View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15647_high_2 (Length: 507)

Name: NF15647_high_2
Description: NF15647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15647_high_2
NF15647_high_2
[»] chr7 (32 HSPs)
chr7 (339-477)||(29891336-29891477)
chr7 (227-310)||(22687708-22687791)
chr7 (227-310)||(24725521-24725604)
chr7 (226-310)||(5715292-5715375)
chr7 (222-310)||(9685283-9685371)
chr7 (226-310)||(26281352-26281436)
chr7 (226-310)||(21846469-21846552)
chr7 (227-310)||(4247358-4247441)
chr7 (227-310)||(5058531-5058614)
chr7 (227-310)||(11326388-11326471)
chr7 (227-305)||(8571250-8571328)
chr7 (227-310)||(44944889-44944976)
chr7 (234-303)||(11324988-11325057)
chr7 (226-310)||(7730386-7730469)
chr7 (227-310)||(8330089-8330172)
chr7 (227-310)||(8346577-8346660)
chr7 (227-310)||(24990115-24990198)
chr7 (72-147)||(26565527-26565602)
chr7 (227-310)||(27221420-27221503)
chr7 (222-310)||(30294177-30294262)
chr7 (226-310)||(14055253-14055337)
chr7 (226-310)||(14365281-14365365)
chr7 (227-310)||(8343844-8343927)
chr7 (222-308)||(4574475-4574561)
chr7 (84-147)||(30294327-30294391)
chr7 (231-310)||(21157822-21157901)
chr7 (227-310)||(39182262-39182344)
chr7 (250-303)||(17809440-17809493)
chr7 (225-266)||(17811393-17811434)
chr7 (117-181)||(23618573-23618642)
chr7 (82-141)||(21157672-21157732)
chr7 (222-310)||(26565667-26565755)
[»] chr6 (25 HSPs)
chr6 (222-310)||(6943499-6943587)
chr6 (227-310)||(17543784-17543867)
chr6 (233-310)||(7918431-7918508)
chr6 (226-310)||(5422791-5422875)
chr6 (227-307)||(18491081-18491161)
chr6 (234-310)||(30912463-30912539)
chr6 (227-310)||(15528154-15528237)
chr6 (227-310)||(27233321-27233404)
chr6 (228-309)||(33583774-33583855)
chr6 (234-310)||(17250059-17250135)
chr6 (233-300)||(23897823-23897890)
chr6 (253-310)||(7223521-7223578)
chr6 (234-310)||(26053347-26053423)
chr6 (234-310)||(26073400-26073476)
chr6 (227-310)||(10958231-10958314)
chr6 (227-292)||(4841963-4842026)
chr6 (272-310)||(17103204-17103242)
chr6 (72-147)||(3573870-3573946)
chr6 (237-305)||(8545019-8545087)
chr6 (82-141)||(18490783-18490843)
chr6 (235-310)||(3573984-3574059)
chr6 (227-310)||(19748335-19748418)
chr6 (227-265)||(18491005-18491043)
chr6 (272-309)||(2912336-2912373)
chr6 (275-308)||(10509115-10509148)
[»] chr4 (25 HSPs)
chr4 (226-310)||(5362006-5362090)
chr4 (227-310)||(7044729-7044812)
chr4 (227-310)||(8011260-8011343)
chr4 (227-310)||(24719519-24719602)
chr4 (222-310)||(13551661-13551749)
chr4 (238-310)||(4156765-4156837)
chr4 (82-141)||(4156933-4156992)
chr4 (227-310)||(18459752-18459835)
chr4 (232-308)||(6347113-6347189)
chr4 (72-141)||(7803174-7803245)
chr4 (72-141)||(7825128-7825199)
chr4 (227-310)||(13023569-13023653)
chr4 (227-310)||(9770114-9770197)
chr4 (72-142)||(18459596-18459667)
chr4 (234-307)||(8889233-8889306)
chr4 (72-141)||(7815725-7815796)
chr4 (338-386)||(53385332-53385380)
chr4 (72-136)||(7044847-7044912)
chr4 (241-310)||(7452422-7452491)
chr4 (227-308)||(7815561-7815642)
chr4 (249-306)||(9149801-9149858)
chr4 (225-312)||(5375664-5375751)
chr4 (82-147)||(8011126-8011191)
chr4 (226-310)||(23065006-23065090)
chr4 (234-310)||(36120826-36120902)
[»] chr3 (30 HSPs)
chr3 (227-310)||(29067286-29067369)
chr3 (222-310)||(28745772-28745860)
chr3 (227-310)||(17796379-17796462)
chr3 (227-310)||(19104819-19104902)
chr3 (227-310)||(27676358-27676441)
chr3 (226-310)||(24649732-24649816)
chr3 (227-310)||(15806550-15806632)
chr3 (227-310)||(20756041-20756124)
chr3 (248-310)||(3449356-3449418)
chr3 (233-303)||(21963438-21963508)
chr3 (233-303)||(21985874-21985944)
chr3 (227-308)||(17796272-17796353)
chr3 (227-308)||(19104712-19104793)
chr3 (222-302)||(10872985-10873065)
chr3 (226-310)||(28135724-28135808)
chr3 (227-310)||(17796488-17796571)
chr3 (227-310)||(19104928-19105011)
chr3 (233-310)||(8156181-8156258)
chr3 (226-307)||(17064326-17064407)
chr3 (91-136)||(27676522-27676567)
chr3 (82-142)||(10872854-10872916)
chr3 (233-303)||(22137287-22137357)
chr3 (82-147)||(24649597-24649663)
chr3 (272-308)||(42696870-42696906)
chr3 (231-310)||(13005929-13006008)
chr3 (227-310)||(30727735-30727818)
chr3 (272-310)||(22356142-22356180)
chr3 (248-310)||(25870441-25870503)
chr3 (222-310)||(24620239-24620330)
chr3 (151-179)||(19348482-19348510)
[»] chr8 (20 HSPs)
chr8 (227-311)||(15294671-15294755)
chr8 (227-311)||(15475040-15475124)
chr8 (227-310)||(5922051-5922134)
chr8 (227-310)||(17646995-17647078)
chr8 (227-308)||(3094297-3094378)
chr8 (226-310)||(19704498-19704583)
chr8 (227-308)||(31424167-31424248)
chr8 (226-310)||(27836507-27836591)
chr8 (227-310)||(11879602-11879685)
chr8 (227-310)||(11897018-11897101)
chr8 (231-310)||(15761487-15761566)
chr8 (232-310)||(24056617-24056695)
chr8 (249-310)||(477113-477174)
chr8 (227-300)||(22910246-22910319)
chr8 (272-308)||(23136353-23136389)
chr8 (222-310)||(45403031-45403119)
chr8 (338-377)||(31030439-31030478)
chr8 (272-310)||(9036762-9036800)
chr8 (225-266)||(6810868-6810909)
chr8 (81-142)||(8582121-8582184)
[»] chr1 (25 HSPs)
chr1 (222-310)||(21846307-21846395)
chr1 (222-310)||(42180104-42180192)
chr1 (227-310)||(23528658-23528741)
chr1 (227-310)||(25146812-25146895)
chr1 (228-310)||(18337567-18337648)
chr1 (233-311)||(19009996-19010074)
chr1 (229-310)||(9352109-9352190)
chr1 (237-310)||(30619077-30619150)
chr1 (226-310)||(41032713-41032797)
chr1 (236-310)||(9955088-9955162)
chr1 (233-311)||(12513282-12513360)
chr1 (73-147)||(17055898-17055974)
chr1 (227-309)||(27917496-27917578)
chr1 (233-310)||(12800631-12800708)
chr1 (227-308)||(13100195-13100276)
chr1 (222-310)||(18304849-18304938)
chr1 (227-310)||(13276310-13276393)
chr1 (227-310)||(14074414-14074497)
chr1 (233-310)||(9327265-9327342)
chr1 (229-301)||(8772715-8772787)
chr1 (248-310)||(34478835-34478897)
chr1 (338-400)||(38091403-38091465)
chr1 (272-310)||(47785794-47785832)
chr1 (272-305)||(16125547-16125580)
chr1 (225-306)||(17056041-17056122)
[»] chr5 (14 HSPs)
chr5 (227-310)||(43234870-43234953)
chr5 (72-141)||(24648095-24648166)
chr5 (227-310)||(23172476-23172559)
chr5 (226-310)||(18051573-18051657)
chr5 (235-310)||(18843717-18843792)
chr5 (227-310)||(20923720-20923803)
chr5 (233-310)||(22645769-22645846)
chr5 (235-310)||(21059207-21059282)
chr5 (227-310)||(38158298-38158381)
chr5 (238-310)||(19042444-19042516)
chr5 (227-310)||(19578944-19579027)
chr5 (227-304)||(27340230-27340307)
chr5 (81-111)||(3031236-3031266)
chr5 (248-312)||(20320924-20320988)
[»] scaffold0036 (1 HSPs)
scaffold0036 (227-310)||(37210-37293)
[»] scaffold0042 (1 HSPs)
scaffold0042 (226-310)||(93749-93831)
[»] chr2 (23 HSPs)
chr2 (235-310)||(1404785-1404860)
chr2 (227-310)||(31238021-31238104)
chr2 (222-307)||(15588889-15588973)
chr2 (227-310)||(16766712-16766795)
chr2 (229-310)||(19245155-19245236)
chr2 (222-310)||(23863360-23863448)
chr2 (72-147)||(25539125-25539201)
chr2 (222-310)||(30432421-30432509)
chr2 (222-310)||(36429850-36429938)
chr2 (72-133)||(5395502-5395564)
chr2 (233-310)||(1690812-1690889)
chr2 (234-310)||(15516610-15516686)
chr2 (145-181)||(19257505-19257541)
chr2 (222-310)||(24473338-24473425)
chr2 (75-142)||(13502947-13503014)
chr2 (235-310)||(15266084-15266159)
chr2 (227-266)||(34841602-34841641)
chr2 (235-310)||(35566006-35566081)
chr2 (278-308)||(15627659-15627689)
chr2 (227-310)||(19491857-19491942)
chr2 (82-147)||(19492005-19492071)
chr2 (9-54)||(35565898-35565943)
chr2 (222-310)||(5395687-5395775)
[»] scaffold0510 (1 HSPs)
scaffold0510 (233-300)||(151-218)
[»] scaffold0186 (1 HSPs)
scaffold0186 (238-310)||(8445-8517)
[»] scaffold0048 (2 HSPs)
scaffold0048 (75-142)||(48680-48748)
scaffold0048 (234-310)||(48839-48915)
[»] scaffold0603 (1 HSPs)
scaffold0603 (231-310)||(9068-9147)
[»] scaffold0417 (1 HSPs)
scaffold0417 (227-310)||(7499-7582)
[»] scaffold0115 (1 HSPs)
scaffold0115 (239-310)||(35115-35186)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 339 - 477
Target Start/End: Original strand, 29891336 - 29891477
Alignment:
Q  339 gaagttttaccttgtacccctacatctataccctcacccttacattttccttgaattgcctacattacccttcaatataaagttcaaacaccaatatatt 438  Q
    |||||||||||||||||||||||||| |||||| ||||| | |||||| ||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  29891336 gaagttttaccttgtacccctacatcaatacccccacccctgcattttacttgaattgccaacattacccttcaatataaagttcaaacaccaaattatt 29891435  T
Q  439 ---ttttgctccaaaatttgccggttcgccctacgtgaaaac 477  Q
       |||| |||||||||||| | |||  ||||||||||||||    
T  29891436 ttatttttctccaaaatttgtctgtttaccctacgtgaaaac 29891477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 22687708 - 22687791
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||| |||||||||||||||||||| |||| ||||||  ||  ||||||||||||||||||||||||||||||||||||||    
T  22687708 attctgcgatggatttgagttgttgaagttgaagaaagtcgcaaattcctgaattttaggatttaagtcgggattttgacaaca 22687791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 24725521 - 24725604
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||||||||||||||||||||||||| ||||||  || ||| || ||||||||||||||||| ||||||||||||||    
