View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15646_low_1 (Length: 1189)

Name: NF15646_low_1
Description: NF15646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15646_low_1
NF15646_low_1
[»] chr7 (8 HSPs)
chr7 (806-1170)||(3753085-3753449)
chr7 (496-774)||(3752775-3753053)
chr7 (507-774)||(4047185-4047452)
chr7 (806-1166)||(4046793-4047153)
chr7 (1-118)||(3752263-3752380)
chr7 (307-427)||(3752582-3752707)
chr7 (558-679)||(9664309-9664430)
chr7 (183-255)||(3752453-3752525)
[»] chr6 (11 HSPs)
chr6 (516-687)||(6466373-6466544)
chr6 (549-697)||(6458406-6458554)
chr6 (546-687)||(6506526-6506667)
chr6 (567-706)||(6529220-6529359)
chr6 (567-687)||(6472058-6472178)
chr6 (583-687)||(6519604-6519708)
chr6 (550-679)||(6497721-6497850)
chr6 (585-675)||(6460857-6460947)
chr6 (567-675)||(6515107-6515215)
chr6 (585-679)||(7204144-7204239)
chr6 (585-679)||(7238895-7238990)
[»] chr4 (1 HSPs)
chr4 (558-679)||(13535333-13535454)


Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 806 - 1170
Target Start/End: Original strand, 3753085 - 3753449
Alignment:
Q  806 ccatgttatctcatcctatagtgatcttggtgtgactctcgacattccctcttcaaatctaagattctttttagttagaggaagcccttttgtaactgct 905  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3753085 ccatgttatctcatcatatagtgatcttggtgtgactcttgacattccctcttcaaatctaagattctttttagttagaggaagcccttttataactgct 3753184  T
Q  906 tcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaactta 1005  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753185 tcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaactta 3753284  T
Q  1006 ataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccatttaccggtataatccgtat 1105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3753285 ataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccattttccggtataatccgtat 3753384  T
Q  1106 catagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctgtct 1170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753385 catagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctgtct 3753449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 496 - 774
Target Start/End: Original strand, 3752775 - 3753053
Alignment:
Q  496 tgtcttcatcatcttctgttcctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacc 595  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3752775 tgtcttcatcatcttctcttcctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacc 3752874  T
Q  596 cctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaacttttccctc 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3752875 cctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaacttttccctc 3752974  T
Q  696 tctatttcctaccctcttcttctcttttcagcaacaatgttgtaccaagttttttcaccagatctcacaatttcttcct 774  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3752975 tctatttcctaccctcttctcctcttttcagcaacaatgttgtaccaagttttttcaccagatctcacaatttcatcct 3753053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 172; E-Value: 8e-92
Query Start/End: Original strand, 507 - 774
Target Start/End: Complemental strand, 4047452 - 4047185
Alignment:
Q  507 tcttctgttcctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaa 606  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  4047452 tcttctgttcctttcctatttcctcaaactcattcaactgtccttccaaacccttcaaatttcttctcacaaaacttactatccacacctctccctacaa 4047353  T
Q  607 actctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaacttttccctctctatttccta 706  Q
    |||| ||||||||||| |||||||| || ||||||||   || |||||||||||||||||||||  ||||||||||||||| |||||| ||| |||| ||    
T  4047352 actcattcttccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcctcaaactcttccctatctgtttcata 4047253  T
Q  707 ccctcttcttctcttttcagcaacaatgttgtaccaagttttttcaccagatctcacaatttcttcct 774  Q
    ||||||||| ||||||||| || ||||||||||||||||||||||||||||||| ||||| |||||||    
T  4047252 ccctcttctcctcttttcaacagcaatgttgtaccaagttttttcaccagatcttacaatatcttcct 4047185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 169; E-Value: 5e-90
Query Start/End: Original strand, 806 - 1166
Target Start/End: Complemental strand, 4047153 - 4046793
Alignment:
Q  806 ccatgttatctcatcctatagtgatcttggtgtgactctcgacattccctcttcaaatctaagattctttttagttagaggaagcccttttgtaactgct 905  Q
    ||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||    
T  4047153 ccatgttatttcatcttatagtgatcttggtgtgactcttgatattccctcttcaaacctaagattctttttggttagaggaagcccttttttaactgct 4047054  T
Q  906 tcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaactta 1005  Q
