View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15646_low_4 (Length: 532)

Name: NF15646_low_4
Description: NF15646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15646_low_4
NF15646_low_4
[»] chr1 (4 HSPs)
chr1 (7-487)||(52082199-52082679)
chr1 (7-424)||(52092458-52092875)
chr1 (10-103)||(19468503-19468596)
chr1 (143-200)||(35901779-35901836)
[»] chr8 (7 HSPs)
chr8 (8-104)||(27922509-27922605)
chr8 (8-191)||(18315275-18315458)
chr8 (8-98)||(17636403-17636493)
chr8 (8-104)||(32151302-32151398)
chr8 (129-200)||(5767778-5767849)
chr8 (10-50)||(17628018-17628058)
chr8 (10-50)||(21235613-21235653)
[»] chr4 (16 HSPs)
chr4 (27-337)||(1754287-1754589)
chr4 (10-104)||(1548428-1548522)
chr4 (81-214)||(6006218-6006351)
chr4 (8-104)||(8187093-8187189)
chr4 (8-101)||(7307864-7307957)
chr4 (8-104)||(546914-547010)
chr4 (141-200)||(1528338-1528397)
chr4 (8-104)||(1524488-1524584)
chr4 (165-200)||(12120301-12120336)
chr4 (10-104)||(553480-553574)
chr4 (8-74)||(12121459-12121525)
chr4 (29-74)||(640946-640991)
chr4 (7-104)||(3438567-3438663)
chr4 (8-72)||(532222-532286)
chr4 (8-104)||(1513409-1513505)
chr4 (8-104)||(8184032-8184128)
[»] chr5 (5 HSPs)
chr5 (8-104)||(32267476-32267572)
chr5 (8-100)||(41889556-41889648)
chr5 (13-103)||(41901542-41901632)
chr5 (31-104)||(20478107-20478180)
chr5 (63-218)||(12845480-12845635)
[»] chr6 (12 HSPs)
chr6 (8-104)||(6432162-6432258)
chr6 (7-106)||(6423216-6423315)
chr6 (30-99)||(6585261-6585330)
chr6 (31-106)||(6426510-6426585)
chr6 (12-103)||(14802338-14802429)
chr6 (31-104)||(6394865-6394938)
chr6 (8-101)||(6410010-6410103)
chr6 (31-101)||(10579761-10579831)
chr6 (36-104)||(6402861-6402929)
chr6 (20-104)||(6594620-6594704)
chr6 (10-50)||(12102321-12102361)
chr6 (20-104)||(14820694-14820778)
[»] chr3 (7 HSPs)
chr3 (8-104)||(51113783-51113879)
chr3 (8-104)||(51120895-51120991)
chr3 (12-97)||(33714861-33714946)
chr3 (31-104)||(13470757-13470830)
chr3 (23-200)||(37580837-37581014)
chr3 (137-199)||(514859-514921)
chr3 (21-159)||(33708989-33709127)
[»] chr2 (3 HSPs)
chr2 (8-90)||(32785774-32785856)
chr2 (40-98)||(44575529-44575587)
chr2 (12-104)||(45245091-45245183)


Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 7 - 487
Target Start/End: Complemental strand, 52082679 - 52082199
Alignment:
7 caatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtgggat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
52082679 caatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggat 52082580  T
107 actacaattggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
52082579 actacaattggacttggaacggtgtgatcatatcacagagaaaggagtcgggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggat 52082480  T
207 tgtcataatgtgtgtgctgatgttaatttctggatggtgatggtaattttaaggtcatcattgagaaaaattatggctccctctcatttttgtcctagtg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
52082479 tgtcataatgtgtgtgctgatgttaatttctggatggtgatggtaattttaaggtcatcattgagaaaaattatggctccctctcatttttgtcctagtg 52082380  T
307 acgacaagtggaaacctttattgaaccatggatgccttgttttctagtattctgaaagtcataaaactattatttgaaatgttatcttcatcacaacatt 406  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
52082379 acgacaagtggaaacctttattgaaccttggatgccttgttttctagtattctgaaagtgataaaactattatttgaaatgttatcttcatcacaacatt 52082280  T
407 tcaatctttacttttcccatgnnnnnnnnnnnnnnnncatgacatatattaaagaaagaattgtagtttggttgatgatta 487  Q
    |||||||||||||||||||||                ||||||||||||||||||||||| ||||||||||||||||||||    
52082279 tcaatctttacttttcccatgttttgtttttctttttcatgacatatattaaagaaagaaatgtagtttggttgatgatta 52082199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 424
Target Start/End: Complemental strand, 52092875 - 52092458
Alignment:
7 caatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtgggat 106  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |    
52092875 caatgaactttcaagtttccaaattggaggtgttgaacttggcaaagacaaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgggct 52092776  T
107 actacaattggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |  | | |    
52092775 actacaattggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgtagta-aaaactgcacacgattgagagagataaatatacgaggt 52092677  T
207 tgtcataatgtgtgtgctgatgttaatttctggatggtgatggtaattttaaggtcatcattgagaaaa----attatggctccctctcatttttgtcct 302  Q
    |||| | | ||||||| ||||||||||||||||| | |||||||| ||| ||||||||||||||||||     ||||||||||||||||||||||||       
52092676 tgtcgtgaggtgtgtgttgatgttaatttctggacgatgatggtattttcaaggtcatcattgagaaattaagattatggctccctctcatttttgt--- 52092580  T
303 agtgacgacaagtggaaacctttattgaaccatggatgccttgttttctagtattctgaaagtcataaaactattatttgaaatgttatcttcatcacaa 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||    
