View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_15 (Length: 436)
Name: NF15644_low_15
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 77 - 436
Target Start/End: Original strand, 1440034 - 1440393
Alignment:
| Q |
77 |
cttcaaaacaatgactctgtcctaatgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttg |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1440034 |
cttcaaaacaatgactctgtcctaatgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttg |
1440133 |
T |
|
| Q |
177 |
catggagatacaggaagaagcgtctaagtcgagctaataccagacaaaatgattatcaaacattgatgtcataggctgtgctctaatgtttgattcacta |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1440134 |
catggagatacaggaagaagcgtctaagtcgagctaataccagacaaaatgattatcaaacattgatgtcataggctgtactctaatgtttgattcacta |
1440233 |
T |
|
| Q |
277 |
ccattgaagtccttggaatagaatagtggtgcgtttataggnnnnnnnnnnnnnnnnnnnnngaataagcttatagggagttataaagtagctaggtgct |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1440234 |
ccattgaagtccttggaatagaatagtggtgcgtttataggattttatttttatttttattagaataagcttatagggagttataaagtagctaggtgct |
1440333 |
T |
|
| Q |
377 |
gtataatgaatttattgtgcactccttaaattcaccatgatatatatagccaccaacatt |
436 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1440334 |
atataatgaatttattgtacactccttaaattcaccatgataaatatagccaccaacatt |
1440393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 8e-65; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 112 - 317
Target Start/End: Original strand, 28091654 - 28091858
Alignment:
| Q |
112 |
gttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgcatggagatacaggaagaagcgtctaagtcgagct |
211 |
Q |
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|||||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
28091654 |
gttatgttatgttaggtatgaatcaacttactggagatcacttgcagcaaatagaattcgggttgcatggagatacaggaagaaacgtctaagtaaagct |
28091753 |
T |
|
| Q |
212 |
aataccagacaaaatgattatcaaacattgatgtcataggctgtgctctaatgtttgattcactaccattgaagtccttggaatagaatagtggtgcgtt |
311 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| || ||||||| |||||||| ||||||| || | | |
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| T |
28091754 |
aataccacacaaaatgattatcaaacattgatgccataggctctactctaatgtttgattcacta-caatgaagtctttggaatataatagtgctgtgct |
28091852 |
T |
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| Q |
312 |
tatagg |
317 |
Q |
| |
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|||||| |
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| T |
28091853 |
tatagg |
28091858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 79 - 277
Target Start/End: Original strand, 28047471 - 28047669
Alignment:
| Q |
79 |
tcaaaacaatgactctgtcctaatgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgca |
178 |
Q |
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||||||| ||| ||||| | | |||||||||||||| || |||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||| |
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| T |
28047471 |
tcaaaaccatgtctctgacatcatgatttggttgttgtgttatgttaggtatcaatcaccttattggagatcacttgcagcaaacagaattcaggttgca |
28047570 |
T |
|
| Q |
179 |
tggagatacaggaagaagcgtctaagtcgagctaataccagacaaaatgattatcaaacattgatgtcataggctgtgctctaatgtttgattcactac |
277 |
Q |
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|||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||||| |
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| T |
28047571 |
tggagaagcaggaagaagcgtctaagacgagctaataccacacaaaattattatcaaacattgaggtcatagactgtactctaatgtttgattcactac |
28047669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 27917209 - 27917356
Alignment:
| Q |
101 |
atgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgcatggagatacaggaagaagcgtc |
200 |
Q |
| |
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||||| |||||||| || ||||||||||||||||| | ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
