View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15646_low_2 (Length: 614)

Name: NF15646_low_2
Description: NF15646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15646_low_2
NF15646_low_2
[»] chr4 (13 HSPs)
chr4 (4-283)||(23408328-23408607)
chr4 (462-595)||(23407960-23408093)
chr4 (318-452)||(23408192-23408326)
chr4 (1-68)||(23415712-23415779)
chr4 (1-67)||(23453376-23453442)
chr4 (1-67)||(26434232-26434298)
chr4 (1-67)||(26832943-26833009)
chr4 (1-67)||(26436012-26436078)
chr4 (1-67)||(23868940-23869006)
chr4 (1-67)||(23886035-23886101)
chr4 (1-67)||(24307431-24307497)
chr4 (1-67)||(23402282-23402348)
chr4 (4-67)||(34662045-34662108)
[»] chr1 (2 HSPs)
chr1 (1-56)||(33216653-33216708)
chr1 (3-67)||(45576413-45576477)
[»] chr7 (1 HSPs)
chr7 (1-65)||(47317490-47317554)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 283
Target Start/End: Complemental strand, 23408607 - 23408328
Alignment:
Q  4 gaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagacatttcgtttatgtttattggtttcttagtgtttta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  23408607 gaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagacatttcgattatgtttattggtttcttagtgtttta 23408508  T
Q  104 attttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacttgaaaattgcttgtagaattgggt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23408507 attttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacatgaaaattgcttgtagaattgggt 23408408  T
Q  204 ttctctctgttttgaatgattgatctaggggtatcaaagactgaatacattttctcataaaatatagttggattcctcct 283  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23408407 ttctctctgttttgaatgattgatctaggggtatcaaagacggaatacattttctcataaaatatagttggattcctcct 23408328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 462 - 595
Target Start/End: Complemental strand, 23408093 - 23407960
Alignment:
Q  462 tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctgtaagcacaaacacatctgatacaaaatatatacatgaaagttc 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23408093 tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctttaagcacaaacacatctgatacaaaatatatacatgaaagttc 23407994  T
Q  562 agaggtgagcttagaaggaaagatacatggtgtg 595  Q
    |||||||||||||||| |||||||||||||||||    
T  23407993 agaggtgagcttagaaagaaagatacatggtgtg 23407960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 318 - 452
Target Start/End: Complemental strand, 23408326 - 23408192
Alignment:
Q  318 tgtggattgtgattgtttataattaatcaattttattgacactgtaatttgatcttggcttagatgcaaaattaaggatgttttttgctgtaattctgca 417  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  23408326 tgtgggttgtgattgtttataattaatcaattttactgacactgtaatttgatcttggctgagatgcaaaattaaggatgttttttgctgtaattgtgca 23408227  T
Q  418 gaagatatctgctatatgtttaattataagtggac 452  Q
    |||||||||||||||||||||||||||||||||||    
T  23408226 gaagatatctgctatatgtttaattataagtggac 23408192  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23415779 - 23415712
Alignment:
Q  1 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagac 68  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  23415779 ggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagac 23415712  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 23453442 - 23453376
Alignment:
Q  1 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  23453442 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga 23453376  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26434232 - 26434298
Alignment:
Q  1 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 67  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26434232 ggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26434298  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26832943 - 26833009
Alignment:
Q  1 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 67  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26832943 ggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26833009  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26436012 - 26436078
Alignment:
Q  1 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 67  Q
    ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26436012 ggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttaga 26436078  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23868940 - 23869006
Alignment:
Q  1 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 67  Q
    |||||||||||||| ||||||||||||||||| || || |||||||||||||| || || |||||||    
T  23868940 ggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga 23869006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23886035 - 23886101
Alignment:
Q  1 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 67  Q
    ||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || |||||||    
T  23886035 ggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 23886101  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 24307431 - 24307497
Alignment:
Q  1 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 67  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||| ||||| || || |||||||    
T  24307431 ggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttaga 24307497  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23402282 - 23402348
Alignment:
Q  1 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 67  Q
    ||||||||||||||||||||||| || || || ||||| |||||||| |||||||| || |||||||    
T  23402282 ggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga 23402348  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 34662108 - 34662045
Alignment:
Q  4 gaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 67  Q
    |||||||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| |||||||    
T  34662108 gaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga 34662045  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33216653 - 33216708
Alignment:
Q  1 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttac 56  Q
    |||||||||||||| |||||||||||||| || |||||||||||||| ||||||||    
T  33216653 ggtgaattggccaaacatgctgtttctgagggtaccaaggctgtgaccaagtttac 33216708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 45576413 - 45576477
Alignment:
Q  3 tgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 67  Q
    ||||||||| ||||||| ||||||||| || ||||| |||||||| || || |||||||||||||    
T  45576413 tgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga 45576477  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47317490 - 47317554
Alignment:
Q  1 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctctta 65  Q
    |||||||||||||| |||| ||||||||| || ||||| |||||||| |||||||| || |||||    
T  47317490 ggtgaattggccaaacatgttgtttctgagggtaccaaagctgtgaccaagtttactagttctta 47317554  T

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