View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15644_low_7 (Length: 615)

Name: NF15644_low_7
Description: NF15644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15644_low_7
NF15644_low_7
[»] chr2 (1 HSPs)
chr2 (425-599)||(32162454-32162628)
[»] chr4 (1 HSPs)
chr4 (467-592)||(10494392-10494517)
[»] chr5 (1 HSPs)
chr5 (427-553)||(18251822-18251948)
[»] chr6 (3 HSPs)
chr6 (464-592)||(34374282-34374410)
chr6 (455-572)||(11191577-11191694)
chr6 (485-535)||(10084610-10084660)
[»] chr8 (1 HSPs)
chr8 (464-592)||(2688646-2688767)
[»] chr7 (1 HSPs)
chr7 (429-592)||(11228093-11228256)
[»] chr3 (1 HSPs)
chr3 (505-592)||(3064226-3064313)
[»] chr1 (1 HSPs)
chr1 (17-60)||(44047911-44047954)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 425 - 599
Target Start/End: Complemental strand, 32162628 - 32162454
Alignment:
Q  425 actgaaacaatcggatcttcaatcaccaccgctgctgtagaagaaaccactggatcgatgtgttgttacagatatcgactaaccatctgattatgttact 524  Q
    |||||||||| ||| |||||||||||||||| |||||  |||||||||| |||||||| ||||||||| || |||| || |||||||||||||||||| |    
T  32162628 actgaaacaaccgggtcttcaatcaccaccggtgctgctgaagaaaccattggatcgacgtgttgttataggtatcaaccaaccatctgattatgttaat 32162529  T
Q  525 ttacagaaattcccactcctcacggattgcttatctagtactacgattaaagtcgaggctaaaatgattggtcta 599  Q
    ||||||||||||||||| |||| |||||| | |||||||||||||||||||||| ||| ||||||||||||||||    
T  32162528 ttacagaaattcccactactcatggattggtcatctagtactacgattaaagtctaggttaaaatgattggtcta 32162454  T

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Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 467 - 592
Target Start/End: Original strand, 10494392 - 10494517
Alignment:
Q  467 gaaaccactggatcgatgtgttgttacagatatcgactaaccatctgattatgttactttacagaaattcccactcctcacggattgcttatctagtact 566  Q
    |||||||||||||||| |||||| || || ||||||| ||||||||||||||||||||||||| |||||| |||  ||||||||||| | |||||||||     
T  10494392 gaaaccactggatcgacgtgttgctataggtatcgaccaaccatctgattatgttactttacaaaaattcacaccactcacggattggtcatctagtacc 10494491  T
Q  567 acgattaaagtcgaggctaaaatgat 592  Q
    | ||||||||||||||||||||||||    
T  10494492 atgattaaagtcgaggctaaaatgat 10494517  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 427 - 553
Target Start/End: Original strand, 18251822 - 18251948
Alignment:
Q  427 tgaaacaatcggatcttcaatcaccaccgctgctgtagaagaaaccactggatcgatgtgttgttacagatatcgactaaccatctgattatgttacttt 526  Q
    |||||| ||||  ||||||||||||||||| ||||   |||||||||||||||||||||| || ||||| |||| || |||||||||||||| |||||||    
T  18251822 tgaaaccatcgagtcttcaatcaccaccgccgctgccaaagaaaccactggatcgatgtgatgctacaggtatcaaccaaccatctgattatattacttt 18251921  T
Q  527 acagaaattcccactcctcacggattg 553  Q
    ||| ||||||||||  || ||||||||    
T  18251922 acaaaaattcccaccacttacggattg 18251948  T

