View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_14 (Length: 446)
Name: NF15644_low_14
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 32 - 429
Target Start/End: Original strand, 25884620 - 25885017
Alignment:
| Q |
32 |
cacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatcccctttcttaattaccaactcttcaactctcagagcgtcg |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884620 |
cacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatcccctttcttaattaccaactcttcaactctcagagcgtcg |
25884719 |
T |
|
| Q |
132 |
ttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaattctcctctcgttgcactgcattctcatccattt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25884720 |
ttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaattctcctctcgttgcactgcattctcatccattt |
25884819 |
T |
|
| Q |
232 |
ccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataagagcctgaggaaaagtcctcaaaggctcttgaagtat |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25884820 |
ccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataagagcctgaggaaaagtcctcaaaggctcttgaagtat |
25884919 |
T |
|
| Q |
332 |
cttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaaatccaagaaaagttgcagttgcaaaggtaagaacagttacaactaatggtg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884920 |
cttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaaatccaagaaaagttgcagttgcaaaggtaagaacagttacaactaatggtg |
25885017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 32 - 427
Target Start/End: Original strand, 14319938 - 14320333
Alignment:
| Q |
32 |
cacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatcccctttcttaattaccaactcttcaactctcagagcgtcg |
131 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| ||| ||| || || |
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|
| T |
14319938 |
cacagaagccaataatgaagacttgcctgaaccaacagttcctacaatagcagcacggtcccctttcttaattaccaactcttccactgtcaacgcctca |
14320037 |
T |
|
| Q |
132 |
ttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaattctcctctcgttgcactgcattctcatccattt |
231 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
14320038 |
ttctcatccttatcatcccatgaaaatttcccatcttttatctccacggctacatcaccatcacaattctcctctctttgcactgcattctcatccattt |
14320137 |
T |
|
| Q |
232 |
ccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataagagcctgaggaaaagtcctcaaaggctcttgaagtat |
331 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||| |||||||||||| || |
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|
| T |
14320138 |
ccttactcaccatgaactcatccaacctccctaaagatattgttgcttgagaaatcattataagagcttgcgggaaagtcctcacaggctcttgaagaat |
14320237 |
T |
|
| Q |
332 |
cttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaaatccaagaaaagttgcagttgcaaaggtaagaacagttacaactaatgg |
427 |
Q |
| |
|
|||||||||||||||||| || || |||||||| | ||||||||||| ||||| ||||||| |||| |||||||||||||||||||| ||||||| |
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|
| T |
14320238 |
cttgataatcgaagttattgtaaatacagtgccggcattcaaaggaattccaattaaagttgaagttccaaaggtaagaacagttacagctaatgg |
14320333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 32 - 419
Target Start/End: Original strand, 14281789 - 14282176
Alignment:
| Q |
32 |
cacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatcccctttcttaattaccaactcttcaactctcagagcgtcg |
131 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| || || |
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|
| T |
14281789 |
cacagaagccaataatgaagacttgcccgatccaactgttcctacaatagcagcatggtcccctttcttaattaccaactcttcaactgtcaacgcctca |
14281888 |
T |
|
| Q |
132 |
ttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaattctcctctcgttgcactgcattctcatccattt |
231 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||| ||| | |||||||||| |
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|
| T |
14281889 |
ttctcatcgttatcatcccaagaaaatttcccatcttttatctccacagctacatcaccaccacaactctcatctctttgcacagcactatcatccattt |
14281988 |
T |
|
| Q |
232 |
ccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataagagcctgaggaaaagtcctcaaaggctcttgaagtat |
331 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||||| || |
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|
| T |
14281989 |
ccttactcatcatgaactcatccaacctccctaaagatatagttgcttgagaaatattgataagagcctgagggaaagtcctcagaggctcttgaagaat |
14282088 |
T |
|
| Q |
332 |
cttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaaatccaagaaaagttgcagttgcaaaggtaagaacagttaca |
419 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| | ||||||||| ||| | ||||||||||||| ||||||||||||||| |||| |
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|
| T |
14282089 |
cttgataatcgaagttattgtaaaaactgtgccggccttcaaaggagttcctataaaagttgcagttccaaaggtaagaacagctaca |
14282176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 32 - 417
Target Start/End: Original strand, 14303547 - 14303932
Alignment:
| Q |
32 |
cacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatcccctttcttaattaccaactcttcaactctcagagcgtcg |
131 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || | ||||| || ||| || |
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|
| T |
14303547 |
cacagaagccagtaatgaagacttgcctgatccaacagttcctacaacagcagcatggtcccctttcttaatcaccaattccttaactcgcaaagcctca |
14303646 |
T |
|
| Q |
132 |
ttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaattctcctctcgttgcactgcattctcatccattt |
231 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
14303647 |
ttctcatccatatcatcccaagaaaatttcccatcttttatctccacagctacatcaccattacagttctcctctctttgcactgcattctcatccattt |
14303746 |
T |
|
| Q |
232 |
ccttactcgtcatgaactcatccaacctccctaaagatattgttgcttgagaaatcatgataagagcctgaggaaaagtcctcaaaggctcttgaagtat |
331 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| ||||| |||||||| ||||| ||||||||||||| |||||||| |||| ||||||||||||||| |
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|
| T |
14303747 |
ccttactcatcatgaacttatccaacctccctaatgatatcgttgcttgcgaaatattgataagagcctgtggaaaagtactcataggctcttgaagtat |
14303846 |
T |
|
| Q |
332 |
cttgataatcgaagttatcgtgaaaacagtgccagaattcaaaggaaatccaagaaaagttgcagttgcaaaggtaagaacagtta |
417 |
Q |
| |
|
|||||| | | ||||| |||||||||||||||| ||||| ||||| || | |||||||||| | |||| ||||||||||||| |
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|
| T |
14303847 |
cttgatcactgcagttactgtgaaaacagtgccagcattcagaggaatccccataaaagttgcaactccaaatgtaagaacagtta |
14303932 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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