View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15644_low_5 (Length: 665)
Name: NF15644_low_5
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15644_low_5 |
 | |
|
| [»] scaffold0070 (4 HSPs) |
| | |
|
| [»] scaffold0955 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 19 - 651
Target Start/End: Complemental strand, 25692826 - 25692192
Alignment:
| Q |
19 |
ttgtaacacatacattgataaacatctaaaagaagaa-cacatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25692826 |
ttgtaacacatacattgataaacatctaaaagaagaagcacatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagc |
25692727 |
T |
|
| Q |
118 |
atctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25692726 |
atctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcattgaaccgttgcctcatgacttatttgattttcgtaagtat |
25692627 |
T |
|
| Q |
218 |
ctatgcttttataatattgaagctgaagttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25692626 |
ctatgcttttataatattgaagctgaagttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcag |
25692527 |
T |
|
| Q |
318 |
cacatccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaatatgaaaaaatatagacataattcattttttaaaaatcttatttttc |
417 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25692526 |
cacatccattgcaatttcctcaacaagttcagcttctgttctgtttgtacaaatatggaaaaatatagacatacttcattttttaaaaatcttatttttc |
25692427 |
T |
|
| Q |
418 |
taatagctaatcaaataattttaatatgat-nnnnnnnnttacctgttgatggagcaatcccaccctgaatggttggctgcttctcccaaagcatccctc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25692426 |
taatagctaatcaaataattttaatatgataaaaaaaaattacctgttgatggagcaatcccaccctgaatggttggcttcttctcccaaagcatccctc |
25692327 |
T |
|
| Q |
517 |
catttttgcacaatattcattgtacttgcaaaacgctgctcatgcttaacaaatgcctcggcataacttcctaattggtgtcgaacatggaaaggatcaa |
616 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25692326 |
catttttgcacaatattcattgtactttcaaaacgctgctcatgcttaacaaatgcctcggcataacttcctaattggtgtcgaacatggaaaggatcaa |
25692227 |
T |
|
| Q |
617 |
cttcatagaaaactggatgtataatttgccctttg |
651 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| |
|
|
| T |
25692226 |
cttcatagaaaactggaagtataatttgccgtttg |
25692192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 25384478 - 25384125
Alignment:
| Q |
18 |
tttgtaacacatacattgataaacatctaaaagaagaa-cacatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaag |
116 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
25384478 |
tttgtaacacatacattgataaatatgtaaaagaagaagcacatttataatgcacctaaaatagtttttcataagcttctgaatctttcatatatgaaag |
25384379 |
T |
|
| Q |
117 |
catctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagta |
216 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
25384378 |
catctcatgagtcaaacgaagcatgcggacgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttagttgattttcataagta |
25384279 |
T |
|
| Q |
217 |
tctatgcttttataatattgaagctgaagttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgca |
316 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||| ||||||| |||| |||||||||| | |||| |||||||| |
|
|
| T |
25384278 |
tctatgcttttatagtattgtagctgaagttgtgcaagttgcactaatttagtaatttggtgatccagatcacgaacataaacatgtttcagcttttgca |
25384179 |
T |
|
| Q |
317 |
gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaa |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25384178 |
gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttatacaaa |
25384125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 25798771 - 25798558
Alignment:
| Q |
22 |
taacacatacattgataaacatctaaaagaagaac-acatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatc |
120 |
Q |
| |
|
|||||||||||||||| || || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25798771 |
taacacatacattgattaatatgtaaaagaagaaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatc |
25798672 |
T |
|
| Q |
121 |
tcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatcta |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25798671 |
tcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcttttatgcattgaaccgttgcctcatgacttacttgattttcgtaagtatcta |
25798572 |
T |
|
| Q |
221 |
tgcttttataatat |
234 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
25798571 |
tgctcttataatat |
25798558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 25488382 - 25488161