T  24725521 attctactatggatttgagttgttgaaggtgaagaaagtcgtaaaatcttggattttaggatttaagtctggattttgacaaca 24725604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 5715375 - 5715292
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| ||||| |||| |||||||||||||| | ||||||  || |||||||||||||||||||||||||||||||||||||||    
T  5715375 aattctactatgaatttaagttgttgaaggtgta-aaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaaca 5715292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 9685283 - 9685371
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||  ||||||||||||| |||||||||||| ||||||  || ||||| ||||||||||| ||||||| |||||||||||||    
T  9685283 ttgaaattctaatatggatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctaaattttaggatataagtcgagattttgacaaca 9685371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 26281352 - 26281436
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| | |||||||||||| |||||||||||| ||||||  || ||||||||||||| |||||||||||| ||||||||||||    
T  26281352 aattctacaatggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaaca 26281436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 21846469 - 21846552
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| |||||||| ||||| |||||| ||||| ||||||  || |||||||||||||| ||||||||||||||||||||||||    
T  21846469 aattctactatggatgtgagtcgttgaatgtgaa-aaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaaca 21846552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 4247441 - 4247358
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||| |||||||||| ||||| |||||   || ||||||||||||||||||||| | |||||||||||||||    
T  4247441 attctactatggatttaagttgttgaaagtgaagaaagttacaaaatcctgaattttaggatttaaattgggattttgacaaca 4247358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 5058614 - 5058531
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||||||||  || |||||||||||| ||| ||  || || ||||||||||||||||||||||||||||||||||||    
T  5058614 attctactatggatttaggtcgttgaaggtgaagaaaatcgcaaaattctgaattttaggatttaagtcgggattttgacaaca 5058531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 11326471 - 11326388
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||| ||| | |||||||||| ||||||  || ||||| ||||||||||||||||| |||||||||||||||    
T  11326471 attctactatggattttagtcgctgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaaca 11326388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 8571328 - 8571250
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttga 305  Q
    ||||| |||||||||||||| ||| |||||||| ||||||  || |||||| |||||| ||||||||||||||||||||    
T  8571328 attctactatggatttgagtcgttaaaggtgaagaaagtcgcaaaatcctggattttatgatttaagtcgggattttga 8571250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 44944889 - 44944976
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaat----aaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||||| | ||||||||||| |    ||||||  || |||||||||||||||||||||||||||||||||||||||    
T  44944889 attctactatggatttgaatcgttgaaggtgagtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaaca 44944976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 11325057 - 11324988
Alignment:
Q  234 tatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggatttt 303  Q
    ||||||||||||| |||||||||||| ||| ||  || ||| ||||||||||||||||||||||||||||    
T  11325057 tatggatttgagtcgttgaaggtgaagaaaatcccaaaatcatgaattttaggatttaagtcgggatttt 11324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 7730386 - 7730469
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| || ||||||||||||||| |||||||| ||||||  || | |||| ||||||||||||||||| ||||||||||||||    
T  7730386 aattctactgtggatttgagttgttaaaggtgaagaaagtcgcaaaa-cctggattttaggatttaagtcaggattttgacaaca 7730469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 8330089 - 8330172
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||||| | |||||||||||| ||||||  || ||| |||||||||| ||||| ||| ||||||||||||||    
T  8330089 attctactatggatttgaatcgttgaaggtgaagaaagtcgcaaaatcatgaattttagaatttaggtcaggattttgacaaca 8330172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 8346577 - 8346660
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||||||| |||||||||||| ||||||  || ||||| |||||||  ||||| ||| ||||||||||||||    
T  8346577 attctactatggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctaaattttaatatttaggtcaggattttgacaaca 8346660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 24990115 - 24990198
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||||||| |||| |||| || ||||||  || ||||| |||||| ||||||||||||| ||||||||||||    
T  24990115 attctactatggatttgagtcgttggaggtaaagaaagtcacaaaatcctaaatttttggatttaagtcggaattttgacaaca 24990198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 26565527 - 26565602
Alignment:
Q  72 aatgactcaatttaaagtacacaaaatacttatacataaacaactaaaaaatggacaaaatccttcaaaacacttt 147  Q
    ||||||||| |||||||| |||||||||||||||||||||  |||||||| | |||||||| |||| |||| ||||    
T  26565527 aatgactcagtttaaagtccacaaaatacttatacataaatgactaaaaagtagacaaaatacttccaaacccttt 26565602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 27221503 - 27221420
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||| |||||||| ||||||| |||| ||||||  || |||||||||||||| |||||||| |||||||| ||||||    
T  27221503 attctactatgtatttgagtcgttgaagatgaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttaacaaca 27221420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 30294262 - 30294177
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||| |||||||||||||||| |   |||||||||||| ||  || |||||| |||||||||||||||| |||||||||||||||    
T  30294262 ttgagattttgctatggatttgagtcg---aaggtgaataaaatcacaaaatcctggattttaggatttaagttgggattttgacaaca 30294177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 14055337 - 14055253
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| |||| ||||||||| |||||||||||| ||||||  || ||| || |||||||||| ||||| |||||||| ||||||    
T  14055337 aattctactatagatttgagtcgttgaaggtgaagaaagtcgcaaaatcttggattttaggatataagtggggattttcacaaca 14055253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 14365365 - 14365281
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| |||| ||||||||| |||||||||||| ||||||  || ||| || |||||||||| ||||| |||||||| ||||||    
T  14365365 aattctactatagatttgagtcgttgaaggtgaagaaagtcgcaaaatcttggattttaggatataagtggggattttcacaaca 14365281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 8343844 - 8343927
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||||||| |||||||||||| ||||||  || |||| | ||||||||||||| | |  |||||||||||||    
T  8343844 attctactatggatttgagtcgttgaaggtgaagaaagtcgcaaaatccaggattttaggatttaggccaagattttgacaaca 8343927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 4574561 - 4574475
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaa 308  Q
    |||||||||||| ||| |||||| | ||||||||||| |||||||  || || ||| |||||||||||||||||  |||||| ||||    
T  4574561 ttgaaattctgcaatgaatttgaatcgttgaaggtgagtaaagtcgcaaaattctggattttaggatttaagtcatgattttcacaa 4574475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 30294391 - 30294327
Alignment:
Q  84 taaagtacacaaaatacttatacataaacaactaaaaaa-tggacaaaatccttcaaaacacttt 147  Q
    |||||| ||||||||| |||||||||||  ||||||||| ||||||||||| |||||||| ||||    
T  30294391 taaagtccacaaaatagttatacataaatgactaaaaaaatggacaaaatctttcaaaacccttt 30294327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 21157822 - 21157901
Alignment:
Q  231 tgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||||| |||| | |||| |||||||  || | ||||||||||| |||||||||| | |||| |||||||    
T  21157822 tgctatggatttgagtcgttgtaagtgagtaaagtcgcaaaaccctgaattttaagatttaagtcagaatttcgacaaca 21157901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 39182344 - 39182262
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||| ||| |||||||||||| || |||  || |||||  ||||||||||||||||| |||||||| |||||    
T  39182344 attctactatggatttcagtcgttgaaggtgaagaa-gtcgcaaaatcctagattttaggatttaagtcaggattttgtcaaca 39182262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 17809440 - 17809493
Alignment:
Q  250 tgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggatttt 303  Q
    ||||||||| |||||||  || |||||||||||| |||||||||||| ||||||    
T  17809440 tgaaggtgagtaaagtcacaaaatcctgaattttgggatttaagtcgcgatttt 17809493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 17811434 - 17811393
Alignment:
Q  225 aaattctgctatggatttgagttgttgaaggtgaataaagtc 266  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  17811434 aaattctactatggatttgagtcgttgaaggtgaaaaaagtc 17811393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 23618573 - 23618642
Alignment:
Q  117 aaaaaatggacaaaatccttcaaaacact-----tttgcatggatttcacaattttgtgcgattttgaat 181  Q
    |||||||| ||||||||||||||||  ||     |||| ||||||||||| |||||||||||||||||||    
T  23618573 aaaaaatgaacaaaatccttcaaaatcctacgattttgaatggatttcacgattttgtgcgattttgaat 23618642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 21157672 - 21157732
Alignment:
Q  82 tttaaagtacacaaaatacttatacataaacaact-aaaaaatggacaaaatccttcaaaa 141  Q
    ||||||||  ||||||||||||||||||||  ||| ||||| |||||||||| ||||||||    
T  21157672 tttaaagtctacaaaatacttatacataaatgactcaaaaactggacaaaattcttcaaaa 21157732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 26565667 - 26565755
