View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15644_low_1 (Length: 790)

Name: NF15644_low_1
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15644_low_1
NF15644_low_1
[»] chr7 (1 HSPs)
chr7 (1-772)||(5468412-5469183)
[»] chr5 (9 HSPs)
chr5 (561-666)||(33823144-33823249)
chr5 (561-647)||(33750178-33750264)
chr5 (561-666)||(33867306-33867411)
chr5 (561-681)||(33763708-33763828)
chr5 (561-671)||(33904850-33904960)
chr5 (561-657)||(33736438-33736534)
chr5 (573-666)||(33698932-33699025)
chr5 (561-682)||(33680386-33680507)
chr5 (40-120)||(14319158-14319237)
[»] scaffold0001 (1 HSPs)
scaffold0001 (561-662)||(149252-149353)
[»] scaffold0247 (1 HSPs)
scaffold0247 (561-657)||(19854-19950)
[»] scaffold0193 (1 HSPs)
scaffold0193 (561-657)||(23302-23398)
[»] scaffold0023 (1 HSPs)
scaffold0023 (561-681)||(88869-88989)
[»] chr8 (3 HSPs)
chr8 (571-682)||(21306326-21306437)
chr8 (69-152)||(9590394-9590476)
chr8 (192-242)||(9590532-9590578)
[»] chr2 (1 HSPs)
chr2 (55-96)||(38572135-38572176)


Alignment Details
Target: chr7 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 1 - 772
Target Start/End: Complemental strand, 5469183 - 5468412
Alignment:
Q  1 ataagaaataatattgtttctctcatgaaagcataggaaaatatttatttatactataaagcaaaacaatgactttgtaagcacaataactaataaagca 100  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  5469183 ataagaaataacattgtttctctcaagaaagcataggaaaatatttctttatactataaagcaaaacaatgactttgtaagcacaataactaa---agca 5469087  T
Q  101 ttctgagaaaaatcaaaattcaaaatcagaattggagattcaacaaagaaaatcatcagagttgg--------------gatacatactaatgatgcgac 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||    
T  5469086 ttctgagaaaaatcaaaattcaaaatcagaattggagattcaacaaagaaaatcatcagagttggatattcagaattgggatacatactaatgatgcgac 5468987  T
Q  187 atttatacatcaaacattatatcttaattagaggtaaatgcttatatttttcacttatttgtctttgtagtcgattcttacatgccagaacgcgcgcggg 286  Q
    ||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||      
T  5468986 atttatacatcaaacattatatctta----gagataaatgcttatatttttcacttatttgtctttgtagtcgattctcacatgccagaacgcgcgcg-- 5468893  T
Q  287 cgtacacacactttttgagtaatattctagtatggctatagtcata----gtcatacggtggatccatccctaccggtttgacattgattacttttcaga 382  Q
    |||||||||||||||||||||||| |||||| || |||||||||||    |||||||||||||||||||||||||||||||||||||||||             
T  5468892 cgtacacacactttttgagtaatactctagtgtg-ctatagtcatactaagtcatacggtggatccatccctaccggtttgacattgatta--------- 5468803  T
Q  383 ttttatttgggccgttttggatataagcataatgctagcaaagttttatcaaaagaaataacattttaacaagacatgcagaaaagaaaattaaacatgg 482  Q
         ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5468802 -----tttgggctgttttggatataagcataatgctagcaaagttttatcaaaagaaataacattttaacaagacatgcagaaaagaaaattaaacatgg 5468708  T
Q  483 ttaatttacatttggttctatatgtgtttaatttatatcatttggtagaagaagtggcattcaattcattatacctgaacctgctctttgaggaattaaa 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5468707 ttaatttacatttggttctatatgtgtttaatttatatcatttggtagaagaagtggcattcaattcattatacctgaacctgctctttgaggaattaaa 5468608  T
Q  583 tgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttcacacctatggtattatccatat 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5468607 tgccattttccttcaccatacttgttaatgtaagccttgagtaagttgtcttcctcgtatgtccatgcaccttttttcacgcctatggtattatccatat 5468508  T
Q  683 ccatacccacacctttaatatcctcgtataccctttccttaatcaacttcatacacaaatatata------tataggcatggtgtttcgtgtgtat 772  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||      |||||||||||||||||||||||||    
T  5468507 ccatacccacacctttaatatcctcgtataccctttccttaatcaacttcatatacaaatatatatatatatataggcatggtgtttcgtgtgtat 5468412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 561 - 666
Target Start/End: Original strand, 33823144 - 33823249
Alignment:
Q  561 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 660  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| ||    
T  33823144 acctgttcttttgggaattaaatgccattttccttcaccatacttgtgaatgtaagccttgagtaagttgtcttcctcatatgtccatgcaccttttctc 33823243  T
Q  661 acacct 666  Q
    | ||||    
T  33823244 aaacct 33823249  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 561 - 647
Target Start/End: Original strand, 33750178 - 33750264
Alignment:
Q  561 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtcca 647  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  ||||||||||  |||||||    
T  33750178 acctgctcttttaggaattaaatgccattttccttcaccatacttgttaatataagctttgagtaacttgtcttcctcagatgtcca 33750264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 561 - 666
Target Start/End: Original strand, 33867306 - 33867411
Alignment:
Q  561 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 660  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| |||||||||||||||||| ||    
T  33867306 acctgctctttgtggaactaaatgccattttccttcaccatacttctgcatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctc 33867405  T
Q  661 acacct 666  Q
    ||||||    
T  33867406 acacct 33867411  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 561 - 681
Target Start/End: Original strand, 33763708 - 33763828
Alignment:
Q  561 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 660  Q
    ||||||||| || ||||  ||||||||||||||||||||||||||||||||| ||||||||||||   | |||||||| |||||||| |||||| |||||    
T  33763708 acctgctctctgtggaacaaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacctcttttc 33763807  T
Q  661 acacctatggtattatccata 681  Q
    ||  || | ||||||||||||    
T  33763808 actgctctcgtattatccata 33763828  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 561 - 671
Target Start/End: Original strand, 33904850 - 33904960
Alignment:
Q  561 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 660  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| |||||||||||||||||| ||    
T  33904850 acctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctc 33904949  T
Q  661 acacctatggt 671  Q
    || ||| ||||    
T  33904950 acgcctctggt 33904960  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 561 - 657
Target Start/End: Original strand, 33736438 - 33736534
Alignment:
Q  561 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 657  Q
    |||||||||||||| || ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| ||||||||||||||||||    
T  33736438 acctgctctttgagaaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt 33736534  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 573 - 666
Target Start/End: Original strand, 33698932 - 33699025
Alignment:
Q  573 aggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttcacacct 666  Q
    ||||| |||||||||||||||||||||||||||||  ||| ||||||||||||   | |||||||| |||||||||||||||||| ||| ||||    
T  33698932 aggaactaaatgccattttccttcaccatacttgtggatgcaagccttgagtagattatcttcctcatatgtccatgcaccttttctcaaacct 33699025  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 682
Target Start/End: Original strand, 33680386 - 33680507
Alignment:
Q  561 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 660  Q
    ||||||||||| ||||| |||||||||||| ||||||||||| || | |||  |  |||||||||   |||| ||||| |||||||||||||||||| ||    
T  33680386 acctgctcttttaggaactaaatgccatttcccttcaccatatttttgaatacagtccttgagtagattgtcctcctcatatgtccatgcaccttttctc 33680485  T
Q  661 acacctatggtattatccatat 682  Q
    | |||| |||| || |||||||    
T  33680486 aaacctctggtcttttccatat 33680507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 14319158 - 14319237
Alignment:
Q  40 aatatttatttatactataaagcaaaacaatgactttgtaagcacaataactaataaagcattctgagaaaaatcaaaatt 120  Q
    ||||||| || || |||||||  | |||||||||||||||||||||||||||||| ||||||||| || ||||||||||||    
T  14319158 aatatttcttcatcctataaattagaacaatgactttgtaagcacaataactaat-aagcattctcaggaaaatcaaaatt 14319237  T

