View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15646_low_8 (Length: 272)
Name: NF15646_low_8
Description: NF15646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15646_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 30963334 - 30963093
Alignment:
| Q |
21 |
gtggattggcttctatgaaaatgaattagttgttgaatgcaaatgggacacttaaatgaacatgctttcgattatttgatcactttgttgggaaaattgt |
120 |
Q |
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| T |
30963334 |
gtggattggcttctatgaaaatgaattagttgttgaatgcaaatgggacacttaaatgaacatgctttcgattatttgatcactttgttgggaaaattgt |
30963235 |
T |
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| Q |
121 |
ctacttgtttggtgatgttaacaatgctgtagtgttgatttgatagatgcttgaattggaagaggcgatttcgaatttgaagattatccatgttgctggt |
220 |
Q |
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| T |
30963234 |
ctacttgtttggtgatgttaacaatgttgtagtgttgatttgatagatgcttgaattggaagaggcgatttcgaatttgaagattatccatgttgctggt |
30963135 |
T |
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| Q |
221 |
accaaagggaaggtacttttattaattaaactttgacctatg |
262 |
Q |
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| T |
30963134 |
accaaagggaaggtacttttattaattaaactttgacctatg |
30963093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 30979146 - 30978905
Alignment:
| Q |
21 |
gtggattggcttctatgaaaatgaattagttgttgaatgcaaatgggacacttaaatgaacatgctttcgattatttgatcactttgttgggaaaattgt |
120 |
Q |
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| T |
30979146 |
gtggattggcttctatgaaaatgaattagttgttgaatgcaaatgggacacttaaatgaacatgctttcgattatttgatcactttgttgggaaaattgt |
30979047 |
T |
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| Q |
121 |
ctacttgtttggtgatgttaacaatgctgtagtgttgatttgatagatgcttgaattggaagaggcgatttcgaatttgaagattatccatgttgctggt |
220 |
Q |
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| T |
30979046 |
ctacttgtttggtgatgttaacaatgttgtagtgttgatttgatagatgcttgaattggaagaggcgatttcgaatttgaagattatccatgttgctggt |
30978947 |
T |
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| Q |
221 |
accaaagggaaggtacttttattaattaaactttgacctatg |
262 |
Q |
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| T |
30978946 |
accaaagggaaggtacttttattaattaaactttgacctatg |
30978905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 34806395 - 34806472
Alignment:
| Q |
158 |
atttgatagatgcttgaattggaagaggcgatttcgaatttgaagattatccatgttgctggtaccaaagggaaggta |
235 |
Q |
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| T |
34806395 |
attttatagatgctagatttggaggagcagatttcaaatatgaagattatccatgtagctggtaccaaagggaaggta |
34806472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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