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||||||||| |||||| | ||| || |||||||||||   || || |||||||||| |||||||| | | ||||||||||||    
T  26565667 ttgagattctgctatgaatttgaatcgttaaaagtgaataaagttacaaaattctgaattttatgatttaaggcagaattttgacaaca 26565755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 6943499 - 6943587
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||| |||| ||||||||| |||||||||||| ||||||  || |||||||||||||||||||||||||||||||||||||||    
T  6943499 ttgagattctactatcgatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaaca 6943587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 17543784 - 17543867
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||||||| |||||| ||||| ||||||  || ||||||||||||||||||||||||| |||||||||||||    
T  17543784 attctactatggatttgagtcgttgaaagtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgagattttgacaaca 17543867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 7918431 - 7918508
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||| ||| |||||||||||| ||||||  || |||||||||||||| ||||||||||||||||||||||||    
T  7918431 ctatggatttaagtcgttgaaggtgaaaaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaaca 7918508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 5422791 - 5422875
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| |||||| ||||||||| ||||||||||||||||||   || ||| |||||||||| ||||||||||||||||||||||||    
T  5422791 aattttgctatagatttgagtcgttgaaggtgaataaagttgcaaaatcatgaattttagtatttaagtcgggattttgacaaca 5422875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 18491081 - 18491161
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgaca 307  Q
    |||||||||||||||||||| |||||||||||||||||    || || ||| |||||||||||||||||||||||||||||    
T  18491081 attctgctatggatttgagtcgttgaaggtgaataaagatgcaaaattctggattttaggatttaagtcgggattttgaca 18491161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 30912463 - 30912539
Alignment:
Q  234 tatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||||| |||||||||||| ||||||  || ||||| ||||||||||||||||| |||||||||||||||    
T  30912463 tatggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaaca 30912539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 15528154 - 15528237
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||| |||| ||| ||| |||||||| ||||||  || |||||||||||||||||||||||||||||||||||||||    
T  15528154 attctactatgaatttaagtcgttaaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaaca 15528237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 27233321 - 27233404
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||| ||| |||||||||||| ||||||  || |||||| ||||||||||||||||||| | ||||||||||    
T  27233321 attctactatggatttaagtcgttgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcggtagtttgacaaca 27233404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 33583774 - 33583855
Alignment:
Q  228 ttctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaac 309  Q
    ||||||||||||||||||| ||||||| | | |||||||| || |||||| ||||| ||| |||||||| ||||||||||||    
T  33583774 ttctgctatggatttgagtcgttgaagctaattaaagtctaaaaatcctggattttgggacttaagtcgcgattttgacaac 33583855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 17250135 - 17250059
Alignment:
Q  234 tatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||| ||| |||||||||||| |||||   || |||||| ||||||||||||||||||||||||| ||||||    
T  17250135 tatggatttaagtcgttgaaggtgaagaaagttgcaaaatcctggattttaggatttaagtcgggattttaacaaca 17250059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 23897890 - 23897823
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggat 300  Q
    |||||||||||||| |||||| ||||| ||||||  || |||||| ||||||||||||||||||||||    
T  23897890 ctatggatttgagtcgttgaacgtgaagaaagtcgcaaaatcctgcattttaggatttaagtcgggat 23897823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 7223578 - 7223521
Alignment:
Q  253 aggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||| ||||||  || ||||| |||||||||||||||||||||||||||||||||    
T  7223578 aggtgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaaca 7223521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 26053347 - 26053423
Alignment:
Q  234 tatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||||||  ||||||||||| ||||||  || |||||  |||||| |||||||||||||||||||||||||    
T  26053347 tatgaatttgagtcattgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaaca 26053423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 26073400 - 26073476
Alignment:
Q  234 tatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||||||  ||||||||||| ||||||  || |||||  |||||| |||||||||||||||||||||||||    
T  26073400 tatgaatttgagtcattgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaaca 26073476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 10958231 - 10958314
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||| |||||||||| |  |||||||||| | |||||  || ||||||||||||  ||||||||||| |||||||||||||    
T  10958231 attctgcaatggatttgaatccttgaaggtgagtcaagtcgcaaaatcctgaattttgagatttaagtcgcgattttgacaaca 10958314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 4841963 - 4842026
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaa 292  Q
    ||||||||| |||||||||| |||||||||||||||||||  || ||||  |||||||||||||||    
T  4841963 attctgctacggatttgagtcgttgaaggtgaataaagtcgcaaaatcc--aattttaggatttaa 4842026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 17103242 - 17103204
Alignment:
Q  272 atcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  17103242 atcctgaattttaagatttaagtcgggattttgacaaca 17103204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 3573870 - 3573946
Alignment:
Q  72 aatgactcaatttaaagtacacaaaatacttatacataaacaact-aaaaaatggacaaaatccttcaaaacacttt 147  Q
    |||||||||  ||||||| ||||||||||||| |||||||  ||| |||||||||| ||||| ||||||||| ||||    
T  3573870 aatgactcagattaaagtccacaaaatacttaaacataaatgactaaaaaaatggaaaaaattcttcaaaacccttt 3573946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 8545019 - 8545087
Alignment:
Q  237 ggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttga 305  Q
    |||||| | |||||||| |||| |||||||  || ||||| ||||||||||||||| ||||||||||||    
T  8545019 ggatttaaattgttgaaagtgagtaaagtcgcaaaatcctaaattttaggatttaaatcgggattttga 8545087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 18490783 - 18490843
Alignment:
Q  82 tttaaagtacacaaaatacttatacataaacaact-aaaaaatggacaaaatccttcaaaa 141  Q
    |||||||| |||||||||||| ||||||||  ||| |||||||||| ||||||||||||||    
T  18490783 tttaaagttcacaaaatacttgtacataaatgactaaaaaaatggataaaatccttcaaaa 18490843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 3573984 - 3574059
Alignment:
Q  235 atggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||| |||||||||||| ||||||   | || ||| ||||||| ||||||||||| ||||||| ||||    
T  3573984 atggatttgagtcgttgaaggtgaagaaagtcgcgaaattctggattttagaatttaagtcggaattttgaaaaca 3574059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 19748418 - 19748335
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||| ||||||||||  || |||||||| ||| ||| || |||||| ||| || |||||||||||||||||||| ||||    
T  19748418 attctactacggatttgagtcattaaaggtgaagaaaatctcaaaatcctggattgtaagatttaagtcgggattttgaaaaca 19748335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 18491005 - 18491043
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagt 265  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  18491005 attctgctatggatttgagtcattgaaggtgaataaagt 18491043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 2912336 - 2912373
Alignment:
Q  272 atcctgaattttaggatttaagtcgggattttgacaac 309  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  2912336 atcctaaattttaagatttaagtcgggattttgacaac 2912373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 10509115 - 10509148
Alignment:
Q  275 ctgaattttaggatttaagtcgggattttgacaa 308  Q
    ||||||||||||||||||||| ||||||||||||    
T  10509115 ctgaattttaggatttaagtctggattttgacaa 10509148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 5362006 - 5362090
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| |||||||||||||| ||||||| |||| ||||||  || |||||||||||||||||||||||||||||||||||||||    
T  5362006 aattctactatggatttgagtcgttgaagatgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaaca 5362090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 7044812 - 7044729
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||||||||| ||||||||||||||||||   || ||| || ||||||||||||||||||||||||||||||||    
T  7044812 attctgctatggatttgagtcgttgaaggtgaataaagttgcaaaatcatggattttaggatttaagtcgggattttgacaaca 7044729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 8011260 - 8011343
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||||||| |||||||||||| ||||||  || ||||||||||||||||||| ||| |||||||||||||||    
T  8011260 attctactatggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttaggatttgagttgggattttgacaaca 8011343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 24719602 - 24719519
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||||||||| |||||||||||||||||||  || ||| |||||||||| | |||||||| |||||||||||||    