52092579 agtgacgacaagtggaaacctttattgaaccatggatgccttgttttctagtattctgaaagtgataaaacagttatttgaaatgttatcttcatcacaa 52092480  T
403 catttcaatctttacttttccc 424  Q
    |||||||||||| | |||||||    
52092479 catttcaatcttcatttttccc 52092458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 19468503 - 19468596
Alignment:
10 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtgg 103  Q
    ||||||||  |||| ||||  ||||||||||||| |||||| | |||||  |||||||||||||| | ||||||||||||| ||  ||||||||    
19468503 tgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaagaactgttgtgg 19468596  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 35901779 - 35901836
Alignment:
143 agagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttg 200  Q
    ||||||||||||||| || ||  |||||||||| |||| |||||||||||||||||||    
35901779 agagaaaggagtgagacaagtcatagaaaactgtacacaactgagagagataaatttg 35901836  T

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Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 27922605 - 27922509
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | |||||  ||||||||||| || | ||| ||||||||| |||||||||||||    
27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtggg 27922509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 18315275 - 18315458
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtgggata 107  Q
    |||||||||| ||||| ||||| |||||||||||||||||||| | |||||| ||||||||||| || | ||||||||||||| ||||||| || || |     
18315275 aatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggctt 18315374  T
108 ctacaattggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagag 191  Q
     | ||| ||   |||||||| |||  | || |||||||||||||||  | | | || |||||||||||||||| ||||| ||||    
18315375 ttgcaactgttattggaacgctgttgtgatgtcacagagaaaggagaaaagtatgtggtagaaaactgcacacaactgatagag 18315458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 17636403 - 17636493
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgt 98  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | |||  | |||| |||||| |||||||||||||||||| |||||||    
17636403 aatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 32151398 - 32151302
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||  ||||||||||  |||||||||| |||||||||   ||||   |||||||||||||| | ||||||||||||| ||||||| |||||    
32151398 aatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtggg 32151302  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 5767778 - 5767849
Alignment:
129 tgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttg 200  Q
    |||||| |||||||||| || ||||| | |||||| ||| | |||||||||| ||| |||||||||||||||    
5767778 tgtgattatatcacagacaagggagtcatgcacgtggtaaacaactgcacacaactcagagagataaatttg 5767849  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 17628018 - 17628058
Alignment:
10 tgaactttcaagtttccaaattggaggtgttgaacttgtca 50  Q
    |||||||| || |||| ||||||||||||||||||||||||    
17628018 tgaactttaaactttctaaattggaggtgttgaacttgtca 17628058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 21235653 - 21235613
Alignment:
10 tgaactttcaagtttccaaattggaggtgttgaacttgtca 50  Q
    |||||||| ||||| ||||| ||||||||||||||||||||    
21235653 tgaactttgaagttcccaaactggaggtgttgaacttgtca 21235613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 337
Target Start/End: Complemental strand, 1754589 - 1754287
Alignment:
27 aaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtgggatactacaattggacttggaac 126  Q
    ||||||||||||||||||||||| |||||||||||| | ||||        ||  ||||||||| |||||| | |||  |||| |||||||| || |||     
1754589 aaattggaggtgttgaacttgtcgaagacaaaaattaaggatg--------tacatgatctcaaagagttgctctggactactgcaattggatttagaaa 1754498  T
127 ggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggattgtcataatgtgtgtgctga 226  Q
      ||| || ||||||||||||||||||||| ||| ||||||||||| |||||||| |||| |||||||| |||| |  ||| |   ||||||   | |||    
1754497 aatgttataatatcacagagaaaggagtgaagcaagtagtagaaaaatgcacacgcctgaaagagataagtttgcgacattatgtcaatgtggccgttga 1754398  T
227 tgttaatttctggatggtgatggtaattttaaggtcatcattgagaaaaattatggctccctctcatttttgtcctagtgacgacaagtggaaaccttta 326  Q
    |||| |||| ||||  ||||||||| | | |||| |||  |||||||| || | | ||||| ||  ||||| |||||||||   |||||||||||| |||    
1754397 tgttgatttatggaatgtgatggtattgtcaaggccattgttgagaaagatcaagactccccctggtttttatcctagtgatagcaagtggaaaccctta 1754298  T
327 ttgaaccatgg 337  Q
    ||||| |||||    
1754297 ttgaatcatgg 1754287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 1548428 - 1548522
Alignment:
10 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||| || || ||||| |||||||||||||||||||| | ||||  ||||||||||||||| |  |||||||||||| |||||||||||||    
1548428 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 1548522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 6006351 - 6006218
Alignment:
81 gtgatctcaaggagttgttgtgggatactacaattggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacac 180  Q
    |||||||||| |||||| | |||| |||| ||| | || |||| ||| ||| || || ||||| |||| ||||||| ||| || ||||||||||||| ||    
6006351 gtgatctcaatgagttgctttgggctactgcaacttgatttgggacgttgttatgatgtcacaaagaagggagtgatgcaagtcgtagaaaactgcaaac 6006252  T
181 gactgagagagataaatttgtgggattgtcataa 214  Q
     | |||||||||||||||||  ||||||||||||    
6006251 aattgagagagataaatttgcaggattgtcataa 6006218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 8187093 - 8187189
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||| || |||||||| |||||||||||||||||||| | |||| | |||||||| ||||| | ||||  || |||| |||||||||||||    
8187093 aatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtggg 8187189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 7307957 - 7307864
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgt 101  Q
    |||||||||| ||||| ||||||||||||| |||||||||||| | ||| || ||||||||||| || |   | ||||||||| ||||||||||    
7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgt 7307864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 547010 - 546914
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||| ||||| | |||||||||||| |||||||||||   ||||   |  ||||||||||| | ||||||||||||| |||||||||||||    
547010 aatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 1528338 - 1528397
Alignment:
141 acagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttg 200  Q
    |||||||| ||||| | ||| || |||||||||||||||| |||||||||||||||||||    
1528338 acagagaatggagtcatgcaagttgtagaaaactgcacacaactgagagagataaatttg 1528397  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 1524488 - 1524584
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||| ||||| |||| |||||||||||||| ||||||   ||||   |||||||||||||| | ||| ||||||||  ||||||| |||||    
1524488 aatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtggg 1524584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 12120301 - 12120336
Alignment:
165 gtagaaaactgcacacgactgagagagataaatttg 200  Q
    |||||||||||||||| |||||||||||||||||||    
12120301 gtagaaaactgcacacaactgagagagataaatttg 12120336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 553574 - 553480
Alignment:
10 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||| |||||  |||| ||||||||||||||||||||   |||| | ||||||||||| || |  ||||||| |||| |||||||| ||||    
553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctggg 553480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 12121459 - 12121525
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaaca 74  Q
    |||||||||| ||||| ||||| | || ||||||||||||||| | |||||  ||||||||||||||    
12121459 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaaca 12121525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 640991 - 640946
Alignment:
29 attggaggtgttgaacttgtcaaagacaaaaattgatgatgaaaca 74  Q
    |||||||||||||||||||||| | |||||  ||||||||||||||    
640991 attggaggtgttgaacttgtcagatacaaacgttgatgatgaaaca 640946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 3438567 - 3438663
Alignment:
7 caatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    ||||||||||| | ||||| ||||||||||| |||| ||||||| | |||| | |||||||| ||| | |  |||| ||||||| |||||||||||||    
3438567 caatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtggg 3438663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 532286 - 532222
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaa 72  Q
    |||||||||| ||||  ||||  | |||||||||||||||||| | ||||| |||||||||||||    
532286 aatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaa 532222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 1513409 - 1513505
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||| ||||| ||||| | || |||||||||||||||   |||||  |||||||||||||| | || || ||||||| | ||||| |||||    
1513409 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtggg 1513505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 8184032 - 8184128
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||| ||||| | ||| | |||||||||||||||||| | |||| | ||||||||  | || | ||||  ||||||| |||||||||||||    
8184032 aatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtggg 8184128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 32267572 - 32267476
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||| ||||| ||||||||||||| |||||||||||| | |||| | ||||||||||| || | ||| ||||||||| |||||||||||||    