27917209 |
atgatatggttgttgtgttatgttaggtatgaatcaccttattggagatcccttgcagcaacgagaattcaggttgcatggagatacaggaagaagcgtc |
27917308 |
T |
|
| Q |
201 |
taagtcgagctaataccagacaaaatgattatcaaacattgatgtcat |
248 |
Q |
| |
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|||| | ||| ||||||| ||||||||||||||||||||||| ||||| |
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| T |
27917309 |
taaggccagcaaataccacacaaaatgattatcaaacattgaggtcat |
27917356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 79 - 239
Target Start/End: Original strand, 28035577 - 28035737
Alignment:
| Q |
79 |
tcaaaacaatgactctgtcctaatgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgca |
178 |
Q |
| |
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||||||| ||| ||||| | | |||||||||||||| || ||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||| |
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| T |
28035577 |
tcaaaaccatggctctgacatcatgatttggttgttgtgtcatgttaggtatcaatcaccttattggagatcacttgcagcaaacagaattcaggttgca |
28035676 |
T |
|
| Q |
179 |
tggagatacaggaagaagcgtctaagtcgagctaataccagacaaaatgattatcaaacat |
239 |
Q |
| |
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||||| | ||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |
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| T |
28035677 |
tggagcaataggaagaagcgtctaagtcaagctaataccacacaaaataattatcaaacat |
28035737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 28074634 - 28074772
Alignment:
| Q |
102 |
tgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgcatggagatacaggaagaagcgtct |
201 |
Q |
| |
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||||||||||||| || ||||||||||||||||| | |||||||||| ||||||||||| ||||||| || |||||||||| ||| ||||||| |||| |
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| T |
28074634 |
tgatttggttgttgtgttatgttaggtatgaatcaccttattggagattccttgcagcaaaaagaattcaggatgcatggagaaacatgaagaagtgtct |
28074733 |
T |
|
| Q |
202 |
aagtcgagctaataccagacaaaatgattatcaaacatt |
240 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||||| |
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| T |
28074734 |
aagtcaagctaataccacacaaaatgattatcaaacatt |
28074772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 79 - 248
Target Start/End: Original strand, 28017832 - 28018000
Alignment:
| Q |
79 |
tcaaaacaatgactctgtcctaatgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgca |
178 |
Q |
| |
|
||||||| ||| ||||| | | |||||||| ||||| || |||||||||||| |||| | ||||||||||||||||||||||| ||||| || |||| |
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|
| T |
28017832 |
tcaaaaccatgtctctgacatcatgatttg-ttgttgtgttatgttaggtatcaatcaccttattggagatcacttgcagcaaaggtaattcaggatgca |
28017930 |
T |
|
| Q |
179 |
tggagatacaggaagaagcgtctaagtcgagctaataccagacaaaatgattatcaaacattgatgtcat |
248 |
Q |
| |
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|||||| ||| ||||||| |||||| || ||||||| ||| ||||||||||||||||||||||| ||||| |
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| T |
28017931 |
tggagaaacatgaagaagtgtctaattcaagctaatgccacacaaaatgattatcaaacattgaggtcat |
28018000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 79 - 276
Target Start/End: Original strand, 27922092 - 27922287
Alignment:
| Q |
79 |
tcaaaacaatgactctgtcctaatgatttggttgttatgctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgca |
178 |
Q |
| |
|
||||||| ||| ||||| | |||||||||| | || || ||||||||||||||||| | ||| ||| ||||| | || || |||||||| ||||||| |
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|
| T |
27922092 |
tcaaaaccatggctctgacataatgatttgatgattgtgttatgttaggtatgaatcgccttatgggaaatcacatagagtaagcagaattcaggttgca |
27922191 |
T |
|
| Q |
179 |
tggagatacaggaagaagcgtctaagtcgagctaataccagacaaaatgattatcaaacattgatgtcataggctgtgctctaatgtttgattcacta |
276 |
Q |
| |
|
|||| | |||||||||||| |||||| |||||||||||| ||| ||| ||||||||||||||| | |||| |||| |||||||||||||||||||| |
