View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_28 (Length: 256)
Name: NF15644_low_28
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 13206979 - 13206830
Alignment:
| Q |
1 |
ttcggtgtcctgtttccgggtgcagtgggtt-gttagaagctgagttttgccgttctattcttccggccgagctttttgaaagctggtgtaaggcgttgt |
99 |
Q |
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| T |
13206979 |
ttcggtgtcctgtttctgggtgcaatggttttgctagaagctgagttatgtcgttctattcttcctgtggtcctttttgaacgctggtgtaaggcgttgt |
13206880 |
T |
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| Q |
100 |
gcgaggctttgtttgtttcagagaaattctattgtccctttagagattgt |
149 |
Q |
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| T |
13206879 |
gcgaggctttgtttgttttagagaaattctattgtccctttagagattgt |
13206830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 43920995 - 43920842
Alignment:
| Q |
69 |
gagctttttgaaagctggtgtaaggcgttgtgcgaggctttgtttgtttcag-agaaattctattgtccctttagagattgttctgctcttttgatcaag |
167 |
Q |
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| T |
43920995 |
gagctttttgaacgatggtgtaag-cgttgtgcgaggctttgtttgtttcgggagaaattctattgtccctttacagattgttcttctcttttgat---- |
43920901 |
T |
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| Q |
168 |
gaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgttttgtgca |
227 |
Q |
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| T |
43920900 |
-acggaaatgtggcaattacaaattcagaatgtcgtcatagtaatatgatgttttgtgca |
43920842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 235
Target Start/End: Original strand, 19314772 - 19314965
Alignment:
| Q |
45 |
ttttgccgttctattcttccggccgagctttttgaaagctggtgtaaggcgttgtgcgaggctttgtt---tgtttcagagaaattctattgtcccttta |
141 |
Q |
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| T |
19314772 |
ttttgccgttctattcttccggccaaggtttttgaacggtggggtaaggcgctttgtgaggctttgttcgatgtttcgaataaattctattgtccatttc |
19314871 |
T |
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| Q |
142 |
gagattgttctgctcttttgatcaaggaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgttttgtgcaaaatgtaa |
235 |
Q |
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| T |
19314872 |
cagactgttcagcacttttgatcgatgatggaacggaagctgttagaaattcagaatgccctaattgtaataggatgttttgtgcacaatgtaa |
19314965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 236
Target Start/End: Original strand, 19270475 - 19270678
Alignment:
| Q |
36 |
gaagctgagttttgccgttctattcttccggccgagctttttgaaagctggtgtaaggcgttgtgcgaggctttgtt---tgtttcagagaaattctatt |
132 |
Q |
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| T |
19270475 |
gaagcggagttttgccgttttattctgcctgccgaggtttttgatcgctggggtcaagggttgtgtgaggctatgttcgatgtttcagaaaagttctact |
19270574 |
T |
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| Q |
133 |
gtccctttagagattgttctgctcttttgatcaaggaaggaactgaggcaattagaaattcagaatgtcctcactgtaataggatgttttgtgcaaaatg |
232 |
Q |
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| T |
19270575 |
gtccctttgcagactgttctgctcttttgatcaatgacggaatcgatactgttaaaaactcagaatgtcctaattgtaataggatgttttgtgcaaaatg |
19270674 |
T |
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| Q |
233 |
taag |
236 |
Q |
| |
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|||| |
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| T |
19270675 |
taag |
19270678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 19260440 - 19260486
Alignment:
| Q |
188 |
aaattcagaatgtcctcactgtaataggatgttttgtgcaaaatgta |
234 |
Q |
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| T |
19260440 |
aaattcagaatgtcctaattgtaataggatgttttatgcacaatgta |
19260486 |
T |
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