View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15645_low_4 (Length: 262)
Name: NF15645_low_4
Description: NF15645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15645_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 16592807 - 16592569
Alignment:
| Q |
16 |
taattttcttaattagggcatttgggttcaaatgcaagaggtttgacattgtagagaatgagattgtgagccttagacctaaatgatttcttgtgcttaa |
115 |
Q |
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| T |
16592807 |
taattttcttaattagtgcatttgggctcaaatgcaagaggtttgacattgtagagaatgagattgtgagccttagacacaaatgatttcttgtgcttaa |
16592708 |
T |
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| Q |
116 |
tacgagcaccggtgataccaccattaagatttgagggctttaatccatttggtgcactaaccaatacaacattacacttgtgaactgcaaatattgagat |
215 |
Q |
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| T |
16592707 |
tacgagcaccggtgataccaccattaatatttgagggctttaatccatttggtgcactaaccaatacaacattacacttgtgaactgcaaaaattgagat |
16592608 |
T |
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| Q |
216 |
gtcctttggacctttgatatagaaataaccattcatatc |
254 |
Q |
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| T |
16592607 |
gtcctttggacctttgatatagaaataaccgttcttatc |
16592569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 16603361 - 16603122
Alignment:
| Q |
15 |
ataattttcttaattagggcatttgggttcaaatgcaagaggtttgacattgtagagaatgagattgtgagccttagacctaaatgatttcttgtgctta |
114 |
Q |
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| T |
16603361 |
ataattttcttaatgagtgcatttgggttcaaatgcaagaggtttgacattgtagagaatgagaacgtgacccttagacacaaatgatttcttgcgctta |
16603262 |
T |
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| Q |
115 |
atacgagcaccggtgataccaccattaagatttgagggctttaatccatttggtgcactaaccaatacaacattacacttgtgaactgcaaatattgaga |
214 |
Q |
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| T |
16603261 |
agaacagcaccagtgacaccaccatgaagatttgagggctttaatccatttggtgcactatccaatacaacattacacttgtgagctgcaaaacttgaga |
16603162 |
T |
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| Q |
215 |
tgtcctttggacctttgatatagaaataaccattcatatc |
254 |
Q |
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| T |
16603161 |
tgtcctttgagcctttgatatagaaataaccgttcttatc |
16603122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 254
Target Start/End: Original strand, 35334559 - 35334692
Alignment:
| Q |
121 |
gcaccggtgataccaccattaagatttgagggctttaatccatttggtgcactaaccaatacaacattacacttgtgaactgcaaatattgagatgtcct |
220 |
Q |
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| T |
35334559 |
gcacccgtgataccgccatgaagatttgagggctttagtccatttggtgcactgaccaatacaacattacacttgcgagctgcatagcttgagatgttat |
35334658 |
T |
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| Q |
221 |
ttggacctttgatatagaaataaccattcatatc |
254 |
Q |
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| T |
35334659 |
ttgagcctttaatatagaaataaccgttcttatc |
35334692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 14674222 - 14674291
Alignment:
| Q |
119 |
gagcaccggtgataccaccattaagatttgagggctttaatccatttggtgcactaaccaatacaacatt |
188 |
Q |
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| T |
14674222 |
gagcaccggtgagaccaccatgaagatttgatggttttagtccatttggtgcactctccaaaacaacatt |
14674291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 41522295 - 41522348
Alignment:
| Q |
132 |
accaccattaagatttgagggctttaatccatttggtgcactaaccaatacaac |
185 |
Q |
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| T |
41522295 |
accaccatgaagatttgagggttttagtccatttgatgcactatccaaaacaac |
41522348 |
T |
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