View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15646_high_5 (Length: 225)

Name: NF15646_high_5
Description: NF15646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15646_high_5
NF15646_high_5
[»] chr1 (2 HSPs)
chr1 (3-219)||(52082712-52082928)
chr1 (15-219)||(52092920-52093130)
[»] chr2 (1 HSPs)
chr2 (146-208)||(32785538-32785600)
[»] chr3 (7 HSPs)
chr3 (146-187)||(33708804-33708845)
chr3 (146-213)||(514486-514553)
chr3 (152-187)||(33396785-33396820)
chr3 (152-187)||(37580607-37580642)
chr3 (152-186)||(33093715-33093749)
chr3 (152-184)||(36810812-36810844)
chr3 (161-213)||(51764201-51764253)
[»] chr7 (3 HSPs)
chr7 (152-204)||(10167444-10167496)
chr7 (152-204)||(10169900-10169952)
chr7 (152-204)||(10177425-10177477)
[»] chr4 (2 HSPs)
chr4 (15-59)||(1754626-1754670)
chr4 (152-213)||(547193-547254)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 52082712 - 52082928
Alignment:
Q  3 tccaagtgaattattttacaatatcttaaaacttcaacgataccttcagatatgcaatagcaatggcaatatctcaggtcaagcacttgcaagtttggaa 102  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082712 tccaagtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaatatctcaggtcaagcacttgcaagtttggaa 52082811  T
Q  103 aaagagaagccaacattttgacgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaaga 202  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082812 aaagagaagccaacattttgatgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaaga 52082911  T
Q  203 attagagttcttttcac 219  Q
    |||||||||||| ||||    
T  52082912 attagagttcttatcac 52082928  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 52092920 - 52093130
Alignment:
Q  15 attttacaatatcttaaaacttcaacgataccttcagatatgcaatagcaatggcaatatctc------aggtcaagcacttgcaagtttggaaaaagag 108  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||      ||||||||| | |||| |||||| |||||||    
T  52092920 attttacaacatcttaaaacttcaacaataccttcggatatgcaatagcaatggcaatatctcattctcaggtcaagcccctgcaggtttgggaaaagag 52093019  T
Q  109 aagccaacattttgacgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattaga 208  Q
    ||| ||||||||||| ||||||||| ||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |    
T  52093020 aaggcaacattttgatgctttcatttttcaaccgtggattgcctgccaaatggagagacttcacttgagggtatacaacaaagtccatcaaacaattaca 52093119  T
Q  209 gttcttttcac 219  Q
     ||||| ||||    
T  52093120 attcttatcac 52093130  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 32785600 - 32785538
Alignment:
Q  146 attgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattaga 208  Q
    ||||||||||||||||||| |||| | |||||||  ||||||||| |||| ||||||||||||    
T  32785600 attgcgagccaaatggagaaactttaattgagggattacaacaaaatccatcaaagaattaga 32785538  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 33708845 - 33708804
Alignment:
Q  146 attgcgagccaaatggagagacttcacttgagggtatacaac 187  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  33708845 attgtgagccaaatggagagacttcacttgatggtatacaac 33708804  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 514553 - 514486
Alignment:
Q  146 attgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 213  Q
    |||| ||||||||| |||||| || | ||||||||  ||||||||||||| ||||||||| |||||||    
T  514553 attgtgagccaaatagagagattttaattgagggttcacaacaaagtccaacaaagaattggagttct 514486  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 33396785 - 33396820
Alignment:
Q  152 agccaaatggagagacttcacttgagggtatacaac 187  Q
    ||||||||||||||||||||||||| ||||||||||    
T  33396785 agccaaatggagagacttcacttgatggtatacaac 33396820  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 37580642 - 37580607
Alignment:
Q  152 agccaaatggagagacttcacttgagggtatacaac 187  Q
    ||||||||||||||||||||||||| ||||||||||    
T  37580642 agccaaatggagagacttcacttgatggtatacaac 37580607  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 33093749 - 33093715
Alignment:
Q  152 agccaaatggagagacttcacttgagggtatacaa 186  Q
    ||||||||||||||||||||||||| |||||||||    
T  33093749 agccaaatggagagacttcacttgacggtatacaa 33093715  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 36810844 - 36810812
Alignment:
Q  152 agccaaatggagagacttcacttgagggtatac 184  Q
    ||||||||||||||||||||||||| |||||||    
T  36810844 agccaaatggagagacttcacttgatggtatac 36810812  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 51764253 - 51764201
Alignment:
Q  161 gagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 213  Q
    ||||||||| | ||||||||||||| ||||||||| |||||||| ||| ||||    
T  51764253 gagagactttaattgagggtatacaccaaagtccaccaaagaatcagaattct 51764201  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 10167496 - 10167444
Alignment:
Q  152 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 204  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10167496 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10167444  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 10169952 - 10169900
Alignment:
Q  152 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 204  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10169952 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10169900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 10177477 - 10177425
Alignment:
Q  152 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 204  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10177477 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10177425  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 1754626 - 1754670
Alignment:
Q  15 attttacaatatcttaaaacttcaacgataccttcagatatgcaa 59  Q
    |||||| || |||||||||||||||||||||||| ||||||||||    
T  1754626 attttagaacatcttaaaacttcaacgatacctttagatatgcaa 1754670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 547193 - 547254
Alignment:
Q  152 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttct 213  Q
    |||||||||||||||||||| |||||||  ||||||||| |||   ||||||||||| ||||    
T  547193 agccaaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattct 547254  T

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