View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15646_low_5 (Length: 514)
Name: NF15646_low_5
Description: NF15646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15646_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 54 - 499
Target Start/End: Original strand, 49920389 - 49920840
Alignment:
| Q |
54 |
aaggtgatgaaagtgagataatgttataggtggtggggtgatggaattggaaatcgcggagtgagagagagagttgtaacaataacaat------agcaa |
147 |
Q |
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| T |
49920389 |
aaggtgatgaaagtgagataatgttataggtggtggggtgatggaattggaaatcgcggagtgagagagagagttgtaacaatagcaatagcaatagcaa |
49920488 |
T |
|
| Q |
148 |
tggttttacactctctatgggtatgcccttccaacaatcctgctcttattcttcccaccaacaaccgtatcttcaggagggtaatccttaaccaatccaa |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49920489 |
tggttttacactctctatgggtatgcccttccaacaatcctgctcttattcttcccaccaacaaccgtatcttcaggagggtaatccttaaccaaaccaa |
49920588 |
T |
|
| Q |
248 |
atgctcctccttatccggtgatgataaaagatactattcatcttcctcttctagacgggattttgtactattaggaggaggcctcacttcactatctcta |
347 |
Q |
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| T |
49920589 |
atgttcctccttatccgatgatgataaaagatactattcatcttcctcttctagaagggattttttactattaggaggaggcctcacttcactatctcta |
49920688 |
T |
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| Q |
348 |
acaacatgctctccaatttctggtaaattcctccttcttgcatttattgtttctttttcttcattttctgctacaattcattcacaaaattctttgcctt |
447 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49920689 |
acaacatgctctccaatttctggtaaatttctccttcttgcatttattgtttctttttcttcattttctgctacaattcattcacaaaattctttgcttt |
49920788 |
T |
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| Q |
448 |
gcagtggctcttgctggagaagaagaacaagaccacaaaatggcttcttttt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49920789 |
gcagtggctcttgctggagaagaagaacaagaccacaaaatggcttcttttt |
49920840 |
T |
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