View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15646_high_2 (Length: 563)
Name: NF15646_high_2
Description: NF15646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15646_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 22 - 270
Target Start/End: Original strand, 41361074 - 41361322
Alignment:
| Q |
22 |
aaccattgagaagataaaaaatcaccataagaatattttgaatctttttgcaatttggaagtctaactgtgcacctaaactaattagtctatgaaaacca |
121 |
Q |
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| T |
41361074 |
aaccattgagaagataaaaaatcaccataagaatattttgaatctttttgcaatttggaagtctaactgtgcacctaaactaattagtctatgaaaacca |
41361173 |
T |
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| Q |
122 |
tgaagaaggttgcacatatgattgagcattgcctagcaaaacccttgcttgttcgtactaataacatattcacatttggggaatgtttggtggcggctta |
221 |
Q |
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| T |
41361174 |
tgaagaaggttgcacatatgattgagcattgcctagcaaaacccttgcttgttcgtactaataacatattcacatttggggaatgtttggtggcggctta |
41361273 |
T |
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| Q |
222 |
tgacacctaattctcgaccactgctaatatttcttcgataaaagtagga |
270 |
Q |
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| T |
41361274 |
tgacacctaattctcgaccgctgctaatatttcttcgataaaagtagga |
41361322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 336 - 556
Target Start/End: Original strand, 41361388 - 41361608
Alignment:
| Q |
336 |
tgattgctggatatatttttcttctcttgatgctgtttatgtttaaactgctttttcccctgataattgaacaacggaaatggcattgagttgctcatct |
435 |
Q |
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| T |
41361388 |
tgattgctggatatatttttcttctcttgatgctgtttatgtttaaactgctttttcccctgataattgaacaacggaaatggcatcgagttgctcatct |
41361487 |
T |
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| Q |
436 |
catgagttgtaacctcaatattaattccatcaagcacaataatcatacaactcaaaaactttgaatactctgcgaatgttgttttgcaatttgtcctcga |
535 |
Q |
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| T |
41361488 |
catgagttgtaacctcaatattaattccatcaagcacaataatcatacaactcaaaaactttgaatactctgcgaatgttgttttgcaatttgtcctcga |
41361587 |
T |
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| Q |
536 |
agttgtggcatattcatctca |
556 |
Q |
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| T |
41361588 |
agttgtggcatattcttctca |
41361608 |
T |
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