View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_27 (Length: 296)
Name: NF15644_low_27
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 45466876 - 45467136
Alignment:
| Q |
1 |
tgttctggtcctaccaacgtcaagaaatcgaacacgtcaatgatttcaaaaaccatcaacttccattagcacgcattaagaaaatcatgaaagctgatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45466876 |
tgttctggtcctaccaacgtcaagaaatcgaacacgtcaatgacttcaaaaaccatcaacttccattagcacgcattaagaaaatcatgaaagctgatga |
45466975 |
T |
|
| Q |
101 |
agacgttcgcatgatttctgcagaagcaccaattctctttgctaaagcttgtgagcttttcattcttgaactcaccattcgttcttggcttcatgctgaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45466976 |
agacgttcgcatgatttctgcagaagcaccaattctctttgctaaagcttgtgagcttttcattcttgaactcaccattcgttcttggcttcatgctgaa |
45467075 |
T |
|
| Q |
201 |
gagaataaacgacgaactcttcagaaaaatgatattgctgctgctattactaggactgata |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45467076 |
gagaataaacgacgaactcttcagaaaaatgatattgctgctgctattactaggactgata |
45467136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 46851686 - 46851644
Alignment:
| Q |
219 |
cttcagaaaaatgatattgctgctgctattactaggactgata |
261 |
Q |
| |
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|||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
46851686 |
cttcagaagaatgatattgctgctgcaatcactaggactgata |
46851644 |
T |
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