View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15646_high_3 (Length: 358)
Name: NF15646_high_3
Description: NF15646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15646_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 344
Target Start/End: Original strand, 26435805 - 26436143
Alignment:
| Q |
6 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
105 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26435805 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26435904 |
T |
|
| Q |
106 |
atatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
205 |
Q |
| |
|
|||||||||||||||| |||| |||||||| || || ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26435905 |
atatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26436004 |
T |
|
| Q |
206 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaactagtttcctataggttg |
305 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
26436005 |
tctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttagatttgagatctagtttcctataggttg |
26436104 |
T |
|
| Q |
306 |
ttactatgtctgtttatgcaccattagtctttttatttt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26436105 |
ttactatgtctgtttatgcaccattagtctttttttttt |
26436143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 26832736 - 26833020
Alignment:
| Q |
6 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
105 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26832736 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26832835 |
T |
|
| Q |
106 |
atatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
205 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832836 |
atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26832935 |
T |
|
| Q |
206 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaacta |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832936 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaacta |
26833020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 26434025 - 26434309
Alignment:
| Q |
6 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
105 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26434025 |
gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg |
26434124 |
T |
|
| Q |
106 |
atatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
205 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434125 |
atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
26434224 |
T |
|
| Q |
206 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaacta |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434225 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaacta |
26434309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 24307219 - 24307502
Alignment:
| Q |
1 |
atgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcat |
100 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307219 |
atgttgaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcat |
24307318 |
T |
|
| Q |
101 |
caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
24307319 |
caatgatatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcaga |
24307418 |
T |
|
| Q |
201 |
cttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttga |
284 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||| |
|
|
| T |
24307419 |
cttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttagatttga |
24307502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 23408822 - 23408544
Alignment:
| Q |
1 |
atgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
23408822 |
atgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcat |
23408723 |
T |
|
| Q |
101 |
caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcagg |
200 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408722 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaga |
23408623 |
T |
|
| Q |
201 |
cttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga |
279 |
Q |
| |
|
|||||||| || || |||||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
23408622 |
cttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttaga |
23408544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 23415991 - 23415706
Alignment:
| Q |
1 |
atgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcat |
100 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
23415991 |
atgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcat |
23415892 |
T |
|
| Q |
101 |
caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcagg |
200 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
23415891 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaga |
23415792 |
T |
|
| Q |
201 |
cttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaa |
286 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
23415791 |
cttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagacttgaaa |
23415706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 23453654 - 23453375
Alignment:
| Q |
1 |
atgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
23453654 |
atgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcat |
23453555 |
T |
|
| Q |
101 |
caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcagg |
200 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
23453554 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagt |
23453455 |
T |
|
| Q |
201 |
cttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagat |
280 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||| |
|
|
| T |
23453454 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttagat |
23453375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 23868728 - 23869007
Alignment:
| Q |
1 |
atgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcat |
100 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868728 |
atgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcat |
23868827 |
T |
|
| Q |
101 |
caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcagg |
200 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
23868828 |
caatgatatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcaga |
23868927 |
T |
|
| Q |
201 |
cttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagat |
280 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||| || || || ||||| |||||||| |||||||||||||| |
|
|
| T |
23868928 |
cttgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat |
23869007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 23885823 - 23886105
Alignment:
| Q |
1 |
atgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcat |
100 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
23885823 |
atgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcat |
23885922 |
T |
|
| Q |
101 |
caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcagg |
200 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
23885923 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagg |
23886022 |
T |
|
| Q |
201 |
cttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttg |
283 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
23886023 |
cttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg |
23886105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 23402070 - 23402351
Alignment:
| Q |
1 |
atgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
23402070 |
atgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcat |
23402169 |
T |
|
| Q |
101 |
caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcagg |
200 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
23402170 |
caatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagg |
23402269 |
T |
|
| Q |
201 |
cttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagattt |
282 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| || ||||| ||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
23402270 |
cttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttagattt |
23402351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 6 - 280
Target Start/End: Complemental strand, 34662318 - 34662044