    ||||||||||||||||   | ||||||||||||||| ||||||  ||| ||||||||||| | || ||  | ||||| |||||| ||||||||||||| |    
T  4047053 tcagttacaaaaccaatacctctttcaatcacaacaattcatagtataatttctttgtctccatttgataagaaaaaaaccaaatatacccttcaactca 4046954  T
Q  1006 ataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccatttaccggtataatccgtat 1105  Q
    |||||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||  ||||  ||||||| ||||||| || |||||    
T  4046953 ataacaatcagacatggatcatatacacttcttcaccaatcaacttcaaccatgatggttccgaggttaaatccggtccattttccggtattattcgtat 4046854  T
Q  1106 catagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccct 1166  Q
    |   ||  ||||| || ||||   ||||||||||||||||||||| |||||||||||||||    
T  4046853 cgcggttgttcctgattccaatggtgagaaaattcttgataaatttagctcttgttaccct 4046793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 3752263 - 3752380
Alignment:
Q  1 cctaagaccatttccaatggaggaagcttttctacatatgttatgacatctaataggtacttctataatagaaaaataaaaattgtgttaatgagaagag 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3752263 cctaagatcatttccaatggaggaagcttttctacatatgttatgacatctaataggtacttctataatagaaaaataaaaattgtgttaatgagaagag 3752362  T
Q  101 tgactttgttaagctctc 118  Q
    ||||||||||||||||||    
T  3752363 tgactttgttaagctctc 3752380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 307 - 427
Target Start/End: Original strand, 3752582 - 3752707
Alignment:
Q  307 taagtagcccttatcatttcacctnnnnnnnn-ttcttgtgaaaatcttttttaagaacctttattttaaag----gtttatatgctcaacaatgtcacc 401  Q
    ||||||||||||||||||||||||         |||||||||| ||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  3752582 taagtagcccttatcatttcacctaaaaaaatattcttgtgaatatcttttttaagaacctttattttaaagtaaggtttatatgctcaacaatgtcacc 3752681  T
Q  402 ttagctcttatataaacaaggaaagg 427  Q
    ||||||||||||||||||||||||||    
T  3752682 ttagctcttatataaacaaggaaagg 3752707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 558 - 679
Target Start/End: Original strand, 9664309 - 9664430
Alignment:
Q  558 ccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaataca 657  Q
    ||||| || |||||||| | ||| || ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||  |  ||||||||    
T  9664309 ccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaataca 9664408  T
Q  658 ttcacccttacctcatcaaatc 679  Q
    |||||||||| ||| |||||||    
T  9664409 ttcacccttatctcgtcaaatc 9664430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 3752453 - 3752525
Alignment:
Q  183 gtctatacaagaaatttgtgtgatgtgtaaagttagagatattggatgtttataaagttataaatgagtgata 255  Q
    |||| |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||    
T  3752453 gtctgtacaagaaatttgtgtgacgtgcaaagttagagatattgaatgtttataaagttatatatgagtgata 3752525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 3e-39; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 516 - 687
Target Start/End: Complemental strand, 6466544 - 6466373
Alignment:
Q  516 cctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttct 615  Q
    ||||||||||| || || |||||||| || ||||||||  ||||  ||||||||||||| | ||| || ||||||||||||||||| |||||||||||||    
T  6466544 cctttcctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttct 6466445  T
Q  616 tccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaact 687  Q
    ||||||||||||||||| | |||||||||  ||||||||||||||| || || ||||||||||| |||||||    
T  6466444 tccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaact 6466373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 549 - 697
Target Start/End: Complemental strand, 6458554 - 6458406
Alignment:
Q  549 ctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacac 648  Q
    |||||| ||||||||||||||||||| |  || || || ||  | || ||||| |||||||||||||||||||| |||||||| || |||||||||||||    
T  6458554 ctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacac 6458455  T
Q  649 ctgaatacattcacccttacctcatcaaatcctcaaacttttccctctc 697  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  6458454 ctgagtacattcacccttacctcatcaaatcctcaaacttctccctctc 6458406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 546 - 687
Target Start/End: Complemental strand, 6506667 - 6506526
Alignment:
Q  546 gtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgaca 645  Q
    ||||||||  |||| || || |||||||| | ||| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||      
T  6506667 gtcctccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatggtgatg 6506568  T
Q  646 cacctgaatacattcacccttacctcatcaaatcctcaaact 687  Q