Alignment:
| Q |
22 |
taacacatacattgataaacatctaaaagaagaac-acatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatc |
120 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25488382 |
taacacatacattgataaatatgtaaaagaagaaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatt |
25488283 |
T |
|
| Q |
121 |
tcacgtgtcaaacgaagcatgc----ggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagta |
216 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25488282 |
tcacgtgtcaaacgaagcatgcatgcggacgcttctcttcatcttaagttctgttatgcgatgaaccgttgcctcatgacttacttgattttcgtaagta |
25488183 |
T |
|
| Q |
217 |
tctatgcttttataatattgaa |
238 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
25488182 |
tctatgctttgataatattgaa |
25488161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 398 - 651
Target Start/End: Complemental strand, 25384122 - 25383868
Alignment:
| Q |
398 |
ttttaaaaatcttatttttctaatagctaatcaaataattttaatatgatnnnnnnnn-ttacctgttgatggagcaatcccaccctgaatggttggctg |
496 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
25384122 |
ttttaaaaatcttaaatttccaatagttaatcaaataacattaatatgataaaaaacaattacctgttgatggagcaatctcacccagaatggttggctg |
25384023 |
T |
|
| Q |
497 |
cttctcccaaagcatccctccatttttgcacaatattcattgtacttgcaaaacgctgctcatgcttaacaaatgcctcggcataacttcctaattggtg |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
25384022 |
cttctcccaaagcatccctccatttttgcaaaacattcattgtacttccaaaacgctgctcatgtttaatgaatgcctcggcataacttcctaattggtg |
25383923 |
T |
|
| Q |
597 |
tcgaacatggaaaggatcaacttcatagaaaactggatgtataatttgccctttg |
651 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
25383922 |
tcgaacatgaaaaggatcaacttcatagaaaactggaagtatcatttgccctttg |
25383868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 413 - 632
Target Start/End: Complemental strand, 25645983 - 25645761
Alignment:
| Q |
413 |
ttttctaatagctaatcaaataattttaatatgatnnnnnnnn---ttacctgttgatggagcaatcccaccctgaatggttggctgcttctcccaaagc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
25645983 |
ttttctaatagctaatcaaataattttaatatgataaaaaaaaaaattacctgttgattgagcaatcccacccagaatggttggcaggttctcccaaagc |
25645884 |
T |
|
| Q |
510 |
atccctccatttttgcacaatattcattgtacttgcaaaacgctgctcatgcttaacaaatgcctcggcataacttcctaattggtgtcgaacatggaaa |
609 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25645883 |
atacctccatttttgcacaatattcattgtacttgcaaaacactgctcatgtttaatgaatgcctcagcataacttcctaattggtgtcgaacatggaaa |
25645784 |
T |
|
| Q |
610 |
ggatcaacttcatagaaaactgg |
632 |
Q |
| |
|
||||| |||||||| |||||||| |
|
|
| T |
25645783 |
ggatcgacttcataaaaaactgg |
25645761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 485 - 651
Target Start/End: Complemental strand, 25388691 - 25388525
Alignment:
| Q |
485 |
aatggttggctgcttctcccaaagcatccctccatttttgcacaatattcattgtacttgcaaaacgctgctcatgcttaacaaatgcctcggcataact |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25388691 |
aatggttggctgcttctcccaaagcatccctccatttttgcacaatattcattgtacttccaaaacgctgctcatgcttaacaaatgcctcaacataact |
25388592 |
T |
|
| Q |
585 |
tcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactggatgtataatttgccctttg |
651 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
25388591 |
tcctaattggtgtcaaacatggaaaggatcaacttcataaaaaactgggaatataatttgccctttg |
25388525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 25602836 - 25602698
Alignment:
| Q |
91 |
gcttctgaatcttccatgtatgaaagcatctcacgtgtcaaacgaagcatgcggatg-------cttctcttcatcttaagttcagttatgcgttgaacc |
183 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |||| |
|
|
| T |
25602836 |
gcttctgaatctttcatgtatgaaagcatctcacgtgtcaaacgaagcatgcagattgcagacacttctcttcatcttaagttctgttatgcgttcaacc |
25602737 |
T |
|
| Q |
184 |
gttgcctcatgacttacttgattttcgtaagtatctatg |
222 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
25602736 |
gttgcctcatgacaaactttattttcataagtatctatg |
25602698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 259 - 346
Target Start/End: Complemental strand, 25602696 - 25602609
Alignment:
| Q |
259 |
tctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcagcacatccatcgcaatttcctcaacaagtt |
346 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25602696 |
tctaatttagtaatttgttgatccaagtcaccaacataaagacgattcaaattttgcagcacatccattgcaatttcctcaacaagtt |
