View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_12 (Length: 452)
Name: NF15644_low_12
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 20 - 444
Target Start/End: Complemental strand, 54638450 - 54638026
Alignment:
| Q |
20 |
cgatccacatcatttccgaattcagaaggaaagaatctctataaacaatgaagatattcatatcatatagtaaataatgaagatatttttgagtttttga |
119 |
Q |
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| T |
54638450 |
cgatccacatcatttccgaattcagaaggaaagaatctctataaacaatgaagatattcatatcatatagtaaataatgaagatatttttgagtttttga |
54638351 |
T |
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| Q |
120 |
atgtaccttaacatttcctgcttctttgatggcagagatgattttatcttgatcactcaagtgcgagcgagccacagtacaaattacaacatcaacctgt |
219 |
Q |
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| T |
54638350 |
atgtaccttaacatttcctgcttctttgatggcagagatgattttatcttgatcactcaagtgcgagcgagccacagtagaaattacaacatcaacctgt |
54638251 |
T |
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| Q |
220 |
tttattgctttcaccaaactttgatgatcatatagatccccctgcatataacacactgaatatcatatccggacactcaaaatttgacatggatactaaa |
319 |
Q |
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| T |
54638250 |
tttattgctttcaccaaactttgatgatcatatagatccccctgcatataacacactgaatatcatatccggacactcaaaatttgacatggatactaaa |
54638151 |
T |
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| Q |
320 |
atatctctaaattattacactaagataatttgaccaatataaaaagttaagcgtgaccagaaaagaataggatttgacgcacaagaacaaaattgacgga |
419 |
Q |
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| T |
54638150 |
atatctctaaattattacactaagataatttgaccaatataaaaagttaagcgtgaccagaaaagaataggatttgacgcacaagaacaaaattgacgga |
54638051 |
T |
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| Q |
420 |
caagtccttgaatttgttgatgatg |
444 |
Q |
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| T |
54638050 |
caagtccttgaatttgttgatgatg |
54638026 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 26513862 - 26513812
Alignment:
| Q |
123 |
taccttaacatttcctgcttctttgatggcagagatgattttatcttgatc |
173 |
Q |
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| T |
26513862 |
taccttaacatttccagcttctttgatggctgaaatgatcttatattgatc |
26513812 |
T |
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