T  24719602 attctgctatggatttgagtcgttgaaggtgaataaagtcgcaaaatcttgaattttagaaattaagtcgagattttgacaaca 24719519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 13551661 - 13551749
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||  ||||||||||||| |||||||||||| ||||||  || ||||| ||||||||||| ||||||| |||||||||||||    
T  13551661 ttgaaattctaatatggatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctaaattttaggatataagtcgagattttgacaaca 13551749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 4156837 - 4156765
Alignment:
Q  238 gatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||| ||| |||||||||||||||  || ||||| ||||||| |||||||||||||||||||||||||    
T  4156837 gatttgagtcgttaaaggtgaataaagtcataaaatcctaaattttaagatttaagtcgggattttgacaaca 4156765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 4156992 - 4156933
Alignment:
Q  82 tttaaagtacacaaaatacttatacataaacaactaaaaaatggacaaaatccttcaaaa 141  Q
    |||||||| |||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  4156992 tttaaagttcacaaaatacttatacataaatgaataaaaaatggacaaaatccttcaaaa 4156933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 18459752 - 18459835
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||||||||| |||||| ||||||| ||||  || ||| || |||||||||||| |||||||||||| ||||||    
T  18459752 attctgctatggatttgagtcgttgaaagtgaatacagtcgcaaaatcttggattttaggattttagtcgggatttttacaaca 18459835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 6347113 - 6347189
Alignment:
Q  232 gctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaa 308  Q
    ||||||||||||||| ||||||||| ||||||||   || |||||| |||||||||||||||| || ||||||||||    
T  6347113 gctatggatttgagtcgttgaaggtaaataaagttgcaaaatcctggattttaggatttaagttggaattttgacaa 6347189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 7803245 - 7803174
Alignment:
Q  72 aatgactcaatttaaagtacacaaaatacttatacataaacaactaaa--aaatggacaaaatccttcaaaa 141  Q
    ||||||||| |||||||| |||||||||||||||||||||  ||||||  |||||||||||||| |||||||    
T  7803245 aatgactcagtttaaagtccacaaaatacttatacataaatgactaaattaaatggacaaaatcgttcaaaa 7803174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 7825199 - 7825128
Alignment:
Q  72 aatgactcaatttaaagtacacaaaatacttatacataaacaactaaa--aaatggacaaaatccttcaaaa 141  Q
    ||||||||| |||||||| |||||||||||||||||||||  ||||||  |||||||||||||| |||||||    
T  7825199 aatgactcagtttaaagtccacaaaatacttatacataaatgactaaattaaatggacaaaatcgttcaaaa 7825128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 13023653 - 13023569
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaatttt-aggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||||||||||||  ||||||||||| ||||||  || ||||| |||||| ||||||||||| |||||||||||||||    
T  13023653 attctactatggatttgagtcattgaaggtgaagaaagtcgcaaaatcctaaatttttaggatttaagttgggattttgacaaca 13023569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 9770197 - 9770114
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||||||| |||||||||||| ||||||  || |||||  ||||||| |||||||||| |||||| ||||||    
T  9770197 attctactatggatttgagtcgttgaaggtgaaaaaagtcacaaaatcctagattttagaatttaagtcgagattttaacaaca 9770114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 18459596 - 18459667
Alignment:
Q  72 aatgactcaatttaaagtacacaaaatacttatacataaacaacta-aaaaatggacaaaatccttcaaaac 142  Q
    ||||||||  |||||||| |||||||||||||||||||||  | || |||||||||||||||||||||||||    
T  18459596 aatgactcggtttaaagtccacaaaatacttatacataaatgattacaaaaatggacaaaatccttcaaaac 18459667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 8889306 - 8889233
Alignment:
Q  234 tatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgaca 307  Q
    |||| |||||||| ||||| |||||| ||| ||  || |||||| |||||||||||||||||||||||||||||    
T  8889306 tatgaatttgagtcgttgatggtgaagaaattcacaaaatcctggattttaggatttaagtcgggattttgaca 8889233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 7815796 - 7815725
Alignment:
Q  72 aatgactcaatttaaagtacacaaaatacttatacataaacaactaaa--aaatggacaaaatccttcaaaa 141  Q
    ||||||||| |||||||| |||| ||||||||||||||||  ||||||  |||||||||||||| |||||||    
T  7815796 aatgactcagtttaaagtccacataatacttatacataaatgactaaattaaatggacaaaatcgttcaaaa 7815725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 53385380 - 53385332
Alignment:
Q  338 ggaagttttaccttgtacccctacatctataccctcacccttacatttt 386  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||||    
T  53385380 ggaaattttaccttatacccctacatctatactctcacccttacatttt 53385332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 7044912 - 7044847
Alignment:
Q  72 aatgactcaatttaaagtacacaaaatacttatacataaacaact-aaaaaatggacaaaatcctt 136  Q
    ||||||||| ||||||||  |||| |||||||||||||||  ||| ||||||||||||||||||||    
T  7044912 aatgactcagtttaaagtcgacaagatacttatacataaatgactaaaaaaatggacaaaatcctt 7044847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 7452491 - 7452422
Alignment:
Q  241 ttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| ||||||||||||||||||   || || ||| ||||||| ||||||||||||||||| ||||||    
T  7452491 ttgagtcgttgaaggtgaataaagttgcaaaattctggattttagaatttaagtcgggattttcacaaca 7452422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 7815642 - 7815561
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaa 308  Q
    ||||| |||||| ||||||| | | ||| |||||||||||  || || ||| ||||||||||||||||||||||||| ||||    
T  7815642 attctactatgggtttgagtcgcttaagctgaataaagtcacaaaatgctgtattttaggatttaagtcgggattttaacaa 7815561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 9149801 - 9149858
Alignment:
Q  249 ttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgac 306  Q
    ||||||||  ||||||||  || ||||| |||||||||||||||||||||||||||||    
T  9149801 ttgaaggtagataaagtcgcaaaatcctaaattttaggatttaagtcgggattttgac 9149858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 5375751 - 5375664
Alignment:
Q  225 aaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaacatg 312  Q
    |||||||  |||| |||| ||| |||||||||||| ||||||  || ||| | |||||||| ||||| || |||||||||||||||||    
T  5375751 aaattctattatgaattttagtcgttgaaggtgaagaaagtcgcaaaatcttaaattttagaatttaggttgggattttgacaacatg 5375664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 8011126 - 8011191
Alignment:
Q  82 tttaaagtacacaaaatacttatacataaacaactaaaaaatggacaaaatccttcaaaacacttt 147  Q
    |||||||| |||||||||||||||||||||  | |||| ||  |||||||| ||||||||| ||||    
T  8011126 tttaaagtccacaaaatacttatacataaatgaataaagaaatgacaaaattcttcaaaacccttt 8011191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 23065006 - 23065090
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| | |||||||||||| |||||| ||||| |||||   || || ||| ||||||| |||||||||||| |||| ||||||    
T  23065006 aattctacaatggatttgagtcgttgaatgtgaagaaagttacaaaatactggattttagaatttaagtcggggttttaacaaca 23065090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 36120902 - 36120826
Alignment:
Q  234 tatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||| ||| |||||||||||| ||| ||  || ||||| |||||||  |||||| |||| ||||||||||||    
T  36120902 tatggatttaagtcgttgaaggtgaagaaaatcgcaaaatcctaaattttaaaatttaaatcggaattttgacaaca 36120826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 29067369 - 29067286
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||||||| |||||||||||| ||||||  || |||||||||||||| ||||||||||||||||||||||||    
T  29067369 attctactatggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaaca 29067286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 28745860 - 28745772
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||| ||||| |||||||| |||||||||||| ||||||  || ||||| ||||||||||||||| |||||||||||||||||    
T  28745860 ttgagattctactatgaatttgagtcgttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaaatcgggattttgacaaca 28745772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 17796462 - 17796379
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||| |||||||||||||||| |||||||||||  || |||||  |||||| |||||||||||| ||||||||||||    
T  17796462 attctgctatgaatttgagttgttgaagatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaaca 17796379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 19104902 - 19104819
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||| |||||||||||||||| |||||||||||  || |||||  |||||| |||||||||||| ||||||||||||    
T  19104902 attctgctatgaatttgagttgttgaagatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaaca 19104819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 27676441 - 27676358
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||||||||||||  | ||||||||||||||||  || |||||| |||||| |||||||||| ||||||||||||||    
T  27676441 attctgctatggatttgagtcatagaaggtgaataaagtcgcaaaatcctgcattttacgatttaagtcaggattttgacaaca 27676358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 24649732 - 24649816
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| |||||||||||||| ||||||||||||  |||||  || |||||  |||||| |||||||||||||||||||||||||    
T  24649732 aattctactatggatttgagtcgttgaaggtgaagcaagtcaaaaaatcctagattttacgatttaagtcgggattttgacaaca 24649816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 15806550 - 15806632
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||||||||||||  ||||||||||||||||||  || || ||| ||| ||||||||||||| ||||||||||||||    
