View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_21 (Length: 364)
Name: NF15644_low_21
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 7664397 - 7664715
Alignment:
| Q |
1 |
gagcatcttcaatggtgaactttactcgttgttattttgtggatcttattggaccaaataatattgaagcaactcctttattttttacttcaatggtgat |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
7664397 |
gagcatctttaatggtgaactttactcgttgttattttgtgggtcttattgtaccaaataatcttgaagcaactcctctattttttacttcaatggtgat |
7664496 |
T |
|
| Q |
101 |
ctataaaatactcatatttgatcccacaaatttacctcatacatgaattctttattccttttattgttattttaatcgaaataaccattgcttcatgaat |
200 |
Q |
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||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7664497 |
ctataaaatactcatgtctgatgctacaaatttacctcatacatgaattctttattccttttattgttattttaatcgaaataaccattgcttcatgaat |
7664596 |
T |
|
| Q |
201 |
caaccataaatacatgccggagtactccagccaaaattcatgcaaaatttccattctttcgtgaagtcagctggcgcacgctatgaaaaaagcaaccgtt |
300 |
Q |
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| T |
7664597 |
caaccataaatacatgccggagtactccagccaaaattcatgcaaaatttccattctttcgtgaagtca---ggcgcacgctatgaaaaaagcaaccgtt |
7664693 |
T |
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| Q |
301 |
ggagttgctctaatgcattcct |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
7664694 |
ggagttgctctaatgcattcct |
7664715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 55 - 311
Target Start/End: Original strand, 49159557 - 49159811
Alignment:
| Q |
55 |
caaataatattgaagcaactcctttattttttacttcaatggtgatctataaaatactcatatttgatcccacaaatttacctcatacatgaattcttta |
154 |
Q |
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| T |
49159557 |
caaatcatcttgaaacaactcttctattttttattccaatgatgatctataaaatactcatattgagtcccacaaatttacctca--catcaatacttta |
49159654 |
T |
|
| Q |
155 |
ttccttttattgttattttaatcgaaataaccattgcttcatgaatcaaccataaatacatgccggagtactccagccaaaattcatgcaaaatttccat |
254 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
49159655 |
ttccttttattgttattttaatcaaaataaccgatgcttcatgaaacaaccataattacatgttggagtactctagccaaaattcatgcaaaatttccat |
49159754 |
T |
|
| Q |
255 |
tctttcgtgaagtcagctggcgcacgctatgaaaaaagcaaccgttggagttgctct |
311 |
Q |
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||||| |||| | || |||| | |||||||||| |||||| |||||||||||||| |
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| T |
49159755 |
tctttggtgatgatagttggcacgcgctatgaaacaagcaaatgttggagttgctct |
49159811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 5335028 - 5335227
Alignment:
| Q |
10 |
caatggtgaactttactcgttgttattttgtggatcttattggaccaaataatattgaagcaactcctttattttttacttcaatggtgatctataaaat |
109 |
Q |
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|
|||||||||||| | || |||||||||||||| | |||| |||||| || || ||| ||||||| ||||||| ||| ||||||||||||||||||| |
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| T |
5335028 |
caatggtgaactccattcattgttattttgtgggttccattgtgccaaatcatcttaaagtaactcctctatttttcactccaatggtgatctataaaat |
5335127 |
T |
|
| Q |
110 |
actcatatttgatcccacaaatttacctcatacatgaattctttattcctt---ttattgttattttaatcgaaataaccattgcttcatgaatcaacca |
206 |
Q |
| |
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|||||| || | |||||||||||||| ||| |||| ||| ||||||||||| || |||||||||||||| ||| ||| ||||||||||||| |||||| |
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| T |
5335128 |
actcatgttaggtcccacaaatttacttcaaacattaatgctttattccttctgttgttgttattttaatcaaaagaactattgcttcatgaagcaacca |
5335227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 45737112 - 45737191
Alignment:
| Q |
97 |
tgatctataaaatactcatatttgatcccacaaatttacctcatacatgaattctttattccttttattgttattttaat |
176 |
Q |
| |
|
|||||||||||||| | ||||| ||||| |||||||||||| |||| ||| ||||| ||||| ||||||| ||||||| |
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| T |
45737112 |
tgatctataaaataattatattgagtcccataaatttacctcacacattaatactttagtccttctattgtttttttaat |
45737191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 34374595 - 34374756
Alignment:
| Q |
1 |
gagcatcttcaatggtgaactttactcgttgttattttgtggatcttattggaccaaataatattgaagcaactcctttattttttacttcaatggtgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||||||||| || ||||| ||||||| || |||||||| ||||| |||| |||||| |||||||||| |
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| T |
34374595 |
gagcatcttcaatggtgaactctacccactgttattttgtgggtcatattgtaccaaatcatcttgaagcatctcctatattatttactccaatggtgat |
34374694 |
T |
|
| Q |
101 |
ctataaaatactcatatttgatcccacaaatttacctcatacatgaattctttattcctttt |
162 |
Q |
| |
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|| |||| |||||||||||| | |||||||||||||||| |||| ||| |||| |||||||| |
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| T |
34374695 |
ctttaaattactcatatttggttccacaaatttacctcacacattaatactttgttcctttt |
34374756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 26454074 - 26454003
Alignment:
| Q |
70 |
caactcctttattttttacttcaatggtgatctataaaatactcatatttgatcccacaaatttacctcata |
141 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| || |||| ||||||||| | |||||||| ||||| ||||| |
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|
| T |
26454074 |
caactcatttattttttactccaatggtgaactctaaacaactcatattaggtcccacaactttacttcata |
26454003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 4080235 - 4080158
Alignment:
| Q |
64 |
ttgaagcaactcctttattttttacttcaatggtgatctataaaatactcatatttgatcccacaaatttacctcata |
141 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||| | |||| || |||||| |||||| || ||||||||||| |
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| T |
4080235 |
ttgaaacaactcatttattttttacttcaatggtgaaatctaaacaacccatattgaatcccataactttacctcata |
4080158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 3311281 - 3311225
Alignment:
| Q |
80 |
attttttacttcaatggtgatctataaaatactcatatttgatcccacaaatttacc |
136 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||| || | |||||||| |||||| |
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|
| T |
3311281 |
attttttacttcaatggtaaactttaaaatactcatcttgggtcccacaattttacc |
3311225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 25812783 - 25812883
Alignment:
| Q |
29 |
ttgttattttgtggatcttattggaccaaataatattgaagcaactcctttattttttacttcaatggtgatctataaaa-tactcatatttgatcccac |
127 |
Q |
| |
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|||||||||||||||||| ||| ||| || || || ||||||||| ||||||| |||||||||||||| || ||||| ||||||||| | |||||| |
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| T |
25812783 |
ttgttattttgtggatctcattatgccacatcattttaaagcaactcacttattttgtacttcaatggtgaactttaaaagaactcatattaggtcccac |
25812882 |
T |
|
| Q |
128 |
a |
128 |
Q |
| |
|
| |
|
|
| T |
25812883 |
a |
25812883 |
T |
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