    ||||||||||| |||| ||||||||||||||||| |||||||    
T  6506567 cacctgaatactttcatccttacctcatcaaatcatcaaact 6506526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 567 - 706
Target Start/End: Complemental strand, 6529359 - 6529220
Alignment:
Q  567 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 666  Q
    |||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| || |    
T  6529359 ttcttctctccaaatctgctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatggtgaccaacctgaatacattcatccat 6529260  T
Q  667 acctcatcaaatcctcaaacttttccctctctatttccta 706  Q
    | ||||||||||| ||| |||  || || |||||||||||    
T  6529259 atctcatcaaatcttcagactcatcactttctatttccta 6529220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 567 - 687
Target Start/End: Original strand, 6472058 - 6472178
Alignment:
Q  567 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 666  Q
    |||||||||| |||  | ||||||||||||||||||||||||||||||||||||||| |||| ||  | |||||||||  ||||||||||||||| ||||    
T  6472058 ttcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatggtgaccaacctgaatacattcatcctt 6472157  T
Q  667 acctcatcaaatcctcaaact 687  Q
    ||||||||||||| |||||||    
T  6472158 acctcatcaaatcatcaaact 6472178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 583 - 687
Target Start/End: Original strand, 6519604 - 6519708
Alignment:
Q  583 tactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctc 682  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||  ||||||||| ||||| || |||||||| ||||| ||    
T  6519604 tactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatatattcatccatacctcattaaatcatc 6519703  T
Q  683 aaact 687  Q
    |||||    
T  6519704 aaact 6519708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 550 - 679
Target Start/End: Complemental strand, 6497850 - 6497721
Alignment:
Q  550 tcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacc 649  Q
    ||||| |||| || || ||||||||  |||| || ||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||  |||    
T  6497850 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 6497751  T
Q  650 tgaatacattcacccttacctcatcaaatc 679  Q
    ||||||  |||| |||||||||||||||||    
T  6497750 tgaatattttcatccttacctcatcaaatc 6497721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 585 - 675
Target Start/End: Original strand, 6460857 - 6460947
Alignment:
Q  585 ctatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatca 675  Q
    ||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||||  ||| |||||| |||| |||||||||||||    
T  6460857 ctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatca 6460947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 567 - 675
Target Start/End: Original strand, 6515107 - 6515215
Alignment:
Q  567 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 666  Q
    |||||||| | ||| || ||||| ||||||||||| ||||||||||||||||||||||||  ||||    | ||||| |||||||||||||| || ||||    
T  6515107 ttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctgaatacatccatcctt 6515206  T
Q  667 acctcatca 675  Q
    |||||||||    
T  6515207 acctcatca 6515215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 585 - 679
Target Start/End: Original strand, 7204144 - 7204239
Alignment:
Q  585 ctatccacacccc-tccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatc 679  Q
    ||||||||||||| |||| || |  ||||||||||||||||||||||||  ||||||||||  ||||||||||||||| || |||||||| |||||    
T  7204144 ctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatc 7204239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 585 - 679
Target Start/End: Original strand, 7238895 - 7238990
Alignment:
Q  585 ctatccacacccc-tccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatc 679  Q
    ||||||||||||| |||| || |  ||||||||||||||||||||||||  ||||||||||  ||||||||||||||| || |||||||| |||||    
T  7238895 ctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatc 7238990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 558 - 679
Target Start/End: Original strand, 13535333 - 13535454
Alignment:
Q  558 ccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaataca 657  Q
    ||||| || |||||||| | ||| || ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||  |  ||||||||    
T  13535333 ccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaataca 13535432  T
Q  658 ttcacccttacctcatcaaatc 679  Q
    |||||||||| ||| |||||||    
T  13535433 ttcacccttatctcgtcaaatc 13535454  T

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