View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15647_low_11 (Length: 276)
Name: NF15647_low_11
Description: NF15647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15647_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 18733355 - 18733105
Alignment:
| Q |
10 |
aagaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaatttt |
109 |
Q |
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| T |
18733355 |
aagaatatggttaggttcttacgactcagccgtaaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaatttt |
18733256 |
T |
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| Q |
110 |
cctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaacccgaaaaga |
209 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18733255 |
cctaatgatcctccgtacattgccggaggaagatccatgacacatgctgagattaagaccgctgcagcttcttttgctaattcgggtcaacccgaaaata |
18733156 |
T |
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| Q |
210 |
cttcgtttgaaacaccgtcatcattggaggggacggcaacaacattgttgt |
260 |
Q |
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| T |
18733155 |
ctccgtttgaaacaccgtcatcatcggaggggactgcaacaacattgttgt |
18733105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 18730585 - 18730335
Alignment:
| Q |
10 |
aagaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaatttt |
109 |
Q |
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| T |
18730585 |
aagaatatggttaggttcttacgactcagccgtaaaggcggcgcgtgcattagaagcggctatgttttgcttacgtggcagtggtgctaagtttaattta |
18730486 |
T |
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| Q |
110 |
cctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaacccgaaaaga |
209 |
Q |
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| T |
18730485 |
cctaatgatcctccagaaattgcaggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaactcgaaaaga |
18730386 |
T |
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| Q |
210 |
cttcgtttgaaacaccgtcatcattggaggggacggcaacaacattgttgt |
260 |
Q |
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| T |
18730385 |
cttcgtttgaaacaccgtcatcatcggaggggacgacaacaacattgttgt |
18730335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 18735923 - 18735735
Alignment:
| Q |
11 |
agaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaattttc |
110 |
Q |
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| T |
18735923 |
agaatatggttaggttcctatgactccgacgtgaaggcggcacgtgcattcgacgcagctatgttttgcttacgtggcagtggtgctaagtttaattttc |
18735824 |
T |
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| Q |
111 |
ctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaa |
199 |
Q |
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| T |
18735823 |
ctaatgatcctccggagattgccggaggaaggtccatgacacattctgagattaagaccgcggcagcccgttttgccaattcgggtcaa |
18735735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 18743382 - 18743197
Alignment:
| Q |
11 |
agaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaattttc |
110 |
Q |
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| T |
18743382 |
agaatatggttaggttcttatgattctgccgagaaggcggcgcgtgctttcgacgcggcgatgttttgcttacgtggcagtggtgctaagtttaacttcc |
18743283 |
T |
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| Q |
111 |
ctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggt |
196 |
Q |
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| T |
18743282 |
ctaatgatccaccaaacattgctggaggaagaacaatgactccttctgagattcaagctgctgcagcccgttttgctaattcgggt |
18743197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 18735622 - 18735578
Alignment:
| Q |
216 |
ttgaaacaccgtcatcattggaggggacggcaacaacattgttgt |
260 |
Q |
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| T |
18735622 |
ttgaaacaccatctttattggaggggacgacaacaacattgttgt |
18735578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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