Alignment:
| Q |
6 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
105 |
Q |
| |
|
||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
34662318 |
gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcatcaatg |
34662219 |
T |
|
| Q |
106 |
atatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
205 |
Q |
| |
|
||||||||||||| || ||||| |||||||| || || || ||||| || |||||||| || || ||||| |||||||||||||| || || |||||||| |
|
|
| T |
34662218 |
atatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttaggcttgt |
34662119 |
T |
|
| Q |
206 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagat |
280 |
Q |
| |
|
||| || || |||||||| ||||||||||| |||||||||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
34662118 |
tcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttagat |
34662044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
| Q |
95 |
tttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcg |
194 |
Q |
| |
|
||||||||| |||||||| ||||| || ||||| |||| || || || ||| | ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23451920 |
tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca |
23451821 |
T |
|
| Q |
195 |
gtcaggcttgttctgcccggtgaattggccaag |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
23451820 |
gtcaggcttgttctgcccggtgaattggccaag |
23451788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 31632848 - 31632954
Alignment:
| Q |
202 |
ttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaactagtttcctatag |
301 |
Q |
| |
|
||||| |||||| ||||||||| ||||||| ||||| |||||||||||| | ||| || || || || || ||||||||||| | || |||| |||||| |
|
|
| T |
31632848 |
ttgttgtgcccgatgaattggctaagcatgttgtttgtgagggtaccaaagttgtgaccaaattcacaagctcttagatttgggatcttgtttactatag |
31632947 |
T |
|
| Q |
302 |
gttgtta |
308 |
Q |
| |
|
||||||| |
|
|
| T |
31632948 |
gttgtta |
31632954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 41670401 - 41670651
Alignment:
| Q |
6 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
105 |
Q |
| |
|
||||| |||||||||||||| ||||| || || || || ||||| || |||||||||||||||||||| || ||||| || |||||||| |||||||||| |
|
|
| T |
41670401 |
gaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg |
41670500 |
T |
|
| Q |
106 |
atatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
205 |
Q |
| |
|
||||||| ||||| || |||||||||||||| || || || |||||||| |||||||| ||||||||||| |||| || ||||| || || | ||||| |
|
|
| T |
41670501 |
atatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt |
41670600 |
T |
|
| Q |
206 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
256 |
Q |
| |
|
||| ||||||||| | || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
41670601 |
tctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgt |
41670651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 284
Target Start/End: Original strand, 33216596 - 33216724
Alignment:
| Q |
156 |
aagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctg |
255 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || || ||||| |||||||| | |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33216596 |
aagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggctg |
33216695 |
T |
|
| Q |
256 |
tcactaagtttactagttcttagatttga |
284 |
Q |
| |
|
| || ||||||||| ||||||| |||||| |
|
|
| T |
33216696 |
tgaccaagtttactggttcttaaatttga |
33216724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 268
Target Start/End: Original strand, 40795767 - 40796032
Alignment:
| Q |
3 |
gtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca |
102 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || || || || ||||| || |||||||| ||||| ||||| || ||||| || |||||||||||||||| |
|
|
| T |
40795767 |
gtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcatca |
40795866 |
T |
|
| Q |
103 |
atgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggct |
202 |
Q |
| |
|
|||| ||||| ||||| || ||||||||||| || || |||||| | ||||| ||||| || || ||||| || | || |||||||| || || | || |
|
|
| T |
40795867 |
atgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgtct |
40795966 |
T |
|
| Q |
203 |
tgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttac |
268 |
Q |
| |
|
||||| ||||| ||| | |||||||| ||||| || ||||| ||||| || |||||||| ||||| |
|
|
| T |
40795967 |
cgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaaatttac |
40796032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 29391467 - 29391737
Alignment:
| Q |
6 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
105 |
Q |
| |
|
||||| || ||||| ||||| ||||| || || ||||| ||||| || || || ||||| || |||||| ||||| || ||||||||||||||||||| |
|
|
| T |
29391467 |
gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg |
29391566 |
T |
|
| Q |
106 |
atatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
205 |
Q |
| |
|
||||||| |||||||| ||||||||| |||| || | ||| | ||||| ||||| || || || || || ||||| ||||| || || || | | || |
|
|
| T |
29391567 |
atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt |
29391666 |
T |
|
| Q |
206 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttctt |
276 |
Q |
| |
|
||| |||||||||||||| || ||||||||||| || || ||||||||||| || || ||||| ||||||| |
|
|
| T |
29391667 |
tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgttaccaaatttacgagttctt |
29391737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 199 - 308
Target Start/End: Original strand, 45576397 - 45576506
Alignment:
| Q |
199 |
ggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttgaaaactagtttccta |
298 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||| || || || || || |||||||||||| | || |||| ||| |
|
|
| T |
45576397 |
ggcttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttagatttgagatcttgtttacta |
45576496 |
T |
|
| Q |
299 |
taggttgtta |
308 |
Q |
| |
|
|||||||||| |
|
|
| T |
45576497 |
taggttgtta |
45576506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 156 - 284
Target Start/End: Original strand, 47317433 - 47317561
Alignment:
| Q |
156 |
aagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctg |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||| ||| |||| || |||||||||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
47317433 |
aagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagctg |
47317532 |
T |
|
| Q |
256 |
tcactaagtttactagttcttagatttga |
284 |
Q |
| |
|
| || ||||||||||||||||| |||||| |
|
|
| T |
47317533 |
tgaccaagtttactagttcttaaatttga |
47317561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 256
Target Start/End: Complemental strand, 40180547 - 40180297
Alignment:
| Q |
6 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
105 |
Q |
| |
|
||||| |||||||| ||||| ||||| || |||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || | |
|
|
| T |
40180547 |
gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg |
40180448 |
T |
|
| Q |
106 |
atatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt |
205 |
Q |
| |
|
||||||| |||||||| ||||||||||| || | | |||||||| || |||||||| || || ||||| ||||| ||||| || || || || | || |
|
|
| T |
40180447 |
atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt |
40180348 |
T |
|
| Q |
206 |
tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
256 |
Q |
| |
|
||| || || |||||||| || |||||||||||||| || || |||||||| |
|
|
| T |
40180347 |
tcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt |
40180297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 29684701 - 29684822
Alignment:
| Q |
6 |
gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
105 |
Q |
| |
|
||||| |||||||| || |||||||| || || ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || | |
|
|
| T |
29684701 |
gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg |
29684800 |
T |
|
| Q |
106 |
atatcttcgagaaactagctca |
127 |
Q |
| |
|
||||||| ||||||| ||||| |
|
|
| T |
29684801 |
atatctttaagaaactcgctca |
29684822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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