View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_20 (Length: 403)
Name: NF15644_low_20
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 386
Target Start/End: Original strand, 35275423 - 35275797
Alignment:
| Q |
12 |
agaagcaaagggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatg |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275423 |
agaatcaaagggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatg |
35275522 |
T |
|
| Q |
112 |
cgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |
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| T |
35275523 |
cgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacttttgttttgaaacattctag |
35275622 |
T |
|
| Q |
212 |
tgagtgtggataggtcagaagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatga |
311 |
Q |
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||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275623 |
tgagtgtcgataggtcagaagatggtccagggatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatga |
35275722 |
T |
|
| Q |
312 |
gggtcctccaagctatataaattaattgaaacatggttataggataaacatattgtttatatatagggttaatat |
386 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35275723 |
gggtcctccaagctatataaattaattgaaacatggttataggatacacatattgtttatatatagggttaatat |
35275797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 35289545 - 35289849
Alignment:
| Q |
22 |
ggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctga |
121 |
Q |
| |
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||||| ||||| ||||||||||||| ||||| |||||| |||||||||||| || |||||| |||||||||||| ||| |||| ||| ||| |||||| |
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| T |
35289545 |
ggtgccaaatttatgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctga |
35289644 |
T |
|
| Q |
122 |
aaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtgga |
221 |
Q |
| |
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|||||||||| || | ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35289645 |
aaaattgacattctgcttgacctatggtgtgtgcaccagaaaggacagtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtgga |
35289744 |
T |
|
| Q |
222 |
taggtcagaagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctcca |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |
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| T |
35289745 |
taggtcagaagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactacccatgaaggacctcca |
35289844 |
T |
|
| Q |
322 |
agcta |
326 |
Q |
| |
|
||||| |
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|
| T |
35289845 |
agcta |
35289849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 63 - 350
Target Start/End: Original strand, 35280241 - 35280528
Alignment:
| Q |
63 |
ttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagat |
162 |
Q |
| |
|
|||||||||||| || |||||| |||| ||||||| |||||||| ||||||||||| |||||||||||| || | ||| |||||||||||||||||||| |
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| T |
35280241 |
ttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaa |
35280340 |
T |
|
| Q |
163 |
aggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtcagaagatggtcctggaatttggctatttgctgcac |
262 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| || |||||| | |||||||||| |
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| T |
35280341 |
aggactgtaaggtctcttaatgttagacctttgttttgaaacattttagtgagtgtggataggtcagaagctggtgaagggatttgggtgtttgctgcac |
35280440 |
T |
|
| Q |
263 |
tttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagctatataaattaattgaaacatggtta |
350 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||| ||||| |
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| T |
35280441 |
tttgacttgctgttcttgcatctcttcttccaagtggtactatccatgaaggacctccaagctatatagattaattgaaacaaggtta |
35280528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 35307343 - 35307647
Alignment:
| Q |
22 |
ggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctga |
121 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| |||||||||||||| |
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| T |
35307343 |
ggtgctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctga |
35307442 |
T |
|
| Q |
122 |
aaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtgga |
221 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||||||||| || ||||| |||||| || |||||||| ||| | |||||| |||||||| ||||| |
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|
| T |
35307443 |
aaaattggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtcacttgcagttagacccttggctgaaaacattgtagtgagagtgga |
35307542 |
T |
|
| Q |
222 |
taggtcagaagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctcca |
321 |
Q |
| |
|
||||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
35307543 |
aaggtcagaaaatggtgaagggatttgactatttgctgcactttggcttgctgttcttgcatctcttcttccaagtggtactacccatgttggtcctcca |
35307642 |
T |
|
| Q |
322 |
agcta |
326 |
Q |
| |
|
||||| |
|
|
| T |
35307643 |
agcta |
35307647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 35322344 - 35322648
Alignment:
| Q |
22 |
ggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctga |
121 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| |||||||||||||| |
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|
| T |
35322344 |
ggtgctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctga |
35322443 |
T |
|
| Q |
122 |
aaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtgga |
221 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||||||||| || ||||| |||||| || |||||||| |||| | ||||||| | ||||| ||||| |
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|
| T |
35322444 |
aaaattggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtcacttgcagttagacccttgtctgtaaacattttggtgagagtgga |
35322543 |
T |
|
| Q |
222 |
taggtcagaagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctcca |
321 |
Q |
| |
|
||||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
35322544 |
aaggtcagaaaatggtgaagggatttgactatttgctgcactttggcttgctgttcttgcatctcttcttccaagtggtactacccatgttggtcctcca |
35322643 |
T |
|
| Q |
322 |
agcta |
326 |
Q |
| |
|
||||| |
|
|
| T |
35322644 |
agcta |
35322648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 63 - 345
Target Start/End: Original strand, 35311730 - 35312014
Alignment:
| Q |
63 |
ttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagat |
162 |
Q |
| |
|
|||||||||||| || |||||| |||||||||||| |||||||| ||||||| ||||||| ||| ||||||| ||| |||||||||||||||||||| |
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|
| T |
35311730 |
ttttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacaatcgacactctccttggcctatggtgtgtgcaccagaa |
35311829 |
T |
|
| Q |
163 |
aggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtcagaagatggtcctggaatttggctatttgctgcac |
262 |
Q |
| |
|
|| ||||| || ||| || |||||||| ||| | |||||| ||||||||| ||| ||||| | | ||||||| || ||||||||||||||||||| |
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|
| T |
35311830 |
agtactgtgagatcacttgcagttagacccttggctaaaaacattgtagtgagtctggttaggttaaaggatggtctagggatttggctatttgctgcac |
35311929 |
T |
|
| Q |
263 |
tttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagct--atataaattaattgaaacat |
345 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||||||| |
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|
| T |
35311930 |
tttgatttgctgttcttgcatctcttcttccaagtggtactgtccatgagggtcctccaagctacaaattaattaattgaaacat |
35312014 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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