View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_13 (Length: 450)
Name: NF15644_low_13
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 26 - 434
Target Start/End: Original strand, 53090149 - 53090554
Alignment:
| Q |
26 |
tgagaaatgttatcaacacacattctaacatacattttccaacaatgtgtgttgctagcatttctcttgtcacgctatattgaaaacacaaatgaattta |
125 |
Q |
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| T |
53090149 |
tgagaaatgttatcaacacacgttctaacatatacttttcaataatgtgtgttgctagcatttctcttgtcacactatattgaaagcacaaatgaattta |
53090248 |
T |
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| Q |
126 |
cttatatattgtgcacagacaaaagtaaaaattaaaagcagaannnnnnnnncccttcacttcctttattcaattagacggtgaagaaagcaaaagacac |
225 |
Q |
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| T |
53090249 |
cttatatatagtgcacagacaaaagtaaaaattaaaagcagaatttttttttc--ttcacttcctttattcaattagacggtgaagaaagcaaaagacac |
53090346 |
T |
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| Q |
226 |
aaatacaagcaagcacatgacacactctgcaaaattgatgacaatctgcacttgtagtttgtaccctgtttcnnnnnnnnntcataggataggagaatct |
325 |
Q |
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| T |
53090347 |
aaatacaagcaagcacatgacacactctgcaaa-ttgatgacaatctgcacttgtagtttgtaccctgtttcaaaaaaaaaacataggataggagaatct |
53090445 |
T |
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| Q |
326 |
tattgatggatggaccttcaattaaaatgtccaagaattccttattggtgatttaaataattcaagtaattaaccattttgatattctaataaaattgag |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53090446 |
tattgatggatggaccttcaattaaaatgtccaagaattccttattggtgatttaaataattcaagtaattaaccattttgatattctaataaaattgag |
53090545 |
T |
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| Q |
426 |
tgatgtgat |
434 |
Q |
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| T |
53090546 |
tgatgtgat |
53090554 |
T |
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