View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_24 (Length: 338)
Name: NF15644_low_24
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 27908160 - 27908467
Alignment:
| Q |
10 |
gagaagaagaagaacaacaagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtca |
109 |
Q |
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| T |
27908160 |
gagaagaagaagaacaacaagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtca |
27908259 |
T |
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| Q |
110 |
aggccaagatccaggttagttagggtttcttatgatcgctgattttgttacttttaattttgcttactcgatttattttaagggttttattaaaa-ttcg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27908260 |
aggccaagatccaggttagttagggtttcttatgatcgctgattttgttacttttaattttgcttactcgatttattttaagggttttattaaaatttcg |
27908359 |
T |
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| Q |
209 |
tgtctgctaggttttacaattgaaattatttgtgaaaattctactgataaaacaacaaagaaaaactatgggtgtgtgtgtttggaatttggattaggtt |
308 |
Q |
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| T |
27908360 |
tgtctgctaggttttacaattgaaattatttgtgaaaattctactaataaaacaacaaagaaaaactatgg--gtgtgtgtttggaatttggattaggtt |
27908457 |
T |
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| Q |
309 |
acttttatgg |
318 |
Q |
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|||||||||| |
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| T |
27908458 |
acttttatgg |
27908467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 31306682 - 31306589
Alignment:
| Q |
29 |
agatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatcca |
122 |
Q |
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| T |
31306682 |
agatgcagatctttgtgaaaacattgacaggaaaaaccatcactcttgaggtagagagttccgatacaattgataatgtcaaggccaagatcca |
31306589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 40493201 - 40493082
Alignment:
| Q |
10 |
gagaagaagaagaacaacaagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtca |
109 |
Q |
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|||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| |
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| T |
40493201 |
gagaagaagaagaagag-aagatgcagatcttcgtgaagactttgaccggaaagactatcaccctcgaggttgagagcagcgacacaatcgacaacgtca |
40493103 |
T |
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| Q |
110 |
aggccaagatccaggttagtt |
130 |
Q |
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| T |
40493102 |
aggccaagatccaggttagtt |
40493082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 33772936 - 33773031
Alignment:
| Q |
29 |
agatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg |
124 |
Q |
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||||||| |||||||| ||||| | || |||||||| ||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| |
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| T |
33772936 |
agatgcaaatcttcgtgaaaaccctcactggaaagaccatcactctcgaggttgagagttccgacaccatcgacaacgttaaggctaagatccagg |
33773031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 36459855 - 36459952
Alignment:
| Q |
27 |
caagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg |
124 |
Q |
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| T |
36459855 |
caagatgcagatcttcgtgaaaaccctaacagggaagacgataaccctcgaggttgagtcttccgacacaatcgacaatgtcaaagccaagatccagg |
36459952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 33775031 - 33775065
Alignment:
| Q |
90 |
cgacaccatcgacaacgtcaaggccaagatccagg |
124 |
Q |
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| T |
33775031 |
cgacaccatcgacaacgtcaaagccaagatccagg |
33775065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 42609768 - 42609683
Alignment:
| Q |
31 |
atgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaa |
116 |
Q |
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| T |
42609768 |
atgcagatcttcgtgaaaaccctaaccgggaaaaccatcaccctcgaggttgagagcagtgacacaatcgacaatgtcaaggccaa |
42609683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 25948399 - 25948487
Alignment:
| Q |
31 |
atgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagat |
119 |
Q |
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| T |
25948399 |
atgcagatattcgtgaaaaccctaacagggaagacaattactctcgaagtcgagagtagtgacaccatcgacaatgtcaaagccaagat |
25948487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 42075576 - 42075669
Alignment:
| Q |
31 |
atgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg |
124 |
Q |
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|||||||||||||| ||||| | ||||| ||||||||||| || ||||| ||| |||||||| ||||| |||||||| || ||||| |||| |
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| T |
42075576 |
atgcagatcttcgtgaaaaccctaaccggcaagactatcacccttgaggtggagtcaagcgacactatcgataacgtcaaagctaagattcagg |
42075669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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