View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15647_high_5 (Length: 410)
Name: NF15647_high_5
Description: NF15647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15647_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Complemental strand, 49783507 - 49783104
Alignment:
| Q |
7 |
ggagcaatcttagaggtggaggagcgaacagcctcatatctccgacgtgctgctggccgtggaagattctctggcacgatggtttcgaggggattgtttc |
106 |
Q |
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| T |
49783507 |
ggagcaatcttagaggtggag---cgaacagtctcatatctccgacgtgctgctggccgtggaagattctctggcacgatggtttcgaggggattgtttc |
49783411 |
T |
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| Q |
107 |
cttgccaagaggggcacatccttttctggctccatttggccgcaccaccaaccaaaaacacatgctcatcatcatcatctattgaatttgacatggccac |
206 |
Q |
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| T |
49783410 |
cttgccaagaggggcacatccttttctggctccatttggccgcaccaccaaccaaaaacacatgctcatcatcatcatctattgaatttgacatggccac |
49783311 |
T |
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| Q |
207 |
caacatggtattctccttagccatagcttcatgttccaatgacactgaattgttgaattgtagtccaattatagagaagcacgaagccactcctatcaca |
306 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49783310 |
caacatggtattctccttagccacagcttcatgttccaatgacactgaattgttgaattgtagtccaattatagagaagcacgaagccactcctatcaca |
49783211 |
T |
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| Q |
307 |
acacaccgccttctccagcatccactgtttt---tctccctttatttacatccaacaaaatttaactaatcaacttaatagacatgatcatatgatctac |
403 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49783210 |
acacaccgccttctccagcatccactgtttttgatctccctttatttacatccaacaaaatgtaactaatcaacttaatagacatgatcatatgatctac |
49783111 |
T |
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| Q |
404 |
taattaa |
410 |
Q |
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| T |
49783110 |
taattaa |
49783104 |
T |
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