T  15806550 attctgctatggatttgagtcattgaaggtgaataaagtcgcaaaattctggattgtaggatttaagtc-ggattttgacaaca 15806632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 20756124 - 20756041
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||||||||||||  ||||||||||| ||| ||  || |||||||||||||  ||||||||||||||||||||||||    
T  20756124 attctactatggatttgagtcattgaaggtgaagaaaatcgcaaaatcctgaattttataatttaagtcgggattttgacaaca 20756041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 3449356 - 3449418
Alignment:
Q  248 gttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||| || ||||||  || |||||||||||||||||||||||||||||||||||||||    
T  3449356 gttgaaggtaaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaaca 3449418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 21963508 - 21963438
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggatttt 303  Q
    |||||||||||||| ||| |||||||| ||||||  || ||| ||||||||||||||||||||||||||||    
T  21963508 ctatggatttgagtcgttcaaggtgaagaaagtcgtaaaatcttgaattttaggatttaagtcgggatttt 21963438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 21985944 - 21985874
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggatttt 303  Q
    |||||||||||||| ||| |||||||| ||||||  || ||| ||||||||||||||||||||||||||||    
T  21985944 ctatggatttgagtcgttcaaggtgaagaaagtcgtaaaatcttgaattttaggatttaagtcgggatttt 21985874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 17796353 - 17796272
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaa 308  Q
    ||||||||||| |||| |||||||||||||||||||||||  || |||||  |||||| ||||||||| || ||||||||||    
T  17796353 attctgctatgaattttagttgttgaaggtgaataaagtcacaaaatcctagattttatgatttaagttggaattttgacaa 17796272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 19104793 - 19104712
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaa 308  Q
    ||||||||||| |||| |||||||||||||||||||||||  || |||||  |||||| ||||||||| || ||||||||||    
T  19104793 attctgctatgaattttagttgttgaaggtgaataaagtcacaaaatcctagattttatgatttaagttggaattttgacaa 19104712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 10872985 - 10873065
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattt 302  Q
    |||| |||||||||||||||||||| |||||||||||||||  ||  || |||||| |||||||||||| | |||||||||    
T  10872985 ttgagattctgctatggatttgagtcgttgaaggtgaataatatcacaaaatcctggattttaggatttcaatcgggattt 10873065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 28135808 - 28135724
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||||||||||||||   |||| ||||||||||||  || ||||||||||||| ||||||| |||| ||||||||||||    
T  28135808 aattttgctatggatttgagtcactgaaagtgaataaagtcgcaaaatcctgaattttacgatttaaatcggaattttgacaaca 28135724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 17796571 - 17796488
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||| |||| |||||||||||||||||||||||  || |||||  |||||| ||||||| |||  ||||||||||||    
T  17796571 attctgctatgaatttaagttgttgaaggtgaataaagtcgaaaaatcctagattttatgatttaattcgaaattttgacaaca 17796488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 19105011 - 19104928
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||| |||| |||||||||||||||||||||||  || |||||  |||||| ||||||| |||  ||||||||||||    
T  19105011 attctgctatgaatttaagttgttgaaggtgaataaagtcgaaaaatcctagattttatgatttaattcgaaattttgacaaca 19104928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 8156181 - 8156258
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||||||  ||||||||||| ||| ||  || || ||||||||||| |||||||| |||||||||||||||    
T  8156181 ctatggatttgagtcattgaaggtgaaaaaaatcgtaaaattctgaattttagaatttaagttgggattttgacaaca 8156258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 17064407 - 17064326
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgaca 307  Q
    |||||| ||||| ||| |||| |||||||||||| | | ||  || ||||||||||||| ||||||||||||||||||||||    
T  17064407 aattctactatgaattggagtcgttgaaggtgaacacaatcgcaaaatcctgaattttaagatttaagtcgggattttgaca 17064326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 27676567 - 27676522
Alignment:
Q  91 cacaaaatacttatacataaacaactaaaaaatggacaaaatcctt 136  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  27676567 cacaaaatacttatacataaatgactaaaaaatggacaaaatcctt 27676522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 10872854 - 10872916
Alignment:
Q  82 tttaaagtacacaaaatacttatacataaacaactaaaa--aatggacaaaatccttcaaaac 142  Q
    |||||||| ||||||||||||| |||||||  |||||||  ||||||||||||||||||||||    
T  10872854 tttaaagtccacaaaatacttaaacataaatgactaaaaaaaatggacaaaatccttcaaaac 10872916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 22137357 - 22137287
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggatttt 303  Q
    |||||||||||||  ||| |||||||| ||||||  || ||| |||||||||||||||||||| |||||||    
T  22137357 ctatggatttgaggcgttcaaggtgaagaaagtcgtaacatcttgaattttaggatttaagtcaggatttt 22137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 24649597 - 24649663
Alignment:
Q  82 tttaaagtacacaaaatacttatacataaacaact-aaaaaatggacaaaatccttcaaaacacttt 147  Q
    |||||||| |||||||||||||||||||||  ||| |||||||||| ||||| ||||||||| ||||    
T  24649597 tttaaagttcacaaaatacttatacataaatgactaaaaaaatggataaaattcttcaaaacccttt 24649663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 42696906 - 42696870
Alignment:
Q  272 atcctgaattttaggatttaagtcgggattttgacaa 308  Q
    ||||||||||||| |||||||||||||||||||||||    
T  42696906 atcctgaattttatgatttaagtcgggattttgacaa 42696870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 13006008 - 13005929
Alignment:
Q  231 tgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||||||  |||| |||||||||||||||  || ||  ||||||||   |||||||||| |||||||||||||    
T  13006008 tgctatggatttgaaatgttaaaggtgaataaagtcgcaaaattatgaattttgaaatttaagtcgagattttgacaaca 13005929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 30727735 - 30727818
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||| ||||||||| |||||||||||| ||||||  || || | | |||||| |||||||||| ||||||||| ||||    
T  30727735 attctactatagatttgagtcgttgaaggtgaagaaagtcgtaaaattcaggattttaagatttaagtcaggattttgataaca 30727818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 22356142 - 22356180
Alignment:
Q  272 atcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  22356142 atcctgaattttaggatttaagtcggaattttgataaca 22356180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 25870441 - 25870503
Alignment:
Q  248 gttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||| |||| ||||||  || ||| || |||||||||||||||||| |||||||||||||    
T  25870441 gttgaagatgaagaaagtcacaaaatcttggattttaggatttaagtcgagattttgacaaca 25870503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 24620239 - 24620330
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctg---aatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||| || || |||||||| |||||||||||| ||||||     || ||| | |||||||||||||||||||| ||||||||||||    
T  24620239 ttgagattctactgtgaatttgagtcgttgaaggtgaagaaagtcgtcgcaaaatcttaaattttaggatttaagtcggaattttgacaaca 24620330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 179
Target Start/End: Complemental strand, 19348510 - 19348482
Alignment:
Q  151 atggatttcacaattttgtgcgattttga 179  Q
    |||||||||||||||||||||||||||||    
T  19348510 atggatttcacaattttgtgcgattttga 19348482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 15294755 - 15294671
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaacat 311  Q
    ||||| |||| ||||||||| |||||||||||| ||||||  || |||||||||||||||||||||||||||||||| |||||||    
T  15294755 attctactatcgatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaacat 15294671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 15475124 - 15475040
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaacat 311  Q
    ||||| |||| ||||||||| |||||||||||| ||||||  || |||||||||||||||||||||||||||||||| |||||||    
T  15475124 attctactatcgatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaacat 15475040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 5922134 - 5922051
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||| | ||| |||||||||||| ||||||  || |||||| ||||||||||||||||||||||||||||||||    
T  5922134 attctactatggatataagtcgttgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcgggattttgacaaca 5922051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 17647078 - 17646995
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||| |||||||| |||||||||||| ||||||  || ||||||||||||| |||||||||||| ||||||||||||    
T  17647078 attctactatgaatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaaca 17646995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 308
Target Start/End: Original strand, 3094297 - 3094378
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaa 308  Q
    ||||| |||||||||||||| |||||||||||| |||||   || ||||||||||||| |||||||||||  ||||||||||    
T  3094297 attctactatggatttgagtcgttgaaggtgaagaaagtagcaaaatcctgaattttaagatttaagtcgaaattttgacaa 3094378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 19704498 - 19704583
