View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15645_low_2 (Length: 325)

Name: NF15645_low_2
Description: NF15645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15645_low_2
NF15645_low_2
[»] chr3 (2 HSPs)
chr3 (20-313)||(45382612-45382906)
chr3 (156-202)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (127-207)||(27661703-27661783)
chr6 (170-207)||(26650237-26650274)
chr6 (170-207)||(26756205-26756242)
chr6 (171-211)||(12627824-12627864)
chr6 (167-207)||(29449688-29449728)
chr6 (232-282)||(8148268-8148318)
chr6 (226-279)||(20809178-20809231)
chr6 (178-207)||(28783014-28783043)
chr6 (168-225)||(34057962-34058019)
chr6 (245-281)||(29670971-29671007)
chr6 (168-204)||(30537508-30537544)
chr6 (231-279)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (167-207)||(43160491-43160531)
chr7 (169-216)||(10893872-10893919)
chr7 (165-207)||(650524-650566)
chr7 (171-207)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (168-207)||(28136673-28136712)
chr5 (170-207)||(645342-645379)
chr5 (171-216)||(11601688-11601733)
chr5 (231-279)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (232-274)||(14229600-14229642)
chr8 (167-207)||(32691750-32691790)
chr8 (168-216)||(41686804-41686852)
chr8 (168-216)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (165-261)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (157-207)||(10164460-10164510)
chr4 (169-207)||(28890768-28890806)
chr4 (175-211)||(29388374-29388410)
chr4 (167-207)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (171-216)||(264615-264660)
chr1 (227-267)||(27835482-27835522)
chr1 (171-207)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 45382612 - 45382906
Alignment:
Q  20 aatacaatctggtttggctgtaagtttatttcatacctgatttataagtttatttttccactcatttttcattatctatgaagcactgacatgaacacca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||          |    
T  45382612 aatacaatctggtttggctgtaagtttatttcatacctgatttataagtttatttttccactcatttttcgttatctatgaagcactga---------ga 45382702  T
Q  120 gagacatgaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat-----------a 208  Q
    ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |    
T  45382703 gagacatgaacactggacttcacactgacattcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacatatgtcggtgaca 45382802  T
Q  209 tgttggtgacagacacagacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttcattatttaccaattagtcacttcctt 308  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||||    
T  45382803 tgttggtgtcagacacagacaaatgtcggacaccggacatgccttcgatcagaagtat-tgtgctacaaagttcattatttaccaattagtcaattcctt 45382901  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 47362558 - 47362604
Alignment:
Q  156 cgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaat 202  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||    
T  47362558 cgtcaacatcagtaataatttaagaaaattacataattgaatgtaat 47362604  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 27661703 - 27661783
Alignment:
Q  127 gaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    |||||||| |||| ||||| ||||| ||||||||||||   ||||||||||||||||||| |||||| |||||||||||||    
T  27661703 gaacaccgaactcgacactaacactgattcgtcaacattgatagtaatttaagaaaataatatatttcaatgtaatcacat 27661783  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 26650274 - 26650237
Alignment:
Q  170 gtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650274 gtaatttaagaaaataacatatttgaatgtaatcacat 26650237  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 26756242 - 26756205
Alignment:
Q  170 gtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756242 gtaatttaagaaaataacatatttgaatgtaatcacat 26756205  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 12627864 - 12627824
Alignment:
Q  171 taatttaagaaaataacatatttgaatgtaatcacatatgt 211  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  12627864 taatttaagaaaataacatatttcaatgtaatcatatatgt 12627824  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 29449688 - 29449728
Alignment:
Q  167 gtagtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  29449688 gtagtaatttcagaaaataacataattgaatgtaatcacat 29449728  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 8148318 - 8148268
Alignment:
Q  232 tgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttc 282  Q
    ||||||||||| ||||||||||| ||| |||||||| |||||||| |||||    
T  8148318 tgtcggacaccagacatgccttccatcggaaatgtcggtgctacatagttc 8148268  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 20809231 - 20809178
Alignment:
Q  226 gacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 279  Q
    |||| ||||||||||||||||||||||||||||  || ||||  ||||||||||    
T  20809231 gacacatgtcggacaccggacatgccttcgatccaaagtgtcgatgctacaaag 20809178  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 28783043 - 28783014
Alignment:
Q  178 agaaaataacatatttgaatgtaatcacat 207  Q
    ||||||||||||||||||||||||||||||    
T  28783043 agaaaataacatatttgaatgtaatcacat 28783014  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 34057962 - 34058019
Alignment:
Q  168 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacaca 225  Q
    ||||||| ||||||||| ||||| |||| ||||||||||| ||| |||| ||||||||    
T  34057962 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacaca 34058019  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 29670971 - 29671007
Alignment:
Q  245 acatgccttcgatcagaaatgtctgtgctacaaagtt 281  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  29670971 acatgccttcgatcagaaatgtcggtggtacaaagtt 29671007  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 30537508 - 30537544
Alignment:
Q  168 tagtaatttaagaaaataacatatttgaatgtaatca 204  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  30537508 tagtaatttaagaaaataacataattgaatgttatca 30537544  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 31811989 - 31812037
Alignment:
Q  231 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 279  Q
    ||||||||||| ||||||||||| |||||||  |||| |||||||||||    
T  31811989 atgtcggacactggacatgcctttgatcagaggtgtcagtgctacaaag 31812037  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 43160491 - 43160531
Alignment:
Q  167 gtagtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43160491 gtagtaatttaagaaaataacataattgaatgtaatcacat 43160531  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 10893919 - 10893872
Alignment:
Q  169 agtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 216  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  10893919 agtaatttaagaaaatgacataattgaatgtaatcacatgtgttggtg 10893872  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 650524 - 650566
Alignment:
Q  165 cagtagtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||    
T  650524 cagtagtaatttaagaaaatgacataattgaatgcaatcacat 650566  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 18750887 - 18750923
Alignment:
Q  171 taatttaagaaaataacatatttgaatgtaatcacat 207  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  18750887 taatttaagaaaatgacataattgaatgtaatcacat 18750923  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 28136673 - 28136712
Alignment:
Q  168 tagtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28136673 tagtaatttaagaaaataacatatttcaatgtaatcacat 28136712  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 645342 - 645379
Alignment:
Q  170 gtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  645342 gtaatttaagaaaatgacataattgaatgtaatcacat 645379  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 11601688 - 11601733
Alignment:
Q  171 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 216  Q
    |||||||||||| |||  || |||||||||||||||||||||||||    
T  11601688 taatttaagaaactaaattaattgaatgtaatcacatatgttggtg 11601733  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 12478334 - 12478382
Alignment:
Q  231 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 279  Q
    ||||| |||||| |||| |||||| |||||||||||| |||||||||||    
T  12478334 atgtcagacaccagacacgccttccatcagaaatgtcggtgctacaaag 12478382  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 14229600 - 14229642
Alignment:
Q  232 tgtcggacaccggacatgccttcgatcagaaatgtctgtgcta 274  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  14229600 tgtcggacaccggacatgccttcgatcagaagtgtcagtgcta 14229642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 32691750 - 32691790
Alignment:
Q  167 gtagtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  32691750 gtagtaatttaagaaaatgacataattgaatgtaatcacat 32691790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 41686852 - 41686804
Alignment:
Q  168 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 216  Q
    ||||||||||||||||||||||| |||| | ||||||||| ||||||||    
T  41686852 tagtaatttaagaaaataacatagttgagtctaatcacatgtgttggtg 41686804  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 31681881 - 31681833
Alignment:
Q  168 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 216  Q
    ||||||||||||||||| ||||| ||||||| |||||||| ||| ||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtg 31681833  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 9957045 - 9956949
Alignment:
Q  165 cagtagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacacagacaaatgtcggacaccggacatgccttcgatcaga 261  Q
    ||||| |||||| | |||||||  |||||||| ||||| |||| |||  ||| | ||||| |||| ||||| ||||||||||||||||| |||||||    
T  9957045 cagtaataatttgacaaaataaattatttgaacgtaatgacatgtgtccgtgccggacaccgacacatgtcagacaccggacatgcctttgatcaga 9956949  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 10164460 - 10164510
Alignment:
Q  157 gtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    ||||||| | ||||||||||||||||||  |||| ||||||||||||||||    
T  10164460 gtcaacaccggtagtaatttaagaaaatggcataattgaatgtaatcacat 10164510  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 28890768 - 28890806
Alignment:
Q  169 agtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  28890768 agtaatttaagaaaataacataattgaatgcaatcacat 28890806  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 29388410 - 29388374
Alignment:
Q  175 ttaagaaaataacatatttgaatgtaatcacatatgt 211  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  29388410 ttaagaaaatgacataattgaatgtaatcacatatgt 29388374  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 45615467 - 45615427
Alignment:
Q  167 gtagtaatttaagaaaataacatatttgaatgtaatcacat 207  Q
    |||||||||||||||||| ||||| ||||| ||||||||||    
T  45615467 gtagtaatttaagaaaatgacataattgaacgtaatcacat 45615427  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 264615 - 264660
Alignment:
Q  171 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 216  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||    
T  264615 taatttaagaaagtaacatacttaaatgtaatcacatgtgttggtg 264660  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 27835482 - 27835522
Alignment:
Q  227 acaaatgtcggacaccggacatgccttcgatcagaaatgtc 267  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  27835482 acaaatgtcggacaccagacatgccttcaatcagaagtgtc 27835522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 43609866 - 43609830
Alignment:
Q  171 taatttaagaaaataacatatttgaatgtaatcacat 207  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  43609866 taatttgagaaaataacataattgaatgtaatcacat 43609830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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