View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15645_low_3 (Length: 276)

Name: NF15645_low_3
Description: NF15645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15645_low_3
NF15645_low_3
[»] chr5 (1 HSPs)
chr5 (17-261)||(40088270-40088514)
[»] chr1 (4 HSPs)
chr1 (50-251)||(25466484-25466696)
chr1 (143-261)||(25477010-25477128)
chr1 (204-239)||(39831881-39831916)
chr1 (90-118)||(6755472-6755500)
[»] chr4 (4 HSPs)
chr4 (136-261)||(54186845-54186970)
chr4 (136-235)||(8571954-8572053)
chr4 (73-122)||(8572077-8572126)
chr4 (73-122)||(54186772-54186821)
[»] chr6 (2 HSPs)
chr6 (138-261)||(30948671-30948794)
chr6 (49-122)||(30948902-30948975)
[»] chr3 (2 HSPs)
chr3 (136-235)||(28697914-28698013)
chr3 (73-122)||(28698037-28698086)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 40088270 - 40088514
Alignment:
Q  17 agtttgatgacctgatgttaataaccgctcgccaaaatacatttagactgaccatgaaaataacagttatagaaatatcaaatcatgaactcagtaaaca 116  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40088270 agtttgatgacctgatgttaataaccgctcgccaaaatacgtttagactgaccatgaaaataacagttatggaaatatcaaatcatgaactcagtaaaca 40088369  T
Q  117 gtctaattaaatagttctacaatactttttgaagcaggaatgttataaaaatttacctcaaaatccccaatgttgagctcatcaagcaattcagtcaaaa 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40088370 gtctaattaaataattctacaatactttttgaagcaggaatgttataaaaatttacctcaaaatccccaatgttgagctcatcaagcaattcagtcaaaa 40088469  T
Q  217 ttctaacaacctcaaaatctggagccattttttcatatgaaccag 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40088470 ttctaacaacctcaaaatctggagccattttttcatatgaaccag 40088514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 50 - 251
Target Start/End: Original strand, 25466484 - 25466696
Alignment:
Q  50 aaaatacatttagactgaccatgaaaa-taacagttatagaaatatcaaatcatgaactcagtaaacagtctaattaaatagttctacaa---------- 138  Q
    ||||||||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||    ||||||||||||              
T  25466484 aaaatacatatagacagaccatgaaaaataacggttatagaaatatcaaatcatgaactcagtaaaaagtctaa----atagttctacaaattcagaaaa 25466579  T
Q  139 ----tactttttgaagcaggaatgttataaaaatttacctcaaaatccccaatgttgagctcatcaagcaattcagtcaaaattctaacaacctcaaaat 234  Q
        ||||||||| |||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25466580 ccaatactttttgtagcagggatgttataaacatttacctcaaaatccccaatgttcagctcatcaagcaattcagtcaaaattctaacaacctcaaaat 25466679  T
Q  235 ctggagccattttttca 251  Q
    |||||||||||||||||    
T  25466680 ctggagccattttttca 25466696  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 25477010 - 25477128
Alignment:
Q  143 ttttgaagcaggaatgttataaaaatttacctcaaaatccccaatgttgagctcatcaagcaattcagtcaaaattctaacaacctcaaaatctggagcc 242  Q
    ||||| |||||||  |||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25477010 ttttgcagcaggagagttataaaaatttacctcaaaatccccaattttcagctcatcaagcaattaagtcaaaattctaacaacctcaaaatctggagcc 25477109  T
Q  243 attttttcatatgaaccag 261  Q
    ||| || || |||||||||    
T  25477110 attgttgcagatgaaccag 25477128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 39831916 - 39831881
Alignment:
Q  204 aattcagtcaaaattctaacaacctcaaaatctgga 239  Q
    |||| |||||||||||||||||||||||||||||||    
T  39831916 aattaagtcaaaattctaacaacctcaaaatctgga 39831881  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 6755500 - 6755472
Alignment:
Q  90 aatatcaaatcatgaactcagtaaacagt 118  Q
    |||||||||||||||||||||||||||||    
T  6755500 aatatcaaatcatgaactcagtaaacagt 6755472  T

