View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15646_low_10 (Length: 205)

Name: NF15646_low_10
Description: NF15646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15646_low_10
NF15646_low_10
[»] chr4 (14 HSPs)
chr4 (67-196)||(24307057-24307186)
chr4 (73-196)||(23401908-23402031)
chr4 (64-196)||(26832569-26832701)
chr4 (73-196)||(23408861-23408984)
chr4 (64-196)||(23416018-23416150)
chr4 (64-196)||(23868566-23868698)
chr4 (64-196)||(26433858-26433990)
chr4 (64-196)||(26435638-26435770)
chr4 (64-196)||(23885661-23885793)
chr4 (76-196)||(23453696-23453816)
chr4 (70-174)||(34662359-34662463)
chr4 (1-33)||(23402071-23402103)
chr4 (1-33)||(23408789-23408821)
chr4 (1-33)||(23453621-23453653)
[»] chr2 (1 HSPs)
chr2 (125-196)||(14715349-14715420)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 5e-58; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 67 - 196
Target Start/End: Complemental strand, 24307186 - 24307057
Alignment:
Q  67 gcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt 166  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  24307186 gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt 24307087  T
Q  167 tcttctctgctggcttcttctctccctttg 196  Q
    ||||||||||||||||||||||||||||||    
T  24307086 tcttctctgctggcttcttctctccctttg 24307057  T

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Target: chr4; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 73 - 196
Target Start/End: Complemental strand, 23402031 - 23401908
Alignment:
Q  73 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23402031 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct 23401932  T
Q  173 ctgctggcttcttctctccctttg 196  Q
    | ||||||||||||||||||||||    
T  23401931 ccgctggcttcttctctccctttg 23401908  T

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Target: chr4; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 26832701 - 26832569
Alignment:
Q  64 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 163  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26832701 ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26832602  T
Q  164 gtttcttctctgctggcttcttctctccctttg 196  Q
    |||||||||||||||||||||||||||| ||||    
T  26832601 gtttcttctctgctggcttcttctctccttttg 26832569  T

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Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 23408861 - 23408984
Alignment:
Q  73 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct 172  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23408861 gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct 23408960  T
Q  173 ctgctggcttcttctctccctttg 196  Q
    | ||||||||||||||||||||||    
T  23408961 ccgctggcttcttctctccctttg 23408984  T

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Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 23416018 - 23416150
Alignment:
Q  64 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 163  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |    
T  23416018 ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctg 23416117  T
Q  164 gtttcttctctgctggcttcttctctccctttg 196  Q
    |||||||||| ||||||||||||||||||||||    
T  23416118 gtttcttctccgctggcttcttctctccctttg 23416150  T

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Target: chr4; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 23868698 - 23868566
Alignment:
Q  64 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 163  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  23868698 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg 23868599  T
Q  164 gtttcttctctgctggcttcttctctccctttg 196  Q
    |||||||||| ||||||||||||||||||||||    
T  23868598 gtttcttctccgctggcttcttctctccctttg 23868566  T

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Target: chr4; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 26433990 - 26433858
Alignment:
Q  64 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 163  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26433990 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26433891  T
Q  164 gtttcttctctgctggcttcttctctccctttg 196  Q
    |||||||||||||||||||||||||||| ||||    
T  26433890 gtttcttctctgctggcttcttctctccttttg 26433858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 26435770 - 26435638
Alignment:
Q  64 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 163  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26435770 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26435671  T
Q  164 gtttcttctctgctggcttcttctctccctttg 196  Q
    |||||||||||||||||||||||||||| ||||    
T  26435670 gtttcttctctgctggcttcttctctccttttg 26435638  T

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Target: chr4; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 23885793 - 23885661
Alignment:
Q  64 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 163  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || |    
T  23885793 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctg 23885694  T
Q  164 gtttcttctctgctggcttcttctctccctttg 196  Q
    |||||||||||||||||||||||||||||||||    
T  23885693 gtttcttctctgctggcttcttctctccctttg 23885661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 23453696 - 23453816
Alignment:
Q  76 ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttctctg 175  Q
    ||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||||||||||| |    
T  23453696 ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttcttctccg 23453795  T
Q  176 ctggcttcttctctccctttg 196  Q
    |||||||||||||||||||||    
T  23453796 ctggcttcttctctccctttg 23453816  T

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Target: chr4; HSP #11
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 34662359 - 34662463
Alignment:
Q  70 gctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct 169  Q
    |||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  34662359 gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct 34662458  T
Q  170 tctct 174  Q
    |||||    
T  34662459 tctct 34662463  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23402103 - 23402071
Alignment:
Q  1 actttgaatatgtagatcttgtatgtttctaca 33  Q
    |||||||| ||||||||||||||||||||||||    
T  23402103 actttgaagatgtagatcttgtatgtttctaca 23402071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 23408789 - 23408821
Alignment:
Q  1 actttgaatatgtagatcttgtatgtttctaca 33  Q
    |||||||| ||||||||||||||||||||||||    
T  23408789 actttgaagatgtagatcttgtatgtttctaca 23408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 23453621 - 23453653
Alignment:
Q  1 actttgaatatgtagatcttgtatgtttctaca 33  Q
    |||||||| ||||||||||||||||||||||||    
T  23453621 actttgaagatgtagatcttgtatgtttctaca 23453653  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 14715420 - 14715349
Alignment:
Q  125 gagctttctcggcgacggtggacttcttctcctctgcgggtttcttctctgctggcttcttctctccctttg 196  Q
    ||||||||||  |||| ||| | |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  14715420 gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctcagctggcttcttctctcactttg 14715349  T

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