32267572 aatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtggg 32267476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 41889556 - 41889648
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttg 100  Q
    |||||||||| ||||| |||||||||||||||||||||| ||| | |||||| |||||||||||||| | |||  |||||||| |||||||||    
41889556 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttg 41889648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 41901542 - 41901632
Alignment:
13 actttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtgg 103  Q
    ||||| ||||| ||||| |||||||||||||||||||| | |||||| ||||||||||| || | ||| ||||||||| ||||||||||||    
41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtgg 41901632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 20478107 - 20478180
Alignment:
31 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||||||||||||| | |||||  ||||||| |||||||| | |||||||||||||| ||||||||||    
20478107 tggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtggg 20478180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 218
Target Start/End: Complemental strand, 12845635 - 12845480
Alignment:
63 gatgatgaaacattgtatgtgatctcaaggagttgttgtgggatactacaattggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacg 162  Q
    ||||||||| || | ||||  ||||||| ||||||||||||  || | ||||||||| |||||   ||| || || | |||||||| ||||||||||| |    
12845635 gatgatgaagcactatatgcaatctcaaagagttgttgtggtctattgcaattggacctggaaaattgtaatgatgttacagagaagggagtgaggcaag 12845536  T
163 tagtagaaaactgcacacgactgagagagataaatttgtgggattgtcataatgtg 218  Q
    | |||| ||| ||||||    |||||||||| |||||| |||||||||| ||||||    
12845535 tggtagcaaaatgcacaaagttgagagagatcaatttgagggattgtcaaaatgtg 12845480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 6432258 - 6432162
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||| ||||| ||||  || ||||||||||||||||||| ||||   |||||||||||||| | |||||||||| || || ||||||||||    
6432258 aatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtggg 6432162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 6423315 - 6423216
Alignment:
7 caatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtgggat 106  Q
    ||||||||||| ||||| ||||  |||||||||||||||||||||| |||| | ||   ||| ||||| | |||| |||||||| |||||||||||||||    
6423315 caatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggat 6423216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 6585261 - 6585330
Alignment:
30 ttggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgtt 99  Q
    |||||||| |||||||||||| | |||||  |||||||||||||| | ||||||||||||| ||||||||    
6585261 ttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgtt 6585330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 6426585 - 6426510
Alignment:
31 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtgggat 106  Q
    ||||||||||||| |||||||| ||||  |||||||||||||| || |||| |||||||| || ||||||| ||||    
6426585 tggaggtgttgaatttgtcaaacacaagcattgatgatgaaactttttatgcgatctcaaagaattgttgtcggat 6426510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 14802429 - 14802338
Alignment:
12 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtgg 103  Q
    |||||| ||||| ||||  |||| |||||||| |||||||| |||||  |||||||||||||| | |||||||| |||| || |||||||||    
14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtgg 14802338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 6394938 - 6394865
Alignment:
31 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||||||||||||||| ||||   |||||||||||||  | | ||||||||||| || ||||||||||    
6394938 tggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtggg 6394865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 6410103 - 6410010
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgt 101  Q
    |||||||||| ||||| ||||  || |||||||||||| |||||| ||||   |||||||||||||  | ||||||||||||| || |||||||    
6410103 aatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgt 6410010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 10579761 - 10579831
Alignment:
31 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgt 101  Q
    |||||||||||||||||||| | |||||| |||||||| ||||| | |||  |||||||| || |||||||    
10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgt 10579831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 6402929 - 6402861
Alignment:
36 gtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    ||||||||||||||| | || ||  |||||||||||||| | ||||||||||||| || |||| |||||    
6402929 gtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtggg 6402861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 6594620 - 6594704