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Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 136 - 261
Target Start/End: Original strand, 54186845 - 54186970
Alignment:
Q  136 caatactttttgaagcaggaatgttataaaaatttacctcaaaatccccaatgttgagctcatcaagcaattcagtcaaaattctaacaacctcaaaatc 235  Q
    ||||| |||||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||    
T  54186845 caataatttttgtagcaggaatgttataaaagtttacctccaaatccccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcaaaatc 54186944  T
Q  236 tggagccattttttcatatgaaccag 261  Q
    |||||||||||||| | |||||||||    
T  54186945 tggagccatttttttagatgaaccag 54186970  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 8572053 - 8571954
Alignment:
Q  136 caatactttttgaagcaggaatgttataaaaatttacctcaaaatccccaatgttgagctcatcaagcaattcagtcaaaattctaacaacctcaaaatc 235  Q
    ||||| |||||| |||||||||||||||||| |||||||| ||||| |||||||| ||||||||||  |||| |||||||||||||||||||||||||||    
T  8572053 caataatttttgtagcaggaatgttataaaagtttacctccaaatcaccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcaaaatc 8571954  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 8572126 - 8572077
Alignment:
Q  73 aaaataacagttatagaaatatcaaatcatgaactcagtaaacagtctaa 122  Q
    ||||| |||| |||||| |||||||||||||||||| | |||||||||||    
T  8572126 aaaattacagatatagatatatcaaatcatgaactcgggaaacagtctaa 8572077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 54186772 - 54186821
Alignment:
Q  73 aaaataacagttatagaaatatcaaatcatgaactcagtaaacagtctaa 122  Q
    ||||| |||| |||||| |||||||||||||||||| | |||||||||||    
T  54186772 aaaattacagatatagatatatcaaatcatgaactcgggaaacagtctaa 54186821  T

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Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 30948794 - 30948671
Alignment:
Q  138 atactttttgaagcaggaatgttataaaaatttacctcaaaatccccaatgttgagctcatcaagcaattcagtcaaaattctaacaacctcaaaatctg 237  Q
    |||||||||  |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||||||||||||||| |||||||    
T  30948794 atactttttatagcatgaatgttttaaaaatttacctcaaaatccccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcgaaatctg 30948695  T
Q  238 gagccattttttcatatgaaccag 261  Q
    |||||||||||||| |||||||||    
T  30948694 gagccattttttcacatgaaccag 30948671  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 30948975 - 30948902
Alignment:
Q  49 caaaatacatttagactgaccatgaaaataacagttatagaaatatcaaatcatgaactcagtaaacagtctaa 122  Q
    |||||||| | ||||  ||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||    
T  30948975 caaaatacgtatagatagaccatgaaaataacagatatagatatatcaaatcatgaactcagcaaacagtctaa 30948902  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 28698013 - 28697914
Alignment:
Q  136 caatactttttgaagcaggaatgttataaaaatttacctcaaaatccccaatgttgagctcatcaagcaattcagtcaaaattctaacaacctcaaaatc 235  Q
    ||||| |||||| |||||||||||||||||| |||||||| ||||| |||||||| ||||||||||  |||| |||||||||||||||||||||||||||    
T  28698013 caataatttttgtagcaggaatgttataaaagtttacctccaaatcaccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcaaaatc 28697914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 28698086 - 28698037
Alignment:
Q  73 aaaataacagttatagaaatatcaaatcatgaactcagtaaacagtctaa 122  Q
    ||||| |||| |||||| |||||||||||||||||| | |||||||||||    
T  28698086 aaaattacagatatagatatatcaaatcatgaactcgggaaacagtctaa 28698037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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