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcc-tgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| |||||||||||||| |||||||||||| ||||||  || | || ||||||||| ||||||||| |||||||||||||||    
T  19704498 aattctactatggatttgagtcgttgaaggtgaagaaagtcgcaaaaaccttgaattttaagatttaagttgggattttgacaaca 19704583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 31424248 - 31424167
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaa 308  Q
    ||||| |||||||||||||| |||||| | ||| ||||||  || |||||||||||||| ||||||||| ||||||||||||    
T  31424248 attcttctatggatttgagtcgttgaaagggaagaaagtcgtaaaatcctgaattttagaatttaagtcaggattttgacaa 31424167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 27836507 - 27836591
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| |||||||||| ||||||||||||||||||||  |  || ||||||||||||||||| |||||  | ||||||||||||    
T  27836507 aattctactatggatttcagttgttgaaggtgaataaaaccgcaaaatcctgaattttaggatctaagtttgaattttgacaaca 27836591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 11879685 - 11879602
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||| ||||||||| |||||| ||||| |||||   || |||||||||||||||||||||||| | ||||||||||||    
T  11879685 attctactatagatttgagtcgttgaaagtgaagaaagttgcaaaatcctgaattttaggatttaagtcagaattttgacaaca 11879602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 11897101 - 11897018
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||| ||||||||| |||||| ||||| |||||   || |||||||||||||||||||||||| | ||||||||||||    
T  11897101 attctactatagatttgagtcgttgaaagtgaagaaagttgcaaaatcctgaattttaggatttaagtcagaattttgacaaca 11897018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 15761487 - 15761566
Alignment:
Q  231 tgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||| |||||||| ||||||||| |||||| ||  || |||||| | |||||||||||||||| |||||||||||||    
T  15761487 tgctatgaatttgagtcgttgaaggtaaataaactcacaaaatcctggagtttaggatttaagtcgagattttgacaaca 15761566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 24056617 - 24056695
Alignment:
Q  232 gctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||||||| ||| || ||||||||||||  || |||||| |||||||||||||||||  |||||||| ||||    
T  24056617 gctatggatttgagtcgttaaatgtgaataaagtcgcaaaatcctggattttaggatttaagtcaagattttgataaca 24056695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 477113 - 477174
Alignment:
Q  249 ttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||| ||||||  || |||||| ||||||||||||||||| ||||||||||||||    
T  477113 ttgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcaggattttgacaaca 477174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 22910246 - 22910319
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggat 300  Q
    ||||| |||| ||||||||| |||||| ||||| ||||||  || ||||| |||||||||||||||||||||||    
T  22910246 attctactatagatttgagtcgttgaatgtgaagaaagtcgtaaaatcctaaattttaggatttaagtcgggat 22910319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 23136389 - 23136353
Alignment:
Q  272 atcctgaattttaggatttaagtcgggattttgacaa 308  Q
    |||||||||||||||||||||||||||||||||||||    
T  23136389 atcctgaattttaggatttaagtcgggattttgacaa 23136353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 45403119 - 45403031
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||| |||||||||| ||| ||||||||| || ||||||  || ||| || ||||||| |||||||||| |||||||||||||    
T  45403119 ttgagattcttctatggatttaagtcgttgaaggtcaagaaagtcgcaaaatcttggattttagaatttaagtcgcgattttgacaaca 45403031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 377
Target Start/End: Complemental strand, 31030478 - 31030439
Alignment:
Q  338 ggaagttttaccttgtacccctacatctataccctcaccc 377  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  31030478 ggaagttataccttgtacccctacatatataccctcaccc 31030439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 9036762 - 9036800
Alignment:
Q  272 atcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||||||||||||| || |||||||||||    
T  9036762 atcctgaattttaggatttaagtcaggtttttgacaaca 9036800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 6810909 - 6810868
Alignment:
Q  225 aaattctgctatggatttgagttgttgaaggtgaataaagtc 266  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  6810909 aaattctactatggatttgagtcgttgaaggtgaagaaagtc 6810868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 8582184 - 8582121
Alignment:
Q  81 atttaaagtacacaaaatacttatacataaacaact--aaaaaatggacaaaatccttcaaaac 142  Q
    ||||||||| ||||||||| |||||||||||  | |  |||||||| |||||||||||||||||    
T  8582184 atttaaagtccacaaaatatttatacataaattattaaaaaaaatgaacaaaatccttcaaaac 8582121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 21846307 - 21846395
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||| |||||||||||||| |||||||||||| ||||||  || |||||| |||||||||||||| |||||||||||||||||    
T  21846307 ttgagattctactatggatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctggattttaggatttaactcgggattttgacaaca 21846395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 42180104 - 42180192
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||| |||||||||||| | |||||||| ||| ||||||  || |||||||||||||| |||||||| |||||||||||||||    
T  42180104 ttgaaattctactatggatttgactcgttgaaggggaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttgacaaca 42180192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 23528741 - 23528658
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||||||| ||||||| |||| ||||||  || ||||||||||||| ||||||||| |||||||||||||||    
T  23528741 attctactatggatttgagtcgttgaagatgaagaaagtcgcaaaatcctgaattttaagatttaagttgggattttgacaaca 23528658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 25146812 - 25146895
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||| |||||||| |||||||||||| ||||||  || || ||||||||||||||||||||| ||||||||||||||    
T  25146812 attctactatgaatttgagtcgttgaaggtgaagaaagtcgcaaaattctgaattttaggatttaagtcaggattttgacaaca 25146895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 310
Target Start/End: Original strand, 18337567 - 18337648
Alignment:
Q  228 ttctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||||||||||| ||||||||||||||||||   || |||||| |||||||| | |||||||||||||||||||||    
T  18337567 ttctgctatggatttgagtcgttgaaggtgaataaagttgcaaaatcctggattttagg-tataagtcgggattttgacaaca 18337648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 19009996 - 19010074
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaacat 311  Q
    |||||||||| |||  ||||||||||| ||||||  || |||||||||||||||||||||||| |||||||||||||||    
T  19009996 ctatggatttaagtcattgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtccggattttgacaacat 19010074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 9352109 - 9352190
Alignment:
Q  229 tctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||| |||||||||  ||||||||||| ||||||  || | |||| ||||||||||||||||||||||||||||||||    
T  9352109 tctgctatagatttgagtctttgaaggtgaagaaagtcgcaaaaccctggattttaggatttaagtcgggattttgacaaca 9352190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 30619150 - 30619077
Alignment:
Q  237 ggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||| |||||||||||| ||| ||  || |||||| ||||||||||||||||||||||||||||||||    
T  30619150 ggatttgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaagtcgggattttgacaaca 30619077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 41032713 - 41032797
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| |||||||||||||| |||||||||||| ||| ||  || |||||||||| || ||||||||||| |||||||||||||    
T  41032713 aattctactatggatttgagtcgttgaaggtgaagaaaatcgcaaaatcctgaattctacgatttaagtcgagattttgacaaca 41032797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 9955088 - 9955162
Alignment:
Q  236 tggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||| ||| |||||||||||| ||||||  || ||||| ||||||||||||||||| |||||||||||||||    
T  9955088 tggatttaagtcgttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaaca 9955162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 12513360 - 12513282
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaacat 311  Q
    |||||||||||||| ||||||| |||| ||||||  || |||||  ||| |||||||||||||||||||||||||||||    
T  12513360 ctatggatttgagtcgttgaagctgaagaaagtcgcaaaatcctagattgtaggatttaagtcgggattttgacaacat 12513282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 17055898 - 17055974
Alignment:
Q  73 atgactcaatttaaagtacacaaaatacttatacataaacaacta--aaaaatggacaaaatccttcaaaacacttt 147  Q
    ||||||||||||||||| |||||||||||||||||||||  ||||  |||||| |||||||| ||||||||| ||||    
T  17055898 atgactcaatttaaagtccacaaaatacttatacataaatgactaacaaaaatcgacaaaattcttcaaaacccttt 17055974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 27917496 - 27917578
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaac 309  Q
    ||||||||||| ||||| |||||||||||| |||||| ||  || |||||  |||| || |||||||||||||||||||||||    
T  27917496 attctgctatgaatttgggttgttgaaggtaaataaaatcgcaaaatcctagatttcagaatttaagtcgggattttgacaac 27917578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 12800631 - 12800708
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||||||| |||||| ||||| ||||||  || ||||| ||||||||||||||||| |||||||| ||||||    