Alignment:
20 agtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||| ||||| ||||||||||| |||||||||| ||| |  |||||||||| ||| |   ||||||||||| || ||||||||||    
6594620 agttcccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtggg 6594704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 12102361 - 12102321
Alignment:
10 tgaactttcaagtttccaaattggaggtgttgaacttgtca 50  Q
    |||||||| ||||| ||||| ||||||||||||||||||||    
12102361 tgaactttgaagttcccaaactggaggtgttgaacttgtca 12102321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 14820778 - 14820694
Alignment:
20 agtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||| |||| || |||||||||||||| ||||| |||||  ||||| |||||||| | ||| ||||||| | || ||||||||||    
14820778 agttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtggg 14820694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 51113783 - 51113879
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||| ||| | ||||| ||||||||||  |||||||||| ||||   |||||||||||||| | ||||||||||| | |||||||||||||    
51113783 aatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtggg 51113879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 51120895 - 51120991
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||| |||||  ||||||||||||||||||||||||  | |||| | |||||||||||| | | ||||| ||||||| ||||||| |||||    
51120895 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 51120991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 33714861 - 33714946
Alignment:
12 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttg 97  Q
    |||||| ||||||||||| |||||||| |||||||||||||  ||| |||||||||||   ||||||||| ||| |||| ||||||    
33714861 aactttgaagtttccaaactggaggtgctgaacttgtcaaactcaagaattgatgatggcgcattgtatgcgatttcaaagagttg 33714946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 13470757 - 13470830
Alignment:
31 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||||||||||||||||||| |||||  || ||||| ||||| | ||| ||||||||| || ||||||||||    
13470757 tggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtggg 13470830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 37580837 - 37581014
Alignment:
23 ttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtgggatactacaattggacttg 122  Q
    ||||||| | ||||| ||||||||||||||  ||| |||||||||| ||  ||||||||||||||||| || |||   | || | || ||| |||||||     
37580837 ttccaaactcgaggtattgaacttgtcaaactcaagaattgatgataaagtattgtatgtgatctcaatgatttgccctcggcttctgcaactggactta 37580936  T
123 gaacggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttg 200  Q
     ||   ||| || || |||||||||| |||||||| |  ||||||||||| |||| ||  ||||||||||| ||||||    
37580937 caattttgtaatgatgtcacagagaagggagtgagactagtagtagaaaaatgcatacacctgagagagattaatttg 37581014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 514859 - 514921
Alignment:
137 tatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaattt 199  Q
    |||||||||||  ||||||| ||| || ||  ||||||||||||||||||||||||| |||||    
514859 tatcacagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaattt 514921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 33708989 - 33709127
Alignment:
21 gtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtgggatactacaattggact 120  Q
    ||||||||| |||||||| ||||||||||| |  ||| |||||||||||   |||||||||  ||||||| ||||||   | || | |||||  |||||     
33708989 gtttccaaactggaggtgctgaacttgtcagactcaagaattgatgatggtgcattgtatgcaatctcaaagagttgccctcggcttctacatctggacc 33709088  T
121 tggaacggtgtgatcatatcacagagaaaggagtgaggc 159  Q
    ||||| | ||| ||||| |||| ||||| ||||||||||    
33709089 tggaaggatgtcatcatgtcacggagaagggagtgaggc 33709127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 32785774 - 32785856
Alignment:
8 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaa 90  Q
    |||||||||| ||| | ||||| | |||||||||||||||||| | |||| ||||||||||||| || | |||||||||||||    
32785774 aatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 44575529 - 44575587
Alignment:
40 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgt 98  Q
    |||| |||||||| |||| | |||||||||| ||||||||||||||||||| |||||||    
44575529 tgaatttgtcaaaaacaagagttgatgatgacacattgtatgtgatctcaaagagttgt 44575587  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 45245091 - 45245183
Alignment:
12 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaggagttgttgtggg 104  Q
    |||||| ||||| | ||| | ||||||||||| |||||| ||||||   |||||||||||||| |  |||||||||||| ||||||| |||||    
45245091 aactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtggg 45245183  T

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