View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15647_low_12 (Length: 252)
Name: NF15647_low_12
Description: NF15647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15647_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 13398842 - 13398609
Alignment:
| Q |
20 |
aaaaaataaaacatggat-taataactttaaccactcattatttaatggacatggatatagatttgacagtacacatgcccgcggatagccgtatccgtt |
118 |
Q |
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| T |
13398842 |
aaaaaaaaaaacatggatataataactttaaccactcattatttattggacatggatatagatttgacagtacacatgcccgcggatagccgtatccgtt |
13398743 |
T |
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| Q |
119 |
aataaattagaaaaattatatatataagcttttaaaataactctagtttctaattaattaaattcac--atgtcatttttatacattttacacataaaga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
13398742 |
aataaattagaaaaattatatatataagcttttaaaataactctagtttctaattaattaaattcacatatgtcttttttatacattttacacat-aaga |
13398644 |
T |
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| Q |
217 |
tttgacttcttatactatttttgaagcttgaaata |
251 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
13398643 |
tttgacttcttatactatttttgaagcttgaaata |
13398609 |
T |
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