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Target: scaffold0001 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 561 - 662
Target Start/End: Original strand, 149252 - 149353
Alignment:
Q  561 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 660  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||   | ||||||||||||||||| ||||||||| ||    
T  149252 acctgctctttgaggaactaaatgccattttccttccccatacttgtcaatgcaagccttgagtagcttatcttcctcgtatgtccaggcaccttttctc 149351  T
Q  661 ac 662  Q
    ||    
T  149352 ac 149353  T

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Target: scaffold0247 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 561 - 657
Target Start/End: Complemental strand, 19950 - 19854
Alignment:
Q  561 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 657  Q
    ||||| ||||| |||||||||||||||||||||| |||||| ||||  |||||||||||||||  || ||||||| || ||||||||||||||||||    
T  19950 acctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt 19854  T

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Target: scaffold0193 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 561 - 657
Target Start/End: Complemental strand, 23398 - 23302
Alignment:
Q  561 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 657  Q
    ||||| ||||| |||||||||||||||||||||| |||||| ||||  |||||||||||||||  || ||||||| || ||||||||||||||||||    
T  23398 acctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt 23302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 561 - 681
Target Start/End: Complemental strand, 88989 - 88869
Alignment:
Q  561 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 660  Q
    |||||||||| |||||| || |||||||||||||| |||||||||||||||| | |||||||||||| | ||||| || |  ||||| | ||||||||||    
T  88989 acctgctcttcgaggaactagatgccattttccttgaccatacttgttaatgcatgccttgagtaagttatcttcttcattcgtccaggtaccttttttc 88890  T
Q  661 acacctatggtattatccata 681  Q
    || ||  ||||||||||||||    
T  88889 acgccactggtattatccata 88869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 571 - 682
Target Start/End: Original strand, 21306326 - 21306437
Alignment:
Q  571 tgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagct-gtcttcctcgtatgtccatgcaccttttttcacacctatg 669  Q
    ||||||| ||||| ||||||||||||||| ||| |||||||| ||||||||||| ||||  ||||||| ||| |||||||| |||||| ||||||||  |    
T  21306326 tgaggaactaaattccattttccttcaccgtacgtgttaatgcaagccttgagt-agctcatcttccttgtaagtccatgcgccttttctcacacctccg 21306424  T
Q  670 gtattatccatat 682  Q
    ||||| |||||||    
T  21306425 gtattctccatat 21306437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 9590394 - 9590476
Alignment:
Q  69 atgactttgtaagcacaataactaataaagcattctgagaaaaatcaaaattcaaaatcagaattggagattcaacaaagaaaa 152  Q
    ||||||||| ||||| ||| ||||||| |  ||||| | ||||||| ||||||| |||||||||||| ||||||||||||||||    
T  9590394 atgactttgaaagcaaaatgactaatacat-attctaaaaaaaatccaaattcagaatcagaattggggattcaacaaagaaaa 9590476  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 9590532 - 9590578
Alignment:
Q  192 tacatcaaacattatatcttaattagaggtaaatgcttatatttttcactt 242  Q
    |||||||||||||||| ||||    ||||||||||||||||||||||||||    
T  9590532 tacatcaaacattatagctta----gaggtaaatgcttatatttttcactt 9590578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 38572135 - 38572176
Alignment:
Q  55 tataaagcaaaacaatgactttgtaagcacaataactaataa 96  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  38572135 tataaagcaaaacagtgactttgtaagtacaataactaataa 38572176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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