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|
| T |
27922192 |
tggacaaacaggaagaagcatctaagacgagctaatacc--acacaataattatcaaacattgaaattatagactgtactctaatgtttgattcacta |
27922287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 157 - 277
Target Start/End: Original strand, 28003980 - 28004098
Alignment:
| Q |
157 |
agcaaacagaattcgggttgcatggagatacaggaagaagcgtctaagtcgagctaataccagacaaaatgattatcaaacattgatgtcataggctgtg |
256 |
Q |
| |
|
|||||||| ||||| | ||||||||| | |||||||||||| |||||| ||||||||| ||| |||| ||||||||||||||||| |||||| |||| |
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| T |
28003980 |
agcaaacaaaattcagattgcatggataaacaggaagaagcatctaagacgagctaatgccacacaa--tgattatcaaacattgaactcatagactgta |
28004077 |
T |
|
| Q |
257 |
ctctaatgtttgattcactac |
277 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28004078 |
ctctaatgtttgattcactac |
28004098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 119 - 242
Target Start/End: Original strand, 28018646 - 28018767
Alignment:
| Q |
119 |
tatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgcatggagatacaggaagaagcgtctaagtcgagctaatacca |
218 |
Q |
| |
|
||||||||||||||||| | ||| ||| ||||| | | |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
28018646 |
tatgttaggtatgaatcgccttatgggaaatcacatagaccaaacagaattcaggttgcatggagaagtaggaagaagcgtctaagacgagctaatacc- |
28018744 |
T |
|
| Q |
219 |
gacaaaatgattatcaaacattga |
242 |
Q |
| |
|
|||||||||| |||||||||||| |
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| T |
28018745 |
-acaaaatgatcatcaaacattga |
28018767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 28036357 - 28036471
Alignment:
| Q |
159 |
caaacagaattcgggttgcatggagatacaggaagaagcgtctaagtcgagctaataccagacaaaatgattatcaaacattgatgtcataggctgtgct |
258 |
Q |
| |
|
|||||||||||| | | ||||||||| ||||||||||||||||||| |||||||||||| ||| |||||| |||||| ||||| || || |||| || |
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| T |
28036357 |
caaacagaattcagatagcatggagaaacaggaagaagcgtctaagacgagctaatacc--acacaatgataatcaaatattgaactc--agactgtact |
28036452 |
T |
|
| Q |
259 |
ctaatgtttgattcactac |
277 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28036453 |
ctaatgtttgattcactac |
28036471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 339 - 428
Target Start/End: Original strand, 28091872 - 28091966
Alignment:
| Q |
339 |
gaataagcttatagggagttataaagtagctaggtgctgtataatgaatttattgtgc-------actccttaaattcaccatgatatatatagcca |
428 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||| ||||||||| |
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|
| T |
28091872 |
gaataagcttatag--agttataaagtagctaggtgctatataatgaatttattgtacgtaagtaaatccttaaattcaccatgataaatatagcca |
28091966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 28076024 - 28076136
Alignment:
| Q |
159 |
caaacagaattcgggttgcatggagatacaggaagaagcgtctaagtcgagctaataccagacaaaatgattatcaaacattgatgtcataggctgtgct |
258 |
Q |
| |
|
|||||||||||| | | ||||||||| ||||||||||| ||||||| ||||||||| || ||| | ||||||||||||||||| || || |||| || |
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|
| T |
28076024 |
caaacagaattcagatagcatggagaaacaggaagaagagtctaagacgagctaatgcc--acacagtgattatcaaacattgaactc--agactgtact |
28076119 |
T |
|
| Q |
259 |
ctaatgtttgattcact |
275 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28076120 |
ctaatgtttgattcact |
28076136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 28534350 - 28534418
Alignment:
| Q |
118 |
ctatgttaggtatgaatccacatattggagatcacttgcagcaaacagaattcgggttgcatggagata |
186 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| || ||||||| | |||||| ||||||||||||||| |
|
|
| T |
28534350 |
ctatgttaggtatgaatcaccttattggagatccctagcagcaacccgaattcaggttgcatggagata |
28534418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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