View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_19 (Length: 422)
Name: NF15644_low_19
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 405
Target Start/End: Complemental strand, 1918420 - 1918035
Alignment:
| Q |
14 |
tactcaatatattactcacctccactacctccctcaaccacccttctcttgnnnnnnncttttcatcactctctcattctctccctcctattaacaactc |
113 |
Q |
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| T |
1918420 |
tactcaatatattactcacctccactacctc----aaccacccttctcttgtttttttcttttcatcactctctcattctctccctcctattaacaactc |
1918325 |
T |
|
| Q |
114 |
aacccacctcttatccacactgtactttcattcttccacacagttatcttacataatattcttggcacaaaattaactttatataatagcataatttcca |
213 |
Q |
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| T |
1918324 |
aacccacctcttatccacactgtactttcattcttccacacaattatcttacataatattcttggcacaaaattaactttatataatagcataatttcca |
1918225 |
T |
|
| Q |
214 |
caaaattaatggaggagtcaggagaaaattggccttctaattctgatttggtaaaatccaattgcaataacgtacctattatataatacatatgattttg |
313 |
Q |
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| T |
1918224 |
caaaattaatggaggagtcaggagaaaattggccttctaattctgatttggtaaaatccaattgcaataacgtatctattatataatacatatgattttg |
1918125 |
T |
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| Q |
314 |
agtttgagttagtcatagtcatattgagtatgtgtataactttcttttctttgnnnnnnnnngcatttattcataggaaataagtgatgaag |
405 |
Q |
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| T |
1918124 |
agtttgagttagtcatagtcatattgagtatgtgtataactttcttttctttg--tttttttgcatttattcataggaaataagtgatgaag |
1918035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 122 - 366
Target Start/End: Complemental strand, 1872289 - 1872042
Alignment:
| Q |
122 |
tcttatccacactgtactttcattcttccacacagttatcttacata-atatt-cttggcacaaaattaactttatataatagcataatttccacaaaat |
219 |
Q |
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| T |
1872289 |
tcttatccacactgtactttcattcttccaaacaattaccttacatatatatttcttggcacaaaattaactttatataatagcataattttcacaaaat |
1872190 |
T |
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| Q |
220 |
taatggaggagtcaggagaaaattggccttc---taattctgatttggtaaaatccaattgcaataacgtacctattatataatacatatgat---tttg |
313 |
Q |
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||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| | || |
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| T |
1872189 |
taatggaagagtcaggagaaaattggccttctcatgattctgatttggtaaaatccaattgcaa-----cacctattatataatacatatgctacacatg |
1872095 |
T |
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| Q |
314 |
agtttgagttagtcatagtcatattgagtatgtgtataactttcttttctttg |
366 |
Q |
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| |||| |||||||||||||||||||| |||| |||||||| ||||||||||| |
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| T |
1872094 |
attttgtgttagtcatagtcatattgaatatgagtataactctcttttctttg |
1872042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 37 - 405
Target Start/End: Complemental strand, 17491447 - 17491081
Alignment:
| Q |
37 |
actacctccctcaaccacccttctcttgnnnnnnncttttcatcactctctcattctctccctcctattaacaactcaacccacctcttatccacactgt |
136 |
Q |
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| T |
17491447 |
actacctccctcaaccacccttctcttgtttttttcttttcatcactctctcattctctccctcctattaacaactcaacccacctcttatccacactgt |
17491348 |
T |
|
| Q |
137 |
actttcattcttccacacagttatcttacataatattcttggcacaaaattaactttatataatagcataatttccacaaaattaatggaggagtcagga |
236 |
Q |
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| T |
17491347 |
actttcattcttccacacaattatcttacataatattcttggcacaaaattaactttatataatagcataatttccacaaaattaatggaggagtcagga |
17491248 |
T |
|
| Q |
237 |
gaaaattggccttctaattctgatttggtaaaatccaattgcaataacgtacctattatataatacatatgattttgagtttgagttagtcatagtcata |
336 |
Q |
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| T |
17491247 |
gaaaattggccttataattctgatttggtaaaatccaattgcaataacgtacctattatataatacatatgattttgagtttgagttagtcatagtcata |
17491148 |
T |
|
| Q |
337 |
ttgagtatgtgtataactttcttttctttgnnnnnnnnngcatttattcataggaaataagtgatgaag |
405 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17491147 |
ttgagtatgtgtataactttcttttctttg--tttttttgcatttattcataggaaataagtgatgaag |
17491081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 37 - 405
Target Start/End: Original strand, 17561767 - 17562133
Alignment:
| Q |
37 |
actacctccctcaaccacccttctcttgnnnnnnncttttcatcactctctcattctctccctcctattaacaactcaacccacctcttatccacactgt |
136 |
Q |
| |
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| T |
17561767 |
actacctccctcaaccacccttctcttgtttttttcttttcatcactctctcattctctccctcctattaacaactcaacccacctcttatccacactgt |
17561866 |
T |
|
| Q |
137 |
actttcattcttccacacagttatcttacataatattcttggcacaaaattaactttatataatagcataatttccacaaaattaatggaggagtcagga |
236 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17561867 |
actttcattcttccacacaattatcttacataatattcttggcacaaaattaactttatataatagcataatttccacaaaattaatggaggagtcagga |
17561966 |
T |
|
| Q |
237 |
gaaaattggccttctaattctgatttggtaaaatccaattgcaataacgtacctattatataatacatatgattttgagtttgagttagtcatagtcata |
336 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17561967 |
gaaaattggccttataattctgatttggtaaaatccaattgcaataacgtacctattatataatacatatgattttgagtttgagttagtcatagtcata |
17562066 |
T |
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| Q |
337 |
ttgagtatgtgtataactttcttttctttgnnnnnnnnngcatttattcataggaaataagtgatgaag |
405 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17562067 |
ttgagtatgtgtataactttcttttctttg--tttttttgcatttattcataggaaataagtgatgaag |
17562133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 307
Target Start/End: Complemental strand, 46006800 - 46006675
Alignment:
| Q |
172 |
ttcttggcacaaaattaactttatataatagcataatttccacaaaattaatggaggagtcaggagaaaattggccttctaattctgatttggtaaaatc |
271 |
Q |
| |
|
|||||| |||||||| ||||||||| ||||||||||||| |||||||||||| ||| | |||||| ||||| ||||||||||||||||||| |
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| T |
46006800 |
ttcttgacacaaaat-aactttatacaatagcataattttcacaaaattaatcgag-----cttatttaattggtcttctgattctgatttggtaaaatc |
46006707 |
T |
|
| Q |
272 |
caattgcaataacgtacctattatataatacatatg |
307 |
Q |
| |
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|||||||||| ||||||||| ||||||||||| |
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| T |
46006706 |
caattgcaat----cacctattatttaatacatatg |
46006675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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