25602609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 395 - 477
Target Start/End: Complemental strand, 25389456 - 25389374
Alignment:
| Q |
395 |
attttttaaaaatcttatttttctaatagctaatcaaataattttaatatgatnnnnnnnnttacctgttgatggagcaatcc |
477 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
25389456 |
attttttaaaaatcttatttttctaatagtaaatcaaataacattaatatgataaaaaaaattacctgttgatggagcaatcc |
25389374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 466; Significance: 0; HSPs: 4)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 651
Target Start/End: Original strand, 19096 - 19728
Alignment:
| Q |
18 |
tttgtaacacatacattgataaacatctaaaagaagaa-cacatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaag |
116 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| ||||| || || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19096 |
tttgtaacacatacattaataaatatgtaaaaaaagaagcaaatttataacacaactaaaatagttttttataagcttctgaatcttccatgtatgaaaa |
19195 |
T |
|
| Q |
117 |
catctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
19196 |
catctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgtggaaccgttgactcatgacttacttaattttcgtaagta |
19295 |
T |
|
| Q |
217 |
tctatgcttttataatattgaagctgaagttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19296 |
tctatgcttttataatattgaagctgaagttgtgcaagttgctctagtatagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgca |
19395 |
T |
|
| Q |
317 |
gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaatatgaaaaaatatagacataattcattttttaaaaatcttattttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
19396 |
gcacatccatcgcaatttcctcaacaagttcagcttatgttctgtttgtacaaacatggaaaaatatagacatacttcattttttaaaaatctaattttt |
19495 |
T |
|
| Q |
417 |
ctaatagctaatcaaataattttaatatgatnnnnnnnnttacctgttgatggagcaatcccaccctgaatggttggctgcttctcccaaagcatccctc |
516 |
Q |
| |
|
||||||| ||||||||||| ||| ||| || | ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
19496 |
ctaatagttaatcaaataactttcatacaat--aaaaaataacctgttgatggagcaatcccacccagaatggttggctgcttttcccaaagcatccctc |
19593 |
T |
|
| Q |
517 |
catttttgcacaatattcattgtacttgcaaaacgctgctcatgcttaacaaatgcctcggcataacttcctaattggtgtcgaacatggaaaggatcaa |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19594 |
catttttgcacaatattcattgtacttgcaaaacgctgctcatgcttaacaaatgcctcagcataacttcctaattggtgtcgaacatggaaaggatcga |
19693 |
T |
|
| Q |
617 |
cttcatagaaaactggatgtataatttgccctttg |
651 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |
|
|
| T |
19694 |
cttcatagaaaactggcactataatttaccctttg |
19728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 22 - 401
Target Start/End: Original strand, 38497 - 38866
Alignment:
| Q |
22 |
taacacatacattgataaacatctaaaagaagaac-acatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatc |
120 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38497 |
taacacatccattgataaatatgtaaaagaagaaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatc |
38596 |
T |
|
| Q |
121 |
tcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatcta |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38597 |
tcacgtgtcaaacgaagcatgcggacgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatcta |
38696 |
T |
|
| Q |
221 |
tgcttttataatattgaagctgaagttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcagcac |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | | || ||| || |||||||||||||||| |
|
|
| T |
38697 |
tgcttttataatattgaagctgaagttgtgcaagttgctctaatttaataatttg-----------ctctaatttaatattgaatcaacttttgcagcac |
38785 |
T |
|
| Q |
321 |
atccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaatatgaaaaaatatagacataattcatttttt |
401 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||| |||||| |
|
|
| T |
38786 |
acccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaacatggaaaaatataaacatacttcttttttt |
38866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 391 - 632
Target Start/End: Original strand, 38976 - 39224
Alignment:
| Q |
391 |
attcattttttaaaaatcttatttttc----taatagctaatcaaataattttaatatgatnnnnnnnn--ttacctgttgatggagcaatcccaccctg |
484 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||| | |
|
|
| T |
38976 |
attcattttttaaaaatcttattttttaaaataatagttaatcaaataacattaatatgataatagaaaagttacctgttgatggagcaatgccacccag |
