View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15647_low_10 (Length: 312)
Name: NF15647_low_10
Description: NF15647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15647_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 25 - 302
Target Start/End: Original strand, 8368315 - 8368592
Alignment:
| Q |
25 |
ctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368315 |
ctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttc |
8368414 |
T |
|
| Q |
125 |
attattttctgaatgaaaactattgttgcttcttctagatgannnnnnngtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcata |
224 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368415 |
attattttctgaatgaaaactattgttgcttcttctagatgatttttttgtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcata |
8368514 |
T |
|
| Q |
225 |
actcctaacaaaggaagtggataagctctatcaagagctagaacttcttgaatagtatcctttatatattcctctgtg |
302 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368515 |
actcctaacaaaggtagtggataagctctatcaagagctagaacttcttgaatagtatcctttatatattcctctgtg |
8368592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 25 - 302
Target Start/End: Complemental strand, 8401095 - 8400818
Alignment:
| Q |
25 |
ctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttc |
124 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401095 |
ctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttc |
8400996 |
T |
|
| Q |
125 |
attattttctgaatgaaaactattgttgcttcttctagatgannnnnnngtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcata |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8400995 |
attattttctgaatgaaaactattgttgcttcttctagatgatttttttgtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcata |
8400896 |
T |
|
| Q |
225 |
actcctaacaaaggaagtggataagctctatcaagagctagaacttcttgaatagtatcctttatatattcctctgtg |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8400895 |
actcctaacaaaggtagtggataagctctatcaagagctagaacttcttgaatagtatcctttatatattcctctgtg |
8400818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 25 - 302
Target Start/End: Complemental strand, 8422672 - 8422395
Alignment:
| Q |
25 |
ctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422672 |
ctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttc |
8422573 |
T |
|
| Q |
125 |
attattttctgaatgaaaactattgttgcttcttctagatgannnnnnngtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcata |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422572 |
attattttctgaatgaaaactattgttgcttcttctagatgatttttttgtaggcctccaatttgcaggttcatatttttgagggaatttttcaatcata |
8422473 |
T |
|
| Q |
225 |
actcctaacaaaggaagtggataagctctatcaagagctagaacttcttgaatagtatcctttatatattcctctgtg |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422472 |
actcctaacaaaggtagtggataagctctatcaagagctagaacttcttgaatagtatcctttatatattcctctgtg |
8422395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 55331029 - 55331091
Alignment:
| Q |
189 |
gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagct |
251 |
Q |
| |
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||||||| ||||||| ||| |||||||||| |||||| ||||| |||||||||||||||||| |
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| T |
55331029 |
gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct |
55331091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 55336466 - 55336526
Alignment:
| Q |
191 |
aggttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagct |
251 |
Q |
| |
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||||||||||||| ||| || ||||||| |||| ||||||||| |||||||||||||||| |
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| T |
55336466 |
aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct |
55336526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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