164815
Alignment:
Q  428 catccagattggtcaccagcagctataaaatcagcaatcatgacgactgcta 479  Q
    ||||||||||||||||| ||| |||||||||| || |||||||| |||||||    
T  164866 catccagattggtcacctgcatctataaaatccgctatcatgacaactgcta 164815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 18605174 - 18605225
Alignment:
Q  428 catccagattggtcaccagcagctataaaatcagcaatcatgacgactgcta 479  Q
    ||||||||||||||||| |||||||| ||||| || |||||||| |||||||    
T  18605174 catccagattggtcacctgcagctatcaaatctgctatcatgacaactgcta 18605225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 477
Target Start/End: Original strand, 268757 - 268806
Alignment:
Q  428 catccagattggtcaccagcagctataaaatcagcaatcatgacgactgc 477  Q
    ||||||||||||||||| |||||||| ||||| || |||||||| |||||    
T  268757 catccagattggtcacctgcagctatcaaatctgccatcatgaccactgc 268806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 477
Target Start/End: Complemental strand, 647164 - 647115
Alignment:
Q  428 catccagattggtcaccagcagctataaaatcagcaatcatgacgactgc 477  Q
    ||||||||||||||||| |||||||| ||||| || |||||||| |||||    
T  647164 catccagattggtcacctgcagctatcaaatctgccatcatgaccactgc 647115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 477
Target Start/End: Complemental strand, 832899 - 832850
Alignment:
Q  428 catccagattggtcaccagcagctataaaatcagcaatcatgacgactgc 477  Q
    ||||||||||||||||| |||||||| ||||| || |||||||| |||||    
T  832899 catccagattggtcacctgcagctatcaaatctgccatcatgaccactgc 832850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University