View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15644_low_34 (Length: 237)
Name: NF15644_low_34
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20459788 - 20460008
Alignment:
| Q |
1 |
tatataaattcaatttggactattcaacaataatatattattacacctatgtataatttaaagcatagtttttggttcgatggagacaaaagcatctttt |
100 |
Q |
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| T |
20459788 |
tatataaattcaatttggactattcaacaataatatattattacacctatgtataatttaaagcatagtttttggttcgatggagacaaaagcatctttt |
20459887 |
T |
|
| Q |
101 |
ttcgtctataaaatgcagcacgagagaaacgatttcatgcaacacgaatcctgaagcttgtaaaaaacaatcaattgtagctgcttctttggtgatatca |
200 |
Q |
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| T |
20459888 |
ttcgtctataaaatgcagcacgagagaaacgatttcatgcaacacgaatcctgaagctcgtaaaaaacaatcaattgtagctgcttctttggtgatatca |
20459987 |
T |
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| Q |
201 |
aacaatggctaatgcaaaact |
221 |
Q |
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| T |
20459988 |
aacaatggctaatgcaaaact |
20460008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 20471577 - 20471762
Alignment:
| Q |
25 |
caacaataatatattattacacctatgtataatttaaagcatagtttttggttcgatggagacaaaagcatcttttttcgtctataaaatgcagcacgag |
124 |
Q |
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| T |
20471577 |
caacaataatatattattacacccatgtttaattaaaagcgtagtttccggttcgatggagggaaaatcatcttattttgtctataaattgctgcatgat |
20471676 |
T |
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| Q |
125 |
agaaacgatttcatgcaacacgaatcctgaagcttgtaaa---aaacaatcaattgtagctgcttctttggtgatatcaaacaatg |
207 |
Q |
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| T |
20471677 |
agaaacgatttcatgcaacacgaatcctaaatctcataaaattaaacaaacatttgtagctgcttctttcttgagaacaaacaatg |
20471762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 20464438 - 20464534
Alignment:
| Q |
1 |
tatataaattcaatttggactattcaacaataatatattattacacctatgtataatttaaagcatagtttttggttcgatggagacaaaagcatctt |
98 |
Q |
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| T |
20464438 |
tatataacttgaatttggaccattcaacagtaatatattattgcacc-atgtctaattaaaatcgaagttttcatttcgatgaaggcaaaagcatctt |
20464534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 30636375 - 30636257
Alignment:
| Q |
97 |
ttttttcgtctataaaatgcagcacgagagaaacgatttcatgcaacacgaatcctgaagcttgtaaaaaacaatcaattgtagctgcttctttggtgat |
196 |
Q |
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| T |
30636375 |
tttttttgtgtataaattgctgcatgagagaaacgatttcatgcaacacaaattctaaagttcataaaaaacaaacaattgtagttggttctttcttgat |
30636276 |
T |
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| Q |
197 |
atcaaacaatggctaatgc |
215 |
Q |
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|||||||||||||| |||| |
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| T |
30636275 |
atcaaacaatggcttatgc |
30636257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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