T  12800631 ctatagatttgagtcgttgaatgtgaagaaagtcgtaaaatcctaaattttaggatttaagttgggattttcacaaca 12800708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 13100276 - 13100195
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaa 308  Q
    ||||| |||||||||||||| |||||| ||||| ||||||  || |||||  ||||||| |||||||| |||||||||||||    
T  13100276 attctactatggatttgagtcgttgaacgtgaagaaagtcgtaaaatcctcgattttagaatttaagttgggattttgacaa 13100195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 18304849 - 18304938
Alignment:
Q  222 ttgaaattctgctatggatttgagttgtt-gaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||| ||||| |||||||| ||| ||||||||| ||||||  || || ||| |||||||||||||||| |||||||||||||||    
T  18304849 ttgagattctactatgaatttgagtcgtttgaaggtgaagaaagtcgcaaaatactggattttaggatttaagttgggattttgacaaca 18304938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 13276310 - 13276393
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||||||||  || ||||||| |||| ||||||  || |||||  |||||||||||||| |||||||||||||||||    
T  13276310 attctactatggatttaggtcgttgaagatgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaaca 13276393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 14074414 - 14074497
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| || ||||||||||| ||||||  |||| ||||||  || |||||  ||||||||||||||| ||||||||||||||||    
T  14074414 attctactctggatttgagtcgttgaacatgaagaaagtcgcaaaatcctacattttaggatttaagacgggattttgacaaca 14074497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 9327265 - 9327342
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||||||| |||||||||| | ||||||  || | ||| |||||||||||||||||| ||||||| ||||||    
T  9327265 ctatagatttgagtcgttgaaggtgtagaaagtcgcaaaaccctaaattttaggatttaagtcaggattttaacaaca 9327342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 8772787 - 8772715
Alignment:
Q  229 tctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggatt 301  Q
    |||||||||||||||||||||||||| |  | ||||||  || || ||| ||||| |||||||||||||||||    
T  8772787 tctgctatggatttgagttgttgaagctacacaaagtcgcaaaattctggattttgggatttaagtcgggatt 8772715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 34478835 - 34478897
Alignment:
Q  248 gttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||| ||||||  || ||||  ||||||| |||||||||||||||||| ||||||    
T  34478835 gttgaaggtgaagaaagtcacaaaatcccaaattttaagatttaagtcgggattttaacaaca 34478897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 38091403 - 38091465
Alignment:
Q  338 ggaagttttaccttgtacccctacatctataccctcacccttacattttccttgaattgccta 400  Q
    |||| ||||||| | |||||||| || |||||||||||||||||| ||| | |||||||||||    
T  38091403 ggaaattttaccctatacccctaaatttataccctcacccttacaatttacatgaattgccta 38091465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 47785832 - 47785794
Alignment:
Q  272 atcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||||||||| || |||||||||||||||    
T  47785832 atcctgaattttaggatttatgttgggattttgacaaca 47785794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 16125547 - 16125580
Alignment:
Q  272 atcctgaattttaggatttaagtcgggattttga 305  Q
    |||||||||||||||||||||||| |||||||||    
T  16125547 atcctgaattttaggatttaagtcaggattttga 16125580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 17056041 - 17056122
Alignment:
Q  225 aaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgac 306  Q
    ||||||| |||||||| ||||| |||||||||| | ||| |   || |||||| |||||||||||||| || ||||||||||    
T  17056041 aaattctactatggatctgagtcgttgaaggtggagaaaattgcaaaatcctggattttaggatttaaatcaggattttgac 17056122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 43234953 - 43234870
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||| ||| |||||||||||| ||||||  || ||||||||||||||||||||||| |||||||||||||||    
T  43234953 attctactatggatttaagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagttgggattttgacaaca 43234870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 24648166 - 24648095
Alignment:
Q  72 aatgactcaatttaaagtacacaaaatacttatacataaacaactaaa--aaatggacaaaatccttcaaaa 141  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||||  ||||||||||||||||||||||    
T  24648166 aatgactcaatttaaagtccacaaaatacttatacataaatgactaaaataaatggacaaaatccttcaaaa 24648095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 23172476 - 23172559
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||| ||| ||||||| |||| ||||||  || ||||| |||||||||||||||||||||||||||||||||    
T  23172476 attctactatggatttaagtcgttgaagatgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaaca 23172559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 18051573 - 18051657
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| |||| ||||||||| ||||||| |||| ||||||  || |||||  ||||||||||||||||||||||||||||||||    
T  18051573 aattctactatagatttgagtcgttgaagttgaagaaagtcgcaaaatcctatattttaggatttaagtcgggattttgacaaca 18051657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 18843792 - 18843717
Alignment:
Q  235 atggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||| |||||||||||| ||||||  || |||||||||| ||||||||||||||| ||||| ||||||    
T  18843792 atggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattataggatttaagtcggaattttaacaaca 18843717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 20923803 - 20923720
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||||||||  || |||||||||||| ||||||  || || ||| ||||||||||||||||||||||||||||||||    
T  20923803 attctactatggatttaggtcgttgaaggtgaagaaagtcgcaaaattctggattttaggatttaagtcgggattttgacaaca 20923720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 22645769 - 22645846
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||| | | |||||||||||| ||||||  || || ||| ||||||||||||||||||||||||||||||||    
T  22645769 ctatggatttaaatcgttgaaggtgaagaaagtcgcaaaatactggattttaggatttaagtcgggattttgacaaca 22645846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 21059207 - 21059282
Alignment:
Q  235 atggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||| |||||| ||||| ||||||  || |||||  |||||||||||||| |||||||||||||||||    
T  21059207 atggatttgagtcgttgaaagtgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaaca 21059282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 38158298 - 38158381
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| || |||||||||||||||||| || || ||||||  || |||||  ||||||||||||||||||| ||||||||||||    
T  38158298 attctactctggatttgagttgttgaaagtcaagaaagtcgcaaaatcctagattttaggatttaagtcggaattttgacaaca 38158381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 19042444 - 19042516
Alignment:
Q  238 gatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||| |||||||||||| ||||||  || ||| | |||||||| |||||||| |||||||||||||||    
T  19042444 gatttgagtcgttgaaggtgaagaaagtcacaaaatcttaaattttagaatttaagttgggattttgacaaca 19042516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 19579027 - 19578944
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| |||||||||| ||| |||||||||||| ||| ||  || |||||| |||||| ||||||||| || ||||||||||||    
T  19579027 attctactatggatttaagtcgttgaaggtgaagaaaatcgcaaaatcctggattttatgatttaagttggaattttgacaaca 19578944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 27340230 - 27340307
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttg 304  Q
    ||||| |||| ||||||||| ||||||| |||| ||||||  || ||| | ||||||| |||||||||||||||||||    
T  27340230 attctactatagatttgagtcgttgaagatgaagaaagtcgcaaaatcataaattttatgatttaagtcgggattttg 27340307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 111
Target Start/End: Complemental strand, 3031266 - 3031236
Alignment:
Q  81 atttaaagtacacaaaatacttatacataaa 111  Q
    |||||||||||||||||||||||||||||||    
T  3031266 atttaaagtacacaaaatacttatacataaa 3031236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 20320988 - 20320924
Alignment:
Q  248 gttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaacatg 312  Q
    |||||||||||| |||||   || ||| | |||||||||||||| || |||||||||||||||||    
T  20320988 gttgaaggtgaagaaagttgcaaaatcttaaattttaggatttaggttgggattttgacaacatg 20320924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 37210 - 37293
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||||||||||||||||||||||||||||| |   || || ||||||||||  ||||||||||| ||||||||||||    
T  37210 attctgctatggatttgagttgttgaaggtgaataaaattgcaaaattctgaattttaaaatttaagtcggcattttgacaaca 37293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 93749 - 93831
Alignment:
Q  226 aattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||| |||||||||||||||||||| |||||| ||| ||  || || ||| ||||||||||||||||||||||||||||||||    
T  93749 aattcttctatggatttgagttgttgagggtgaagaaaatc--aaaattctggattttaggatttaagtcgggattttgacaaca 93831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 1404860 - 1404785
Alignment:
Q  235 atggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||| ||| |||||||||||| ||||||  || ||||| |||||||| ||||||||||||||||||||||||    
T  1404860 atggatttaagtcgttgaaggtgaagaaagtcacaaaatcctaaattttagaatttaagtcgggattttgacaaca 1404785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 31238021 - 31238104
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||| |||||||| |||||||||||| |||||   || |||||  ||||||||||||||||||||||||||||||||    