39075 |
T |
|
| Q |
485 |
aatggttggctgcttctcccaaagcatccctccatttttgcacaatattcattgtacttgcaaaacgctgctcatgcttaacaaatgcctcggcat-aac |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
39076 |
aatggttggctgcttctcccaaagcatccctccatttttgcaaaatattcattgtacttccaaaacgctgctcatgcttaacaaatgcctcagcataaac |
39175 |
T |
|
| Q |
584 |
ttcctaattggtgtcgaacatggaaaggatcaacttcatagaaaactgg |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39176 |
ttcctaattggtgtcgaacatggaaaggatcaacttcataaaaaactgg |
39224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 19031 - 19098
Alignment:
| Q |
18 |
tttgtaacacatacattgataaacatctaaaagaagaa-cacatctataatgcaactaaaatagtttt |
84 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19031 |
tttgtaacacatacattgataaacatgtaaaagaagaagcacatctataatgcaactaaaatagtttt |
19098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 47 - 401
Target Start/End: Complemental strand, 3918 - 3574
Alignment:
| Q |
47 |
aaagaagaac-acatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatctcacgtgtcaaacgaagcatgcgga |
145 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3918 |
aaagaagaaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatctcacgtgtcaaacgaagcatgtgga |
3819 |
T |
|
| Q |
146 |
tgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatctatgcttttataatattgaagctgaag |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3818 |
tgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatctatgcttttataatattgaagctgaag |
3719 |
T |
|
| Q |
246 |
ttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcagcacatccatcgcaatttcctcaacaagt |
345 |
Q |
| |
|
||||||||||||||||| |||| ||||||| | | || ||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3718 |
ttgtgcaagttgctctaatttaataatttg-----------ctctaatttaatattgaatcaacttttgcagcacatccatcgcaatttcctcaacaagt |
3630 |
T |
|
| Q |
346 |
tcagcttctgttctgtttgtacaaatatgaaaaaatatagacataattcatttttt |
401 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||| ||||| ||| |||||| |
|
|
| T |
3629 |
tcagcttctgttctgtttgtacaaacatggaaaaatataaacatacttcttttttt |
3574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 391 - 651
Target Start/End: Complemental strand, 3465 - 3202
Alignment:
| Q |
391 |
attcattttttaaaaatcttatttttctaatagctaatcaaataattttaatatgatnnnnnnnn--ttacctgttgatggagcaatcccaccctgaatg |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
3465 |
attcattttttaaaaatcttatttttctaatagttaatcaaataacattaatatgataataaaaaagttacctgttgatggagcaatcccacccagaatg |
3366 |
T |
|
| Q |
489 |
gttggctgcttctcccaaagcatccctccatttttgcacaatattcattgtacttgcaaaacgctgctcatgcttaacaaatgcctcggcat-aacttcc |
587 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
3365 |
gttggctgcttctcccaaagcatccctctatttttgcaaaatattcattgtacttccaaaacgctgctcatgcttaacaaatgcctcagcataaacttcc |
3266 |
T |
|
| Q |
588 |
taattggtgtcgaacatggaaaggatcaacttcatagaaaactggatgtataatttgccctttg |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||| |
|
|
| T |
3265 |
taattggtgtcgaacatggaaaggatcaacttcataaaaatctggcaatataatttgctctttg |
3202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 20592127 - 20591918
Alignment:
| Q |
20 |
tgtaacacatacattgataaacatctaaaagaagaa-cacatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagca |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20592127 |
tgtaacacatacattgataaacatgtaaaagaagaagcacatctataatgcaactaaaatagtttt-cataagcttctgaatcttccatgtatgaaagca |
20592029 |
T |
|
| Q |
119 |
tctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
20592028 |
tctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttctattatacgttcaaccgttgcgtcatgacttacttgattttcataagtatc |
20591929 |
T |
|
| Q |
219 |
tatgcttttat |
229 |
Q |
| |
|
||||||||||| |
|
|
| T |
20591928 |
tatgcttttat |
20591918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 16499164 - 16499236
Alignment:
| Q |
277 |
tgatccaagtcaccaacataaacacgattcaacttttgcagcacatccatcgcaatttcctcaacaagttcag |
349 |
Q |
| |
|
||||| ||||||||||||||||| ||||| || |||| || |||||| ||||||||| ||||| |||||||| |
|
|
| T |
16499164 |
tgatctaagtcaccaacataaactcgatttaatttttccaatacatccttcgcaattttctcaagaagttcag |
16499236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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