View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15647_low_15 (Length: 212)
Name: NF15647_low_15
Description: NF15647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15647_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 480378 - 480198
Alignment:
| Q |
18 |
ccaaaaccttaacgcatatatatgatatgtgttttgatattgaaataacatactatacctgcaaaatgagccaaattgaccaagcaacacagtttcctaa |
117 |
Q |
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| T |
480378 |
ccaaaaccttaacgcatatatatgatatgtgttttgatattgaaataacatactatacctgcaaaatgagccaaattgaccaagcaacacagtttcctaa |
480279 |
T |
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| Q |
118 |
aagacaaagacatccaagcaaccaattctcatcattactagagagtcttgccatgattgactttgaagttatgttctctgc |
198 |
Q |
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| T |
480278 |
aagacaaagacatccaagcaaccaattctcatcattactagagagtcttgccatgattgactttgaagttatgttctctgc |
480198 |
T |
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 474977 - 474898
Alignment:
| Q |
72 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatca |
151 |
Q |
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| T |
474977 |
atacctgcaaaatgagccaaagtgaccaggcaacactacttcccaaaagatacacacatccaagcaaccaactatcatca |
474898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 467943 - 467864
Alignment:
| Q |
72 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatca |
151 |
Q |
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| T |
467943 |
atacctgcaaaatgagaaaaattccccaagcaacagtgcatccgagaagagacagacatccaagcaaccaattctcatca |
467864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 27491400 - 27491479
Alignment:
| Q |
72 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatca |
151 |
Q |
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||||||||||||| ||||||| |||||| ||||||||| |||| |||||| | ||||||||||||||||||||||||| |
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| T |
27491400 |
atacctgcaaaataagccaaactgaccaggcaacacagcttccaaaaagaaccaaacatccaagcaaccaattctcatca |
27491479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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