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Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 464 - 592
Target Start/End: Complemental strand, 34374410 - 34374282
Alignment:
Q  464 gaagaaaccactggatcgatgtgttgttacagatatcgactaaccatctgattatgttactttacagaaattcccactcctcacggattgcttatctagt 563  Q
    ||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||| |||||||||| |||||  |||  ||||  || |  | || ||||    
T  34374410 gaagaaaccaccggatcgacgtgttgctacagatatcgaccaaccatctgattatattactttacaaaaatttacaccactcagtgaattgtcatttagt 34374311  T
Q  564 actacgattaaagtcgaggctaaaatgat 592  Q
    |||| |||||||||||||| |||||||||    
T  34374310 actatgattaaagtcgaggttaaaatgat 34374282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 455 - 572
Target Start/End: Original strand, 11191577 - 11191694
Alignment:
Q  455 gctgctgtagaagaaaccactggatcgatgtgttgttacagatatcgactaaccatctgattatgttactttacagaaattcccactcctcacggattgc 554  Q
    |||| ||| ||||||||||| |||||||| |||||||| || ||||||| ||| |||||||||||||| |||||| |||||  |||  |||| ||||||     
T  11191577 gctgttgtcgaagaaaccaccggatcgatatgttgttatagttatcgaccaacaatctgattatgttattttacaaaaattgtcaccactcatggattgg 11191676  T
Q  555 ttatctagtactacgatt 572  Q
    | ||||||||| ||||||    
T  11191677 tcatctagtaccacgatt 11191694  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 535
Target Start/End: Original strand, 10084610 - 10084660
Alignment:
Q  485 tgttgttacagatatcgactaaccatctgattatgttactttacagaaatt 535  Q
    ||||||||||| ||||||| |||||| ||||||||||| |||||| |||||    
T  10084610 tgttgttacaggtatcgaccaaccatttgattatgttattttacaaaaatt 10084660  T

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Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 464 - 592
Target Start/End: Original strand, 2688646 - 2688767
Alignment:
Q  464 gaagaaaccactggatcgatgtgttgttacagatatcgactaaccatctgattatgttactttacagaaattcccactcctcacggattgcttatctagt 563  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||||  ||||||||||||||||| ||    |||   ||||| ||||| | ||||||     
T  2688646 gaagaaaccactggatcgacgtgttgctacagatatcgaccaaccatacgattatgttactttacaaaa----cca---ctcacagattggtcatctaga 2688738  T
Q  564 actacgattaaagtcgaggctaaaatgat 592  Q
    || ||||||| ||||||||||||||||||    
T  2688739 accacgattatagtcgaggctaaaatgat 2688767  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 592
Target Start/End: Original strand, 11228093 - 11228256
Alignment:
Q  429 aaacaatcggatcttcaatcaccaccgctgctgtagaagaaaccactggatcgatgtgttgttacagatatcgactaaccatctgattatgttactttac 528  Q
    |||| ||| ||||||||||||||||||| ||||  |||||||||||| ||| ||||||||| ||||  |||||||  ||| ||||||||  |||||||||    
T  11228093 aaaccatcagatcttcaatcaccaccgccgctgccgaagaaaccactagattgatgtgttgctacaagtatcgacccaccctctgattacattactttac 11228192  T
Q  529 agaaattcccactcctcacggattgcttatctagtactacgattaaagtcgaggctaaaatgat 592  Q
    | |||||| |||  |||| ||||   | ||||||||    |||||||||| |||||||||||||    
T  11228193 aaaaattcacaccactcaaggatgtgtcatctagtatccggattaaagtcaaggctaaaatgat 11228256  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 505 - 592
Target Start/End: Complemental strand, 3064313 - 3064226
Alignment:
Q  505 aaccatctgattatgttactttacagaaattcccactcctcacggattgcttatctagtactacgattaaagtcgaggctaaaatgat 592  Q
    |||||| |||||||||||||||||| ||||| ||||  |||| |||||| | | ||||||| ||||||||| |||| |||||||||||    
T  3064313 aaccatttgattatgttactttacaaaaatttccacaactcaaggattggtcacctagtaccacgattaaattcgaagctaaaatgat 3064226  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 44047911 - 44047954
Alignment:
Q  17 agcagtgaatactagtttgaaggattcaaatgcttctgatatag 60  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  44047911 agcactgaatattagtttgaaggattcaaatgcttctgatatag 44047954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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