T  31238021 attctactatgaatttgagtcgttgaaggtgaagaaagtggcaaaatcctagattttaggatttaagtcgggattttgacaaca 31238104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 15588889 - 15588973
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgaca 307  Q
    |||| ||||| ||||| ||||||||||||||||||||| |||| |  || ||||||||||||| || |||||||||||||||||||    
T  15588889 ttgagattctactatgtatttgagttgttgaaggtgaagaaagacgcaaaatcctgaattttaaga-ttaagtcgggattttgaca 15588973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 16766795 - 16766712
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||||||| | |||||||||||||||| ||  || ||||| ||||||| ||||||||||   ||||||||||||    
T  16766795 attctgctatggatttgattcgttgaaggtgaataaaatcgtaaaatcctaaattttaagatttaagtcaaaattttgacaaca 16766712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 19245236 - 19245155
Alignment:
Q  229 tctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||||| | | | ||| ||| |||||||  || |||||||||||||  ||||||||||||||||||||||||    
T  19245236 tctgctatggatttgaatcgctaaagatgagtaaagtcgtaaaatcctgaattttaaaatttaagtcgggattttgacaaca 19245155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 23863360 - 23863448
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||| |||||||||| ||| |||||| ||||| ||||||  || || ||  ||||||| ||||||||||||||||||||||||    
T  23863360 ttgagattctactatggatttcagtcgttgaaagtgaagaaagtcgcaaaattctcgattttagaatttaagtcgggattttgacaaca 23863448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 25539125 - 25539201
Alignment:
Q  72 aatgactcaatttaaagtacacaaaatacttatacataaacaact-aaaaaatggacaaaatccttcaaaacacttt 147  Q
    ||||||||| |||||||| ||||||||||||||| |||||  ||| |||||||||||||||| || |||||| ||||    
T  25539125 aatgactcagtttaaagtccacaaaatacttataaataaatgactaaaaaaatggacaaaattctacaaaacccttt 25539201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 30432509 - 30432421
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||| |||||||||||||| |||||||| ||| ||||||  || |||||  ||||||| |||||| || ||||||||||||||    
T  30432509 ttgagattctactatggatttgagtcgttgaaggcgaagaaagtcgaaaaatcctagattttagaatttaaatcaggattttgacaaca 30432421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 36429938 - 36429850
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||| ||||| | |||||| |||||||||||| ||||||  || |||||  ||| |||||||||||| |||||||||||||||    
T  36429938 ttgagattctcctatgaacttgagtcgttgaaggtgaagaaagtcgcaaaatcctagattataggatttaagttgggattttgacaaca 36429850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 5395502 - 5395564
Alignment:
Q  72 aatgactcaatttaaagtacacaaaatactt-atacataaacaactaaaaaatggacaaaatc 133  Q
    |||||| ||||||||||| ||| |||||||| |||||||||  ||||||||||||||||||||    
T  5395502 aatgacccaatttaaagtccaccaaatactttatacataaatgactaaaaaatggacaaaatc 5395564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 1690812 - 1690889
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||| ||||| || ||||||||| ||||||  || ||||| ||||||| ||||||||||||  |||||||||||    
T  1690812 ctatggatctgagtcgtcgaaggtgaagaaagtcacaaaatcctaaattttaagatttaagtcggagttttgacaaca 1690889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 15516610 - 15516686
Alignment:
Q  234 tatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| |||||| |||||||||||||||||||||  || || |||||| ||| ||||||||| | |||||| ||||||    
T  15516610 tatgaatttgaattgttgaaggtgaataaagtcgcaaaatgctgaatattaagatttaagttgcgattttaacaaca 15516686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 19257505 - 19257541
Alignment:
Q  145 ttttgcatggatttcacaattttgtgcgattttgaat 181  Q
    ||||| |||||||||||||||||||||||||||||||    
T  19257505 ttttgaatggatttcacaattttgtgcgattttgaat 19257541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 24473425 - 24473338
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||| |||||||| | ||||||||||| |||| ||  || |||||||||||| ||| |||||||  ||||| |||||||    
T  24473425 ttgaaattctgctacggatttgaat-gttgaaggtgagtaaaatcgcaaaatcctgaattttgggacttaagtcacgatttcgacaaca 24473338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 13502947 - 13503014
Alignment:
Q  75 gactcaatttaaagtacacaaaatacttatacataaacaactaaaaaatggacaaaatccttcaaaac 142  Q
    |||||| |||||| | |||||||||||||||||||||  || |||||||| || ||||||| ||||||    
T  13502947 gactcagtttaaactccacaaaatacttatacataaatgacaaaaaaatgaactaaatcctccaaaac 13503014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 15266159 - 15266084
Alignment:
Q  235 atggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||| |  |||||| ||||||||||   || ||||||||||||||||||||| ||  |||||||||||||    
T  15266159 atggatttgaatcattgaagatgaataaagttacaaaatcctgaattttaggatttaaatcatgattttgacaaca 15266084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 34841641 - 34841602
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtc 266  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  34841641 attctcctatggatttgagtcgttgaaggtgaataaagtc 34841602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 35566006 - 35566081
Alignment:
Q  235 atggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||||  |||||  |||| ||||||  || ||||||||||||  ||||||||| |||||||||||||||    
T  35566006 atggatttgagtcattgaatatgaagaaagtcgcaaaatcctgaattttgtgatttaagttgggattttgacaaca 35566081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 308
Target Start/End: Complemental strand, 15627689 - 15627659
Alignment:
Q  278 aattttaggatttaagtcgggattttgacaa 308  Q
    |||||||||||||||||||||||||||||||    
T  15627689 aattttaggatttaagtcgggattttgacaa 15627659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 19491942 - 19491857
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattt--taggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||||||||| ||| ||| |||| ||||||  || |||||  ||||  |||||||||| ||| |||||||||||||    
T  19491942 attctgctatggatttgagtcgtttaagatgaagaaagtcgcaaaatcctagattttataggatttaattcgagattttgacaaca 19491857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 19492071 - 19492005
Alignment:
Q  82 tttaaagtacacaaaatacttatacataaacaactaa-aaaatggacaaaatccttcaaaacacttt 147  Q
    |||||||| |||| ||||||||||||||||  ||||| |||||||| ||||| ||||||||| ||||    
T  19492071 tttaaagtccacagaatacttatacataaatgactaacaaaatggataaaattcttcaaaacccttt 19492005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 35565898 - 35565943
Alignment:
Q  9 tactcaatatatgttataaattgtatataacaataaatgactttgt 54  Q
    |||| ||||||||||||||||||||||||   ||||||||||||||    
T  35565898 tactaaatatatgttataaattgtatatagtcataaatgactttgt 35565943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 5395687 - 5395775
Alignment:
Q  222 ttgaaattctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||| ||||||||||||||||||||  || ||| |||||||||||  || |||||  |||||| |||||| |||   ||||||||||||    
T  5395687 ttgagattctgctatggatttgagtcatttaagatgaataaagtcgcaaaatcctatattttatgatttaggtcaaaattttgacaaca 5395775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 151 - 218
Alignment:
Q  233 ctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggat 300  Q
    |||||||||||||| |||||| ||||| ||||||  || |||||| ||||||||||||||||||||||    
T  151 ctatggatttgagtcgttgaacgtgaagaaagtcgcaaaatcctgcattttaggatttaagtcgggat 218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 8517 - 8445
Alignment:
Q  238 gatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||| |||||||||||| ||||||  || ||| || |||||||||||||||| |||||||||||||||    
T  8517 gatttaagtcgttgaaggtgaagaaagtcgcaaaatcgtggattttaggatttaagtagggattttgacaaca 8445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 48680 - 48748
Alignment:
Q  75 gactcaatttaaagtacacaaaatacttatacataaacaacta-aaaaatggacaaaatccttcaaaac 142  Q
    |||||| |||||||| ||||||||| |||||||||||  |||| ||||||| |||||||||||||||||    
T  48680 gactcagtttaaagtccacaaaataattatacataaatgactagaaaaatgaacaaaatccttcaaaac 48748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 48839 - 48915
Alignment:
Q  234 tatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||||||||||| ||||||||||||||||||   || || ||  ||||||||||||||||||| ||||| ||||||    
T  48839 tatggatttgagtcgttgaaggtgaataaagttgcaaaattctagattttaggatttaagtcggaattttcacaaca 48915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 9068 - 9147
Alignment:
Q  231 tgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||||||||||| |||||||||||||||| ||  || |||||  ||||||  |||||| || ||||||||||||||    
T  9068 tgctatggatttgagtcgttgaaggtgaataaaatcacaaaatcctacattttaaaatttaaatcaggattttgacaaca 9147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 7499 - 7582
Alignment:
Q  227 attctgctatggatttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    ||||| ||||||||||   | ||||||||| || ||||||  || |||||||||||||| ||||||||||||||| | ||||||    
T  7499 attctactatggattttgttcgttgaaggtaaagaaagtcgcaaaatcctgaattttagaatttaagtcgggattctaacaaca 7582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 35115 - 35186
Alignment:
Q  239 atttgagttgttgaaggtgaataaagtctgaatatcctgaattttaggatttaagtcgggattttgacaaca 310  Q
    |||||||| ||| ||||||||||||||   || ||  |||||||||| |||||||||| |||||||||||||    
T  35115 atttgagtcgttaaaggtgaataaagttccaaaattatgaattttagaatttaagtcgagattttgacaaca 35186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University