View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_17 (Length: 431)
Name: NF15644_low_17
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 415
Target Start/End: Complemental strand, 38984956 - 38984554
Alignment:
| Q |
13 |
tcatcaaaatagggaattcttaggtagttaaaatttaagaattgagtattttgtggtagactcttggatttggaattattctaaacgtcttggagaacgt |
112 |
Q |
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| T |
38984956 |
tcatcaaaatagggaattcttaggtagttaaaatttaagaattgagtgttttgtggtagact-ttggatttggaattattctaaacaccttggagaacgt |
38984858 |
T |
|
| Q |
113 |
agtcattga-gttttctgttcaagagaagagaatgagaaaaaggtaaaaattaaggtttattgttgaagacttattttttgtaaccattggatcactttg |
211 |
Q |
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||||||||| |||| ||||| |||||||| || ||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||| ||||||||| |
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| T |
38984857 |
agtcattgaagtttcctgtttaagagaagcgattgagaaaaaggtagaaattagggtttattgttaaagacttatttcttgtaaccattgaatcactttg |
38984758 |
T |
|
| Q |
212 |
taagatactcattgaaaattaattggagagatgttctcccttacaatgtaagtaaatttgggaagaaatgaatatacaaatatgtggtgtttgttcgtca |
311 |
Q |
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| T |
38984757 |
taagatacacattgaaaattaattggagagatattctcccttaagacgtaagtaaatttgggaagaaatgaatatacaaatatgtggtgttcgttcgcct |
38984658 |
T |
|
| Q |
312 |
attcttcttcttctttatcttatttcttattgtctttagtttgtttggtcactttggttattaatttctactgatttttcttcactcatcatagtattgg |
411 |
Q |
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| T |
38984657 |
attcttcttcttctttatcatatttcttattgtctttagtttgtttggtcactttggttattaatttctattgatttttcttcactcatcatagtattgg |
38984558 |
T |
|
| Q |
412 |
tgtg |
415 |
Q |
| |
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|||| |
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| T |
38984557 |
tgtg |
38984554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 313 - 415
Target Start/End: Complemental strand, 38985494 - 38985392
Alignment:
| Q |
313 |
ttcttcttcttctttatcttatttcttattgtctttagtttgtttggtcactttggttattaatttctactgatttttcttcactcatcatagtattggt |
412 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||| ||| |||||| |||| |||| ||||||||||| |||||||||||| || |
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| T |
38985494 |
ttcttcttcttctttatcttattttttattgtctttagtttgtttagtcagtttagttattgatttttactagtttttcttcacacatcatagtattagt |
38985395 |
T |
|
| Q |
413 |
gtg |
415 |
Q |
| |
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||| |
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| T |
38985394 |
gtg |
38985392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 38985643 - 38985574
Alignment:
| Q |
149 |
aaaaaggtaaaaattaaggtttattgttgaagacttattttttgtaaccattggatcactttgtaagata |
218 |
Q |
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| T |
38985643 |
aaaaatgtagaaattagggtttattattgaagatttatttcttgtaaccattgtatctctttgtaagata |
38985574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 9821864 - 9821569
Alignment:
| Q |
13 |
tcatcaaaatagggaattcttaggtagttaaaatttaagaattgagtatttt-gtggtagactcttggatttggaattattctaaacgtcttggagaacg |
111 |
Q |
| |
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||||||||||| ||||||||| |||| |||| |||||||| |||| |||| |||||| |||||||||||| |||||||||||||| ||||||||| | |
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| T |
9821864 |
tcatcaaaataaaaaattcttagctagtcaaaagttaagaatcgagtgtttttgtggtacactcttggattttgaattattctaaacaccttggagaatg |
9821765 |
T |
|
| Q |
112 |
tagtcattgagttttctgttcaagagaagagaatgagaaaaaggtaaaaattaaggtttattgttgaagacttattttttgtaaccattggatcactttg |
211 |
Q |
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| ||||||||||| || || ||||||||||| |||||| |||||| |||||| ||||||||||| ||| |||||| |||||||| ||| || ||||| |
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| T |
9821764 |
aaatcattgagtttcctatttaagagaagagattgagaacaaggtagaaattagggtttattgttaaaggcttattacttgtaacccttgtattgctttg |
9821665 |
T |
|
| Q |
212 |
taagatactcattgaaaattaattggagagatgttctcccttacaatgtaagtaaatttgggaagaaatgaatatacaaatatgtggtgtttgttc |
307 |
Q |
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| T |
9821664 |
taagatactcattgatgatgaattgaagagatgctctcccccaagacgtaattaaatttggtcagaaatggatgcacaaaaatgtggtgttcgttc |
9821569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 345
Target Start/End: Complemental strand, 9821571 - 9821542
Alignment:
| Q |
316 |
ttcttcttctttatcttatttcttattgtc |
345 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
9821571 |
ttcttcttctttatcttatttcttattgtc |
9821542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 415
Target Start/End: Original strand, 16605801 - 16605866
Alignment:
| Q |
350 |
gtttgtttggtcactttggttattaatttctactgatttttcttcactcatcatagtattggtgtg |
415 |
Q |
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| T |
16605801 |
gtttgcttgatcactttggttattgattgctaataattttgctccactcatcatagtattggtgtg |
16605866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 16605598 - 16605711
Alignment:
| Q |
128 |
tgttcaagagaagagaatgagaaaaaggtaaaaattaaggtttattgttgaagacttattttttgtaaccattggatcactttgtaagatactcattgaa |
227 |
Q |
| |
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|||||||| |||||| || ||||| |||||||||||||||||||||||||| |||| ||||||| ||| || |||| ||||| ||||||||| |
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| T |
16605598 |
tgttcaaggaaagagattgggaaaattgtaaaaattaaggtttattgttgaaggacaatttcttgtaactcttgtatatctttataagaaactcattgat |
16605697 |
T |
|
| Q |
228 |
aattaattggagag |
241 |
Q |
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||| ||||||||| |
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| T |
16605698 |
aatggattggagag |
16605711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 37761635 - 37761603
Alignment:
| Q |
138 |
aagagaatgagaaaaaggtaaaaattaaggttt |
170 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
37761635 |
aagagaatgagaaaaaggtaaaaattaaggttt |
37761603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 88871 - 88810
Alignment:
| Q |
327 |
tatcttatttcttattgtctttagtttgtttggtcactttggttattaatttctactgatttt |
389 |
Q |
| |
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|||||||||| ||||||| | | ||||||||||||| |||||||||| ||||||||| ||||| |
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| T |
88871 |
tatcttattt-ttattgtttgtggtttgtttggtcaatttggttattgatttctactcatttt |
88810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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