View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15645_low_5 (Length: 246)

Name: NF15645_low_5
Description: NF15645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15645_low_5
NF15645_low_5
[»] chr4 (3 HSPs)
chr4 (9-246)||(49269536-49269781)
chr4 (9-43)||(5680481-5680515)
chr4 (9-43)||(14571038-14571072)
[»] chr1 (2 HSPs)
chr1 (176-246)||(2097702-2097772)
chr1 (9-55)||(29644262-29644308)
[»] scaffold1993 (1 HSPs)
scaffold1993 (9-55)||(1045-1091)
[»] scaffold0015 (1 HSPs)
scaffold0015 (9-55)||(197242-197288)
[»] chr3 (3 HSPs)
chr3 (9-55)||(16185610-16185656)
chr3 (9-56)||(16243165-16243212)
chr3 (9-58)||(54460364-54460413)
[»] chr6 (2 HSPs)
chr6 (9-57)||(9953034-9953082)
chr6 (9-57)||(28666130-28666178)
[»] chr7 (2 HSPs)
chr7 (9-56)||(8276011-8276058)
chr7 (9-57)||(9865596-9865644)
[»] scaffold0005 (1 HSPs)
scaffold0005 (9-43)||(246304-246338)
[»] chr8 (3 HSPs)
chr8 (9-43)||(5540949-5540983)
chr8 (9-55)||(5981174-5981220)
chr8 (9-55)||(14420864-14420910)
[»] chr5 (4 HSPs)
chr5 (9-55)||(22938009-22938055)
chr5 (9-43)||(32837095-32837129)
chr5 (9-43)||(37214778-37214812)
chr5 (9-55)||(43490793-43490839)
[»] chr2 (1 HSPs)
chr2 (9-55)||(25139994-25140040)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 49269781 - 49269536
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatcagtataaactcat--------tctatgttgttggagtcatttnnnnnnntaagt 100  Q
    |||||||||| || |||||||||||||  ||||||||| |||||||| ||||||  |||        |||||||||||||||||||||       |||||    
T  49269781 aatatcataaaaaaactctaaaaatgtaaaatgactgactgtcatcactataaatccatataaattttctatgttgttggagtcatttaaaaagataagt 49269682  T
Q  101 atatttttacaacttacactagttagtattctaccatattgctatccttattcaatcatatagttattatgtaacttagtaatgttgtggttgagacaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49269681 atatttttacaacttacactagttagtattctaccatattgctatccttattcaatcatatagttattatgtaacttggtaatgttgtggttgagacaac 49269582  T
Q  201 caaactagagaggaatcatagcccttgatgcaatttggaaagagaa 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  49269581 caaactagagaggaatcatagcccttgatgcaatttggaaagagaa 49269536  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 5680515 - 5680481
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgac 43  Q
    |||||||||| ||||||||||||||||||||||||    
T  5680515 aatatcataaaaagactctaaaaatgtggaatgac 5680481  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 14571072 - 14571038
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgac 43  Q
    |||||||||| ||||||||||||||||||||||||    
T  14571072 aatatcataaaaagactctaaaaatgtggaatgac 14571038  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 2097772 - 2097702
Alignment:
Q  176 ttagtaatgttgtggttgagacaaccaaactagagaggaatcatagcccttgatgcaatttggaaagagaa 246  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||    
T  2097772 ttagtaatgttgtggttgagacaatcaaactagataggaatcatagcccttaatgcaatttggaaagagaa 2097702  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 29644262 - 29644308
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatca 55  Q
    |||||||||| ||||||||| |||||||||||||| || ||||||||    
T  29644262 aatatcataaaaagactctataaatgtggaatgacagactgtcatca 29644308  T

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Target: scaffold1993 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 1091 - 1045
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatca 55  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  1091 aatatcataaaaagactctaaaaatgtgaaatgactgactgtcatca 1045  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 197288 - 197242
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatca 55  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||    
T  197288 aatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 197242  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 16185610 - 16185656
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatca 55  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||    
T  16185610 aatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 16185656  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 16243212 - 16243165
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatcag 56  Q
    |||||||||| ||||||||||||||   ||||||||||||||||||||    
T  16243212 aatatcataaaaagactctaaaaatagcgaatgactgattgtcatcag 16243165  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 54460413 - 54460364
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatcagta 58  Q
    |||||||||| ||||||||||||||   |||||||||| |||||||||||    
T  54460413 aatatcataaaaagactctaaaaatagtgaatgactgactgtcatcagta 54460364  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 9953082 - 9953034
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatcagt 57  Q
    |||||||||| ||||||||||||||||| |||||| || ||||||||||    
T  9953082 aatatcataaaaagactctaaaaatgtgaaatgacagactgtcatcagt 9953034  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 28666130 - 28666178
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatcagt 57  Q
    |||||||||| ||||||||||||||   |||||||||| ||||||||||    
T  28666130 aatatcataaaaagactctaaaaataacgaatgactgactgtcatcagt 28666178  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 8276058 - 8276011
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatcag 56  Q
    |||||||||| |||||||||||||| ||||||||| || |||||||||    
T  8276058 aatatcataaaaagactctaaaaatatggaatgacagactgtcatcag 8276011  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 9865596 - 9865644
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatcagt 57  Q
    |||||||||| ||||||||||||||   |||||||||| ||||||||||    
T  9865596 aatatcataaaaagactctaaaaatagcgaatgactgactgtcatcagt 9865644  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 246304 - 246338
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgac 43  Q
    |||||||||| ||||||||||||||||||||||||    
T  246304 aatatcataaaaagactctaaaaatgtggaatgac 246338  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 5540949 - 5540983
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgac 43  Q
    |||||||||| ||||||||||||||||||||||||    
T  5540949 aatatcataaaaagactctaaaaatgtggaatgac 5540983  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 5981174 - 5981220
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatca 55  Q
    |||||||||| ||||||||||||||||| |||||| || ||||||||    
T  5981174 aatatcataaaaagactctaaaaatgtgaaatgacggactgtcatca 5981220  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 14420910 - 14420864
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatca 55  Q
    |||||||||| |||||||||||||||||||||||  || ||||||||    
T  14420910 aatatcataaaaagactctaaaaatgtggaatgagagactgtcatca 14420864  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 22938009 - 22938055
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatca 55  Q
    |||||||||| ||||||||||||| |||||||||| || ||||||||    
T  22938009 aatatcataaaaagactctaaaaacgtggaatgacagactgtcatca 22938055  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 32837129 - 32837095
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgac 43  Q
    |||||||||| ||||||||||||||||||||||||    
T  32837129 aatatcataaaaagactctaaaaatgtggaatgac 32837095  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 37214812 - 37214778
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgac 43  Q
    |||||||||| ||||||||||||||||||||||||    
T  37214812 aatatcataaaaagactctaaaaatgtggaatgac 37214778  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 43490839 - 43490793
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatca 55  Q
    |||||||||| ||||||||||||||||| |||||| || ||||||||    
T  43490839 aatatcataaaaagactctaaaaatgtgaaatgacagactgtcatca 43490793  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 25139994 - 25140040
Alignment:
Q  9 aatatcataagaagactctaaaaatgtggaatgactgattgtcatca 55  Q
    |||||||||| || ||||||||| |||||||||||||| ||||||||    
T  25139994 aatatcataaaaaaactctaaaattgtggaatgactgactgtcatca 25140040  T

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